UHGV-0179189 (vOTU-046677)

Viral Genome: UHGV-0179189

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0179189
vOTU ID	vOTU-046677
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_579954
Associated BioSample	SAMN09781726
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9833
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.27
Jumbo phage	No

Genome content
Genome length (bp)	43,466
GC content	57.78%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	68
CDS density	91%
Average CDS length (bps)	583.85
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0179189_3	phrog_13589	165.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0179189_3	742733.HMPREF9469_05009	204.0	0	N/A	N/A
PHROG	UHGV-0179189_4	phrog_31538	42.1	0.000000000019	N/A	unknown function
PHROG	UHGV-0179189_5	phrog_15594	59.7	4.9e-17	N/A	unknown function
eggNOG-mapper	UHGV-0179189_5	1118055.CAGU01000013_gene763	52.0	0.000000306	N/A	N/A
structural_annotation	UHGV-0179189_5	PF16640,TIGR04488	N/A	N/A	N/A	N/A
PHROG	UHGV-0179189_6	phrog_13892	43.4	0.0000000000034	minor tail protein	tail
eggNOG-mapper	UHGV-0179189_6	1127515.H9C0P1_9CAUD	64.7	0.0000000102	N/A	N/A
structural_annotation	UHGV-0179189_6	PF10651,NF033814	N/A	N/A	N/A	N/A
PHROG	UHGV-0179189_7	phrog_15239	87.4	7.4e-26	N/A	unknown function
eggNOG-mapper	UHGV-0179189_7	1449126.JQKL01000003_gene1694	51.2	0.00000256	N/A	N/A
PHROG	UHGV-0179189_8	phrog_1357	259.5	0	major head protein	head and packaging
UniRef90	UHGV-0179189_8	UniRef90_A0A8D9UH64	800.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0179189_8	1449126.JQKL01000003_gene1695	454.0	0	N/A	N/A
Pfam	UHGV-0179189_8	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0179189_8	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0179189_8	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0179189_9	phrog_13908	309.4	0	N/A	unknown function
UniRef90	UHGV-0179189_9	UniRef90_A0A844DRV7	119.0	9.87e-27	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0179189_9	1410650.JHWL01000003_gene2831	122.0	1.42e-29	N/A	N/A
UniRef90	UHGV-0179189_10	UniRef90_A0A8D9PDR6	190.0	0	YsxB-like protein	N/A
Pfam	UHGV-0179189_10	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
structural_annotation	UHGV-0179189_10	NF011128,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0179189_11	phrog_156	329.7	0	portal protein	head and packaging
UniRef90	UHGV-0179189_11	UniRef90_A0A8D9UH10	1242.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0179189_11	748224.HMPREF9436_01396	538.0	0	N/A	N/A
structural_annotation	UHGV-0179189_11	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-0179189_12	K06909	117.7	1.2e-34	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0179189_12	phrog_979	194.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0179189_12	UniRef90_A0A8D9PDR5	1016.0	0	Large subunit terminase	N/A
eggNOG-mapper	UHGV-0179189_12	657322.FPR_02290	616.0	0	Terminase-like family	N/A
Pfam	UHGV-0179189_12	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0179189_12	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0179189_12	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0179189_13	phrog_606	81.0	1.4e-23	terminase small subunit	head and packaging
UniRef90	UHGV-0179189_13	UniRef90_UPI00195648BB	186.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0179189_13	397290.C810_05185	144.0	4.21931e-42	DNA-packaging protein gp3	N/A
Pfam	UHGV-0179189_13	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0179189_13	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-0179189_14	K22299	47.4	0.00000000000047	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0179189_14	phrog_8	64.7	2e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0179189_14	UniRef90_A0A8D9PDC4	152.0	0	Repressor protein	N/A
eggNOG-mapper	UHGV-0179189_14	1226322.HMPREF1545_00039	79.0	1.69e-18	sequence-specific DNA binding	N/A
Pfam	UHGV-0179189_14	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0179189_14	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0179189_14	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0179189_15	PF06003,MF_01354,TIGR00739,COG5475	N/A	N/A	N/A	N/A
PHROG	UHGV-0179189_16	phrog_18716	179.4	0	N/A	unknown function
UniRef90	UHGV-0179189_16	UniRef90_R6RP50	185.0	0	N/A	N/A
eggNOG-mapper	UHGV-0179189_16	665959.HMPREF1013_00856	130.0	6.84e-38	N/A	N/A
Pfam	UHGV-0179189_16	PF18909	N/A	N/A	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
