UHGV-0179447 (vOTU-089514)

Viral Genome: UHGV-0179447

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0179447
vOTU ID	vOTU-089514
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_585552
Associated BioSample	SAMN09781789
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.16 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	3
Recoded stop codon	No

Viral Content
geNomad score	0.9712
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.56
Jumbo phage	No

Genome content
Genome length (bp)	27,951
GC content	56.12%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	50
CDS density	89%
Average CDS length (bps)	499.74
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 72.16)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0179447_2	UniRef90_A0A6P1MDZ1	222.0	0	Peptidase_C39_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0179447_2	397291.C804_01109	204.0	0	Phage lysozyme	N/A
Pfam	UHGV-0179447_2	PF13529	N/A	N/A	Peptidase_C39 like family	Peptidase_C39_2
COG	UHGV-0179447_2	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-0179447_2	PF03412,COG4990	N/A	N/A	N/A	N/A
UniRef90	UHGV-0179447_3	UniRef90_UPI001C037734	90.5	1.16e-22	LuxR C-terminal-related transcriptional regulator	N/A
Pfam	UHGV-0179447_3	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
COG	UHGV-0179447_3	COG2197	N/A	N/A	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	N/A
structural_annotation	UHGV-0179447_3	PF04545,MF_00245,NF001067,COG2771	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0179447_5	1408312.JNJS01000001_gene1338	57.8	0.00000000896	sequence-specific DNA binding	N/A
COG	UHGV-0179447_5	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0179447_5	PF08965,NF040522	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0179447_9	PF10723	N/A	N/A	N/A	N/A
PHROG	UHGV-0179447_12	phrog_16490	62.2	3.6e-18	N/A	unknown function
eggNOG-mapper	UHGV-0179447_12	476272.RUMHYD_01770	81.6	2.07e-16	N/A	N/A
structural_annotation	UHGV-0179447_13	PF18573,NF033147	N/A	N/A	N/A	N/A
Pfam	UHGV-0179447_14	PF02915	N/A	N/A	Rubrerythrin	Rubrerythrin
KOfam	UHGV-0179447_15	K14059	201.4	0	int; integrase	N/A
PHROG	UHGV-0179447_15	phrog_1	197.8	0	integrase	integration and excision
UniRef90	UHGV-0179447_15	UniRef90_R5HDB9	406.0	0	Integrase family protein	N/A
eggNOG-mapper	UHGV-0179447_15	1408437.JNJN01000039_gene380	196.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0179447_15	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0179447_15	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0179447_15	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0179447_18	UniRef90_UPI001C3B7CCF	137.0	2.54e-36	Copper amine oxidase N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0179447_18	1297617.JPJD01000001_gene2682	102.0	2.5e-23	Peptidase propeptide and YPEB domain protein	N/A
Pfam	UHGV-0179447_18	PF07833	N/A	N/A	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
COG	UHGV-0179447_18	COG3212	N/A	N/A	PepSY domain containing protein, regulator of zincin peptidase activity	N/A
structural_annotation	UHGV-0179447_19	NF038294	N/A	N/A	N/A	N/A
KOfam	UHGV-0179447_20	K18830	54.5	0.0000000000000032	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0179447_20	phrog_2967	57.5	2.6e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0179447_20	UniRef90_UPI0013DE7A28	87.0	1.88e-19	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0179447_20	641107.CDLVIII_1309	68.9	0.000000000000268	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0179447_20	retron_type_VI_hth_cluster2_1	43.6	0.0000000000073	N/A	Retron
Pfam	UHGV-0179447_20	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0179447_20	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0179447_20	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0179447_24	PF19157	N/A	N/A	N/A	N/A
