UHGV-0179305 (vOTU-065466)

Viral Genome: UHGV-0179305

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0179305
vOTU ID	vOTU-065466
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_591885
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.77 (High-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9757
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.25
Jumbo phage	No

Genome content
Genome length (bp)	35,789
GC content	59.72%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	56
CDS density	93%
Average CDS length (bps)	596.63
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 98.77)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0179305_1	phrog_144	64.6	2.1e-18	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0179305_1	UniRef90_A0A1M5WHB2	144.0	1.43997e-41	5-methylcytosine-specific restriction enzyme A	N/A
eggNOG-mapper	UHGV-0179305_1	696748.ASU2_03205	85.9	9.13e-20	HNH endonuclease	N/A
COG	UHGV-0179305_1	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0179305_2	phrog_36	83.0	4.3e-24	transcriptional regulator	transcription regulation
UniRef90	UHGV-0179305_2	UniRef90_A0A7C6WSC4	59.7	0.0000000168	N/A	N/A
eggNOG-mapper	UHGV-0179305_2	1127695.HMPREF9163_00372	63.2	0.000000000109	sigma factor activity	N/A
Pfam	UHGV-0179305_2	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-0179305_2	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0179305_2	PF07374,MF_00674,NF008895,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-0179305_3	phrog_3584	184.0	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0179305_3	1415775.U729_1544	148.0	6.39001e-40	N/A	N/A
structural_annotation	UHGV-0179305_3	PF21578,NF033538	N/A	N/A	N/A	N/A
PHROG	UHGV-0179305_4	phrog_111	143.3	1.3004e-42	DNA methyltransferase	other
UniRef90	UHGV-0179305_4	UniRef90_A0A6N7IQE5	164.0	0	Adenine methyltransferase	N/A
eggNOG-mapper	UHGV-0179305_4	760568.Desku_0784	184.0	0	DNA N-6-adenine-methyltransferase	N/A
PADLOC	UHGV-0179305_4	oMTase_00015	155.3	0	orphan methyltransferase	RM
Pfam	UHGV-0179305_4	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-0179305_5	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-0179305_6	phrog_1384	110.1	2e-32	Mom-like DNA modification protein	other
eggNOG-mapper	UHGV-0179305_6	428125.CLOLEP_01816	179.0	0	COG NOG12663 non supervised orthologous group	N/A
structural_annotation	UHGV-0179305_6	PF11124,MF_02210,NF040502,COG3818	N/A	N/A	N/A	N/A
Pfam	UHGV-0179305_8	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
PHROG	UHGV-0179305_12	phrog_190	84.0	1.9e-24	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0179305_12	UniRef90_A0A7V6W6S0	91.3	2.35e-21	N/A	N/A
eggNOG-mapper	UHGV-0179305_12	1029823.AFIE01000007_gene1906	70.1	0.000000000000131	N/A	N/A
Pfam	UHGV-0179305_12	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0179305_12	PF06356,MF_04160,NF033179	N/A	N/A	N/A	N/A
KOfam	UHGV-0179305_22	K02342	174.4	0	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-0179305_22	phrog_14632	135.4	3.20001e-40	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0179305_22	UniRef90_A0A6C2UMT5	137.0	5.37e-36	DNA polymerase III PolC-type	N/A
eggNOG-mapper	UHGV-0179305_22	373903.Hore_07800	125.0	2.29e-29	Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity	N/A
PADLOC	UHGV-0179305_22	cd06127	123.3	2.2e-36	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-0179305_22	PF00929	N/A	N/A	Exonuclease	RNase_T
NCBIFam	UHGV-0179305_22	TIGR00573.1	N/A	N/A	exonuclease, DNA polymerase III, epsilon subunit family	N/A
COG	UHGV-0179305_22	COG2176	N/A	N/A	DNA polymerase III, alpha subunit (gram-positive type)	N/A
KOfam	UHGV-0179305_23	K22300	62.6	8.8e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0179305_23	phrog_4	50.6	0.00000000000005	transcriptional repressor	transcription regulation
UniRef90	UHGV-0179305_23	UniRef90_A0A3A8UP81	107.0	2.79e-26	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0179305_23	1235802.C823_01933	97.1	8.63e-24	Helix-turn-helix domain	N/A
Pfam	UHGV-0179305_23	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0179305_23	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0179305_23	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
Pfam	UHGV-0179305_25	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
KOfam	UHGV-0179305_26	K06400	299.0	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0179305_26	phrog_95	321.3	0	integrase	integration and excision
UniRef90	UHGV-0179305_26	UniRef90_A0A352UMB6	382.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0179305_26	1408437.JNJN01000002_gene1420	349.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0179305_26	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0179305_26	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0179305_26	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0179305_26	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0179305_26	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0179305_28	K07729	55.6	0.0000000000000013	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0179305_28	phrog_3	44.3	0.0000000000076	transcriptional repressor	transcription regulation
UniRef90	UHGV-0179305_28	UniRef90_A0A2V2FT63	94.0	1.48e-23	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0179305_28	596330.HMPREF0628_1294	57.8	0.000000000312	sequence-specific DNA binding	N/A
Pfam	UHGV-0179305_28	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0179305_28	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0179305_28	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0179305_36	phrog_199	83.6	2.2e-24	holin	lysis
UniRef90	UHGV-0179305_36	UniRef90_A0A7X7I5M6	175.0	0	Phage holin family protein	N/A
eggNOG-mapper	UHGV-0179305_36	986075.CathTA2_0712	105.0	3.31e-27	Phage-related holin (Lysis protein)	N/A
Pfam	UHGV-0179305_36	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0179305_36	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0179305_36	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0179305_36	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0179305_37	phrog_1493	74.3	1.8e-21	endolysin	lysis