structural_annotation	UHGV-0179189_16	PF18909	N/A	N/A	N/A	N/A
UniRef90	UHGV-0179189_18	UniRef90_A0A8D9PDK2	201.0	0	Zinc-ribbon containing domain	N/A
UniRef90	UHGV-0179189_23	UniRef90_A0A8D9PDK1	120.0	1.62e-33	Anti-repressor	N/A
KOfam	UHGV-0179189_25	K00558	149.5	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0179189_25	phrog_116	184.9	0	DNA methyltransferase	other
UniRef90	UHGV-0179189_25	UniRef90_D4JYK0	382.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0179189_25	718252.FP2_16350	382.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0179189_25	oMTase_00004	192.2	0	orphan methyltransferase	RM
Pfam	UHGV-0179189_25	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0179189_25	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0179189_25	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-0179189_28	phrog_190	113.3	1.9e-33	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0179189_28	UniRef90_A0A8D9PDD6	271.0	0	Endonuclease	N/A
eggNOG-mapper	UHGV-0179189_28	1226322.HMPREF1545_00295	119.0	2.42e-32	N/A	N/A
Pfam	UHGV-0179189_28	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0179189_28	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-0179189_30	phrog_15768	104.9	7.3e-33	N/A	unknown function
UniRef90	UHGV-0179189_30	UniRef90_A0A8D9PDU3	318.0	0	N/A	N/A
eggNOG-mapper	UHGV-0179189_30	203119.Cthe_2466	84.7	1.41e-16	N/A	N/A
Pfam	UHGV-0179189_30	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0179189_30	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0179189_32	K03111	148.9	5.04467e-44	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0179189_32	phrog_44	143.8	1.00053e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0179189_32	UniRef90_R6GTK3	200.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0179189_32	693746.OBV_19910	195.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0179189_32	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0179189_32	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0179189_32	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0179189_32	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0179189_32	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0179189_33	phrog_7566	98.3	4.4e-29	N/A	unknown function
UniRef90	UHGV-0179189_33	UniRef90_A0A8D9UHC0	145.0	1.30321e-43	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-0179189_33	693746.OBV_24070	115.0	3.12e-32	N/A	N/A
PHROG	UHGV-0179189_35	phrog_72	58.8	4.4e-17	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0179189_35	UniRef90_A0A8D9PDS2	338.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-0179189_35	445972.ANACOL_01825	133.0	5.02e-37	N/A	N/A
structural_annotation	UHGV-0179189_35	PF05772	N/A	N/A	N/A	N/A
UniRef90	UHGV-0179189_36	UniRef90_B0PAM4	155.0	9.80909e-45	YqaJ domain-containing protein	N/A
structural_annotation	UHGV-0179189_36	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
UniRef90	UHGV-0179189_37	UniRef90_A0A845QLQ8	187.0	0	N/A	N/A
eggNOG-mapper	UHGV-0179189_37	33035.JPJF01000135_gene5082	113.0	2.24e-28	N/A	N/A
Pfam	UHGV-0179189_37	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0179189_37	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
UniRef90	UHGV-0179189_39	UniRef90_A0A8D9UH91	310.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0179189_39	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
structural_annotation	UHGV-0179189_39	PF01381,PF21715,NF041951,TIGR04176,COG1476,COG1654	N/A	N/A	N/A	N/A
PHROG	UHGV-0179189_41	phrog_22529	50.0	0.000000000000035	N/A	unknown function
UniRef90	UHGV-0179189_41	UniRef90_A0A8D9UHA1	298.0	0	3D containing protein	N/A
eggNOG-mapper	UHGV-0179189_41	742733.HMPREF9469_00853	63.2	0.00000000039	3D domain	N/A
Pfam	UHGV-0179189_41	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-0179189_41	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-0179189_41	COG3584	N/A	N/A	N/A	N/A
UniRef90	UHGV-0179189_43	UniRef90_A0A8D9PDM8	134.0	6.54e-40	Pyocin activator protein	N/A
UniRef90	UHGV-0179189_44	UniRef90_A0A8D9PDN2	128.0	1.28e-37	DNA-binding protein	N/A
structural_annotation	UHGV-0179189_44	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0179189_45	phrog_8	46.2	0.0000000000011	transcriptional regulator	transcription regulation
UniRef90	UHGV-0179189_45	UniRef90_A0A8D9UHB1	203.0	0	Repressor protein CI	N/A
eggNOG-mapper	UHGV-0179189_45	1297617.JPJD01000059_gene2644	55.1	0.0000000564	addiction module antidote protein HigA	N/A