PHROG	UHGV-0179447_27	phrog_270	109.0	5.6e-32	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0179447_27	UniRef90_UPI001F33ADD3	199.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0179447_27	411467.BACCAP_01805	131.0	1.45e-33	COG NOG34358 non supervised orthologous group	N/A
Pfam	UHGV-0179447_27	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0179447_27	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0179447_27	PF02295,MF_01819,TIGR04176,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-0179447_28	K02314	276.4	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0179447_28	phrog_19	250.7	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0179447_28	UniRef90_A0A2N2CMR0	280.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0179447_28	693746.OBV_27440	250.0	0	DnaB-like helicase N terminal domain	N/A
Pfam	UHGV-0179447_28	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0179447_28	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0179447_28	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0179447_28	PF03796,PF00772,MF_04155,NF005240,COG0305	N/A	N/A	N/A	N/A
KOfam	UHGV-0179447_29	K01494	175.9	0	dcd; dCTP deaminase [EC:3.5.4.13]	N/A
PHROG	UHGV-0179447_29	phrog_1663	93.8	1.8e-27	dCTP deaminase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0179447_29	UniRef90_A0A352KV84	209.0	0	dCTP deaminase, dUMP-forming	N/A
eggNOG-mapper	UHGV-0179447_29	1121335.Clst_0069	204.0	0	TIGRFAM deoxycytidine triphosphate deaminase	N/A
Pfam	UHGV-0179447_29	PF06559	N/A	N/A	2'-deoxycytidine 5'-triphosphate deaminase (DCD)	DCD
NCBIFam	UHGV-0179447_29	TIGR02274.1	N/A	N/A	dCTP deaminase	N/A
COG	UHGV-0179447_29	COG0717	N/A	N/A	dCTP deaminase	N/A
HAMAP	UHGV-0179447_29	MF_00146	N/A	N/A	dCTP deaminase, dUMP-forming [dcd]	N/A
PHROG	UHGV-0179447_33	phrog_1384	128.7	4e-38	Mom-like DNA modification protein	other
eggNOG-mapper	UHGV-0179447_33	665956.HMPREF1032_03086	254.0	0	COG NOG12663 non supervised orthologous group	N/A
structural_annotation	UHGV-0179447_33	PF11124,MF_02210,NF040502,COG3818	N/A	N/A	N/A	N/A
PHROG	UHGV-0179447_34	phrog_111	152.1	2.8026e-45	DNA methyltransferase	other
UniRef90	UHGV-0179447_34	UniRef90_UPI001F36E3B3	235.0	0	phage N-6-adenine-methyltransferase	N/A
eggNOG-mapper	UHGV-0179447_34	445972.ANACOL_03344	201.0	0	DNA N-6-adenine-methyltransferase (Dam)	N/A
PADLOC	UHGV-0179447_34	oMTase_00015	166.9	0	orphan methyltransferase	RM
Pfam	UHGV-0179447_34	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-0179447_34	PF05869,TIGR01712,COG0338	N/A	N/A	N/A	N/A
PHROG	UHGV-0179447_35	phrog_474	130.7	1.3e-38	phosphofructokinase	other
UniRef90	UHGV-0179447_35	UniRef90_A0A7X6GRJ7	102.0	2.66e-25	N/A	N/A
eggNOG-mapper	UHGV-0179447_35	1123247.AUIJ01000002_gene2234	99.0	9.03e-25	N/A	N/A
Pfam	UHGV-0179447_35	PF19905	N/A	N/A	N/A	DUF6378
structural_annotation	UHGV-0179447_35	PF19905	N/A	N/A	N/A	N/A
PHROG	UHGV-0179447_36	phrog_3584	78.6	5.2e-23	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0179447_36	1007096.BAGW01000012_gene2371	107.0	1.1e-25	N/A	N/A
structural_annotation	UHGV-0179447_36	PF21578,NF041486	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0179447_37	742738.HMPREF9460_00868	65.9	0.000000000000134	Cysteine-rich KTR	N/A
Pfam	UHGV-0179447_37	PF14205	N/A	N/A	Cysteine-rich KTR	Cys_rich_KTR
structural_annotation	UHGV-0179447_37	PF14205	N/A	N/A	N/A	N/A
PHROG	UHGV-0179447_39	phrog_20533	48.2	0.00000000000014	N/A	unknown function
UniRef90	UHGV-0179447_39	UniRef90_A0A413FXL7	200.0	0	PLD phosphodiesterase domain-containing protein	N/A
eggNOG-mapper	UHGV-0179447_39	1123058.KB894251_gene2369	85.1	1.48e-17	N/A	N/A
PHROG	UHGV-0179447_40	phrog_83	49.1	0.000000000000044	terminase small subunit	head and packaging
UniRef90	UHGV-0179447_40	UniRef90_UPI0013EF20CD	112.0	6.25e-29	P27 family phage terminase small subunit	N/A
Pfam	UHGV-0179447_40	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0179447_40	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
