UHGV-0179268 (vOTU-134647)

Viral Genome: UHGV-0179268

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0179268
vOTU ID	vOTU-134647
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_583482
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.06 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.976
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.08
Jumbo phage	No

Genome content
Genome length (bp)	46,771
GC content	46.26%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	58
CDS density	95%
Average CDS length (bps)	766.40
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 80.06)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0179268_1	phrog_606	51.5	0.000000000000017	terminase small subunit	head and packaging
Pfam	UHGV-0179268_1	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0179268_1	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-0179268_2	K06909	296.3	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0179268_2	phrog_3717	196.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0179268_2	UniRef90_A0A3S1ABC6	478.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0179268_2	696281.Desru_1088	441.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0179268_2	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-0179268_2	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0179268_2	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0179268_2	PF04466,PF20454,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0179268_5	phrog_156	91.0	2.2e-28	portal protein	head and packaging
eggNOG-mapper	UHGV-0179268_5	588581.Cpap_1526	234.0	0	N/A	N/A
structural_annotation	UHGV-0179268_5	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
PHROG	UHGV-0179268_7	phrog_14242	114.5	7.5e-34	major head protein	head and packaging
UniRef90	UHGV-0179268_7	UniRef90_A0A355JD53	273.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0179268_7	588581.Cpap_1528	138.0	4.31e-34	N/A	N/A
NCBIFam	UHGV-0179268_7	NF033394.1	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0179268_7	PF17236,MF_04133,NF033394,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0179268_9	PF20387	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0179268_10	1449126.JQKL01000002_gene1688	80.5	0.000000000000233	N/A	N/A
structural_annotation	UHGV-0179268_10	PF11134,MF_00923,NF010237,NF038128,COG5276	N/A	N/A	N/A	N/A
COG	UHGV-0179268_13	COG4886	N/A	N/A	Leucine-rich repeat (LRR) protein	N/A
PHROG	UHGV-0179268_14	phrog_19111	84.0	1.2e-24	N/A	unknown function
COG	UHGV-0179268_14	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
PHROG	UHGV-0179268_18	phrog_4105	96.6	1.8e-28	N/A	unknown function
eggNOG-mapper	UHGV-0179268_18	397288.C806_00056	98.2	3.69e-25	N/A	N/A
KOfam	UHGV-0179268_19	K19304	100.1	3e-29	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-0179268_19	phrog_7767	94.2	1e-27	metallo-endopeptidase	other
UniRef90	UHGV-0179268_19	UniRef90_A0A373Q9Y2	127.0	7.98e-30	NAGPA domain-containing protein	N/A
eggNOG-mapper	UHGV-0179268_19	1158601.I585_02846	94.0	7.48e-18	Peptidase family M23	N/A
Pfam	UHGV-0179268_19	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
Pfam	UHGV-0179268_19	PF09992	N/A	N/A	Phosphodiester glycosidase	NAGPA
COG	UHGV-0179268_19	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-0179268_19	PF01551,PF09992,NF040883,COG0739,COG3698	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0179268_21	1121334.KB911071_gene1966	55.5	0.00000000428	N/A	N/A
structural_annotation	UHGV-0179268_24	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0179268_26	1408437.JNJN01000043_gene801	91.7	7.52e-21	N/A	N/A
KOfam	UHGV-0179268_27	K14059	169.3	0	int; integrase	N/A
PHROG	UHGV-0179268_27	phrog_1	152.5	4.2039e-45	integrase	integration and excision
UniRef90	UHGV-0179268_27	UniRef90_A0A353J242	192.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0179268_27	887325.HMPREF0381_0346	169.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0179268_27	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0179268_27	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0179268_27	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0179268_28	phrog_22978	385.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0179268_28	1321782.HMPREF1986_00356	243.0	0	N/A	N/A
Pfam	UHGV-0179268_28	PF18814	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
Pfam	UHGV-0179268_28	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C
Pfam	UHGV-0179268_28	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
KOfam	UHGV-0179268_31	K03111	128.1	1.2e-37	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0179268_31	phrog_44	125.6	4.6e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0179268_31	UniRef90_A0A7C6GL00	154.0	1.4013e-45	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0179268_31	1232443.BAIA02000073_gene513	120.0	3.55e-33	Single-strand binding protein family	N/A
Pfam	UHGV-0179268_31	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0179268_31	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0179268_31	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0179268_31	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0179268_31	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0179268_32	phrog_200	70.2	2.4e-22	lipoprotein	other
Pfam	UHGV-0179268_32	PF01145	N/A	N/A	SPFH domain / Band 7 family	Band_7
PHROG	UHGV-0179268_35	phrog_474	85.4	1.3e-24	phosphofructokinase	other
UniRef90	UHGV-0179268_35	UniRef90_UPI00195F5FF7	95.5	1.79e-23	N/A	N/A
eggNOG-mapper	UHGV-0179268_35	1095750.HMPREF9970_1026	80.5	2.28e-18	N/A	N/A
Pfam	UHGV-0179268_35	PF19905	N/A	N/A	N/A	DUF6378
structural_annotation	UHGV-0179268_35	PF19905	N/A	N/A	N/A	N/A
PHROG	UHGV-0179268_36	phrog_4632	54.3	6.4e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0179268_36	UniRef90_A0A1V5ZUM0	101.0	8.29e-25	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-0179268_36	469604.HMPREF0946_00819	70.9	0.0000000000000541	N/A	N/A
structural_annotation	UHGV-0179268_36	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0179268_45	K07451	60.7	2.8e-17	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0179268_45	phrog_1271	67.3	3.7e-19	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0179268_45	UniRef90_UPI001A90E773	113.0	6.46e-28	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0179268_45	1158609.I586_02595	112.0	2.29e-28	HNH nucleases	N/A
Pfam	UHGV-0179268_45	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0179268_45	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0179268_45	PF01844,NF008448,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0179268_46	phrog_7314	46.8	0.00000000000056	N/A	unknown function
PHROG	UHGV-0179268_49	phrog_9300	42.6	0.0000000000064	N/A	unknown function
structural_annotation	UHGV-0179268_50	PF04319,PF08962	N/A	N/A	N/A	N/A
KOfam	UHGV-0179268_52	K01520	131.0	1.1e-38	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0179268_52	phrog_135	113.7	1.5e-33	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0179268_52	UniRef90_R6ILQ3	145.0	2.71992e-42	Deoxyuridine 5'-triphosphate nucleotidohydrolase	N/A
eggNOG-mapper	UHGV-0179268_52	1282887.AUJG01000016_gene1113	138.0	4.76e-39	N/A	N/A
Pfam	UHGV-0179268_52	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-0179268_52	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-0179268_52	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0179268_52	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
PHROG	UHGV-0179268_57	phrog_9804	104.8	8.9e-31	N/A	unknown function
UniRef90	UHGV-0179268_57	UniRef90_R6LQQ5	114.0	1.33e-28	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-0179268_57	1499683.CCFF01000013_gene503	83.2	3.26e-17	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-0179268_57	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0179268_57	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0179268_58	phrog_270	86.3	6.2e-25	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0179268_58	1423724.BAMM01000020_gene1808	75.9	0.0000000000000538	N/A	N/A
COG	UHGV-0179268_58	COG3756	N/A	N/A	N/A	N/A