Pfam	UHGV-0179189_45	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0179189_45	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-0179189_45	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0179189_46	UniRef90_A0A8D9PDV1	171.0	0	Glycophorin A	N/A
UniRef90	UHGV-0179189_47	UniRef90_A0A8D9PDV2	152.0	0	DNA methyl phosphotriester repair domain protein	N/A
eggNOG-mapper	UHGV-0179189_47	1226325.HMPREF1548_05412	66.2	0.00000000000438	Peptidoglycan-binding domain 1 protein	N/A
COG	UHGV-0179189_47	COG2333	N/A	N/A	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	N/A
UniRef90	UHGV-0179189_48	UniRef90_A0A8D9UHA6	387.0	0	Helix-turn-helix XRE-family like protein	N/A
Pfam	UHGV-0179189_48	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0179189_48	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0179189_48	PF12844,MF_00535,TIGR03070,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0179189_49	K14059	145.8	5.10073e-43	int; integrase	N/A
PHROG	UHGV-0179189_49	phrog_1	162.7	0	integrase	integration and excision
UniRef90	UHGV-0179189_49	UniRef90_A0A8D9UGU2	737.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0179189_49	693746.OBV_41260	280.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0179189_49	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0179189_49	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0179189_49	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0179189_50	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0179189_51	phrog_20016	185.4	0	N/A	unknown function
UniRef90	UHGV-0179189_51	UniRef90_A0A285PT46	188.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0179189_51	1226322.HMPREF1545_00077	168.0	0	N/A	N/A
structural_annotation	UHGV-0179189_51	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0179189_52	phrog_16490	121.1	1.3e-35	N/A	unknown function
eggNOG-mapper	UHGV-0179189_52	1408437.JNJN01000043_gene803	156.0	1.26117e-44	N/A	N/A
PHROG	UHGV-0179189_53	phrog_22984	77.0	2.2e-22	N/A	unknown function
PHROG	UHGV-0179189_54	phrog_21718	102.5	4.1e-30	N/A	unknown function
eggNOG-mapper	UHGV-0179189_54	397290.C810_05210	69.7	0.000000000000643	N/A	N/A
PHROG	UHGV-0179189_55	phrog_3754	94.2	1.4e-27	N/A	unknown function
eggNOG-mapper	UHGV-0179189_55	476272.RUMHYD_01764	162.0	0	N/A	N/A
PHROG	UHGV-0179189_56	phrog_22978	834.4	0	N/A	unknown function
UniRef90	UHGV-0179189_56	UniRef90_UPI001C019A6F	444.0	0	OmpH family outer membrane protein	N/A
eggNOG-mapper	UHGV-0179189_56	1410650.JHWL01000003_gene2814	284.0	0	N/A	N/A
eggNOG-mapper	UHGV-0179189_57	1410650.JHWL01000003_gene2815	65.5	0.00000000457	N/A	N/A
UniRef90	UHGV-0179189_58	UniRef90_A0A8D9UGT1	131.0	1.79e-37	Sigma C capsid protein	N/A
PHROG	UHGV-0179189_59	phrog_511	221.4	0	internal virion protein	head and packaging
UniRef90	UHGV-0179189_59	UniRef90_A0A8D9UH72	918.0	0	Stabilization protein (Fragment)	N/A
eggNOG-mapper	UHGV-0179189_59	1226322.HMPREF1545_00785	311.0	0	N/A	N/A
structural_annotation	UHGV-0179189_59	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0179189_60	phrog_12105	88.7	1.2e-26	N/A	unknown function
eggNOG-mapper	UHGV-0179189_60	1519439.JPJG01000060_gene1891	62.0	0.000000000102	N/A	N/A
PHROG	UHGV-0179189_61	phrog_435	58.2	1.9e-16	endolysin	lysis
UniRef90	UHGV-0179189_61	UniRef90_A0A8D9PDX2	354.0	0	MurNAc-LAA protein	N/A
eggNOG-mapper	UHGV-0179189_61	1226322.HMPREF1545_01953	82.0	8.64e-16	N-acetylmuramoyl-L-alanine amidase	N/A
COG	UHGV-0179189_61	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0179189_61	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
PHROG	UHGV-0179189_62	phrog_1129	75.3	5.5e-22	holin	lysis
UniRef90	UHGV-0179189_62	UniRef90_A0A8D9PDD4	182.0	0	Holin	N/A
eggNOG-mapper	UHGV-0179189_62	1226322.HMPREF1545_00069	111.0	8.74e-31	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0179189_62	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0179189_62	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0179189_63	phrog_4105	103.7	1.1e-30	N/A	unknown function
UniRef90	UHGV-0179189_63	UniRef90_A0A8D9UHA9	206.0	0	Holin protein	N/A
eggNOG-mapper	UHGV-0179189_63	411460.RUMTOR_01326	140.0	3.32949e-42	N/A	N/A
PHROG	UHGV-0179189_65	phrog_2310	55.4	6.5e-16	N/A	unknown function
eggNOG-mapper	UHGV-0179189_65	1151292.QEW_0364	53.1	0.00000000584	N/A	N/A
Pfam	UHGV-0179189_68	PF21722	N/A	N/A	Glycine-rich domain	Gly_rich_2
structural_annotation	UHGV-0179189_68	PF21722	N/A	N/A	N/A	N/A