UniRef90	UHGV-0179305_37	UniRef90_A0A1V5Q5W6	341.0	0	Putative peptidoglycan binding domain protein	N/A
eggNOG-mapper	UHGV-0179305_37	294382.Q5YA51_9CAUD	70.9	0.000000000075	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0179305_37	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
Pfam	UHGV-0179305_37	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
structural_annotation	UHGV-0179305_37	PF18342,PF01471,PF00877,NF038080,COG4991,COG3409,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0179305_39	phrog_35892	67.4	8.4e-20	N/A	unknown function
Pfam	UHGV-0179305_39	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
structural_annotation	UHGV-0179305_40	PF16640	N/A	N/A	N/A	N/A
PHROG	UHGV-0179305_41	phrog_1067	151.8	0	minor head protein	head and packaging
eggNOG-mapper	UHGV-0179305_41	272562.CA_C0063	86.7	0.0000000000000511	Prophage endopeptidase tail	N/A
Pfam	UHGV-0179305_41	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
Pfam	UHGV-0179305_41	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0179305_41	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0179305_41	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0179305_42	phrog_33	65.4	1.6e-18	distal tail protein Dit	tail
UniRef90	UHGV-0179305_42	UniRef90_A0A350TW29	122.0	1.55e-30	Phage tail protein	N/A
eggNOG-mapper	UHGV-0179305_42	1262449.CP6013_2095	99.4	1.39e-22	tail component	N/A
COG	UHGV-0179305_42	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0179305_42	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0179305_43	phrog_13339	329.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0179305_43	UniRef90_UPI00189C4E6E	265.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0179305_43	1117379.BABA_17397	246.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0179305_43	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0179305_43	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0179305_43	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0179305_44	PF11836,TIGR01674	N/A	N/A	N/A	N/A
PHROG	UHGV-0179305_45	phrog_21498	290.2	0	N/A	unknown function
UniRef90	UHGV-0179305_45	UniRef90_C7MM70	224.0	0	ParB-like nuclease	N/A
eggNOG-mapper	UHGV-0179305_45	469378.Ccur_02830	224.0	0	DNA binding	N/A
COG	UHGV-0179305_45	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0179305_45	PF05869,TIGR01712	N/A	N/A	N/A	N/A
PHROG	UHGV-0179305_46	phrog_88	88.6	7.8e-26	major tail protein	tail
UniRef90	UHGV-0179305_46	UniRef90_R5IDR6	126.0	2.13e-33	Phage major tail protein phi13 family	N/A
eggNOG-mapper	UHGV-0179305_46	1121929.KB898698_gene228	58.9	0.000000031	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0179305_46	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0179305_46	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0179305_47	1203606.HMPREF1526_00974	53.9	0.000000372	N/A	N/A
eggNOG-mapper	UHGV-0179305_48	1203606.HMPREF1526_00975	56.6	0.0000000101	N/A	N/A
structural_annotation	UHGV-0179305_48	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0179305_49	phrog_25	42.2	0.000000000014	head closure Hc1	connector
Pfam	UHGV-0179305_49	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
COG	UHGV-0179305_49	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0179305_49	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0179305_50	phrog_442	97.4	1.6e-28	head-tail adaptor	connector
UniRef90	UHGV-0179305_50	UniRef90_A0A0U5C947	77.0	0.0000000000000335	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0179305_50	521674.Plim_4255	83.2	2.46e-17	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-0179305_50	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-0179305_50	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0179305_50	PF05135,TIGR02215	N/A	N/A	N/A	N/A
PHROG	UHGV-0179305_52	phrog_10	214.9	0	major head protein	head and packaging
UniRef90	UHGV-0179305_52	UniRef90_A0A1V5WB68	423.0	0	Phage capsid family protein	N/A
eggNOG-mapper	UHGV-0179305_52	1121324.CLIT_8c00760	255.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0179305_52	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0179305_52	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0179305_52	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0179305_52	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0179305_53	K01358	166.8	0	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0179305_53	phrog_94	241.0	0	head maturation protease	head and packaging
UniRef90	UHGV-0179305_53	UniRef90_A0A1V5WAY6	218.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0179305_53	748727.CLJU_c03550	192.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0179305_53	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0179305_53	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0179305_53	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0179305_54	phrog_12	295.8	0	portal protein	head and packaging
UniRef90	UHGV-0179305_54	UniRef90_A0A1V5WBB3	437.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0179305_54	1121334.KB911073_gene1858	256.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0179305_54	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0179305_54	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0179305_54	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0179305_54	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0179305_55	phrog_9	431.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0179305_55	UniRef90_UPI00164ABF0B	691.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0179305_55	1122919.KB905559_gene1359	584.0	0	Terminase	N/A
Pfam	UHGV-0179305_55	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0179305_55	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0179305_55	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0179305_55	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0179305_56	1449126.JQKL01000051_gene3175	104.0	2.38e-25	N/A	N/A