PHROG	UHGV-0179447_41	phrog_9	314.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0179447_41	UniRef90_A0A6N3FX18	957.0	0	Phage Terminase	N/A
eggNOG-mapper	UHGV-0179447_41	693746.OBV_20000	937.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0179447_41	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0179447_41	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0179447_41	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0179447_41	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0179447_43	phrog_12	271.8	0	portal protein	head and packaging
UniRef90	UHGV-0179447_43	UniRef90_UPI001AE072D2	473.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0179447_43	693746.OBV_20020	194.0	0	Phage portal protein	N/A
Pfam	UHGV-0179447_43	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0179447_43	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0179447_43	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0179447_43	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0179447_44	K01358	98.9	7.4e-29	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0179447_44	phrog_94	172.3	0	head maturation protease	head and packaging
UniRef90	UHGV-0179447_44	UniRef90_A0A644ZMQ3	239.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0179447_44	1121864.OMO_01325	123.0	2.13e-31	Clp protease	N/A
Pfam	UHGV-0179447_44	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0179447_44	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0179447_44	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0179447_45	phrog_10	95.8	5.4e-28	major head protein	head and packaging
UniRef90	UHGV-0179447_45	UniRef90_UPI001BB4749F	354.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0179447_45	742740.HMPREF9474_04304	171.0	0	Phage capsid family	N/A
Pfam	UHGV-0179447_45	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0179447_45	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0179447_45	PF05065,PF14182,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0179447_46	phrog_40	48.7	0.0000000000001	head-tail adaptor Ad1	connector
UniRef90	UHGV-0179447_46	UniRef90_A0A8F9U0R6	73.6	0.00000000000000621	Head-tail connector protein	N/A
eggNOG-mapper	UHGV-0179447_46	1329516.JPST01000016_gene398	61.2	0.0000000000901	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-0179447_46	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-0179447_46	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
PHROG	UHGV-0179447_47	phrog_25	61.6	1.3e-17	head closure Hc1	connector
UniRef90	UHGV-0179447_47	UniRef90_UPI0018E290DF	133.0	5.39e-38	phage head closure protein	N/A
eggNOG-mapper	UHGV-0179447_47	1285586.H131_21292	60.5	0.000000000291	Phage head-tail joining protein	N/A
Pfam	UHGV-0179447_47	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0179447_47	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0179447_47	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0179447_47	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0179447_48	phrog_5	45.3	0.0000000000023	tail completion or Neck1 protein	connector
UniRef90	UHGV-0179447_48	UniRef90_UPI001B17C60C	100.0	1.28e-24	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0179447_48	1095747.HMPREF1049_2007	101.0	1.3e-25	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0179447_48	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0179447_48	PF17395,TIGR01725,COG5005	N/A	N/A	N/A	N/A
Pfam	UHGV-0179447_49	PF20765	N/A	N/A	N/A	DUF6838
structural_annotation	UHGV-0179447_49	PF20765,TIGR01633,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0179447_50	phrog_1480	185.4	0	tail sheath	tail
UniRef90	UHGV-0179447_50	UniRef90_A0A7X2XHA8	158.0	3.57331e-43	Phage tail sheath protein	N/A
eggNOG-mapper	UHGV-0179447_50	1294142.CINTURNW_0297	117.0	1.76e-28	Phage tail sheath C-terminal domain	N/A
structural_annotation	UHGV-0179447_50	PF04984,COG3497	N/A	N/A	N/A	N/A