UHGV-0179534 (vOTU-088797)

Viral Genome: UHGV-0179534

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0179534
vOTU ID	vOTU-088797
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_579986
Associated BioSample	SAMN09781726
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.97 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9782
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.39
Jumbo phage	No

Genome content
Genome length (bp)	26,174
GC content	51.90%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	41
CDS density	92%
Average CDS length (bps)	588.88
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 61.97)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0179534_1	phrog_67	40.6	0.000000000041	DNA methyltransferase	other
UniRef90	UHGV-0179534_1	UniRef90_A0A7C1PXZ0	71.2	0.00000000000000548	Site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0179534_1	1125725.HMPREF1325_1312	85.1	9.46e-20	N-4 methylation of cytosine	N/A
COG	UHGV-0179534_1	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0179534_3	PF10781	N/A	N/A	N/A	N/A
PHROG	UHGV-0179534_4	phrog_3136	134.2	4.6e-40	N/A	unknown function
UniRef90	UHGV-0179534_4	UniRef90_A0A3D0HBD2	137.0	5.41e-38	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0179534_4	642492.Clole_1416	65.5	0.0000000000282	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0179534_4	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0179534_4	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0179534_5	PF04570	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0179534_9	693746.OBV_18010	125.0	9.5e-35	N/A	N/A
structural_annotation	UHGV-0179534_9	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0179534_10	phrog_606	83.7	2.2e-24	terminase small subunit	head and packaging
UniRef90	UHGV-0179534_10	UniRef90_UPI00195648BB	175.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0179534_10	397290.C810_05185	145.0	1.74041e-42	DNA-packaging protein gp3	N/A
Pfam	UHGV-0179534_10	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0179534_10	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-0179534_11	K06909	376.3	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0179534_11	phrog_3717	163.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0179534_11	UniRef90_A0A2U1BEH4	717.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0179534_11	33035.JPJF01000106_gene3136	457.0	0	Terminase small subunit	N/A
Pfam	UHGV-0179534_11	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0179534_11	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0179534_11	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0179534_11	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0179534_11	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0179534_12	phrog_533	350.9	0	portal protein	head and packaging
UniRef90	UHGV-0179534_12	UniRef90_UPI0006C81717	714.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0179534_12	1226322.HMPREF1545_00044	615.0	0	N/A	N/A
Pfam	UHGV-0179534_12	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0179534_12	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0179534_15	phrog_8680	234.9	0	N/A	unknown function
UniRef90	UHGV-0179534_15	UniRef90_UPI00189ACAD3	258.0	0	N/A	N/A
eggNOG-mapper	UHGV-0179534_15	411470.RUMGNA_02208	238.0	0	N/A	N/A
Pfam	UHGV-0179534_15	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-0179534_15	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-0179534_17	phrog_581	280.9	0	minor head protein	head and packaging
UniRef90	UHGV-0179534_17	UniRef90_UPI001D080D49	526.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0179534_17	1226322.HMPREF1545_00046	327.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0179534_17	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0179534_17	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0179534_17	PF06152	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0179534_18	PF18152	N/A	N/A	N/A	N/A
PHROG	UHGV-0179534_19	phrog_2303	49.4	0.000000000000056	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0179534_19	1226322.HMPREF1545_00049	182.0	0	N/A	N/A
PHROG	UHGV-0179534_20	phrog_10	164.8	0	major head protein	head and packaging
UniRef90	UHGV-0179534_20	UniRef90_A0A2U1BEF2	536.0	0	HK97 family phage major capsid protein	N/A
eggNOG-mapper	UHGV-0179534_20	1226322.HMPREF1545_00050	478.0	0	Phage capsid family	N/A
Pfam	UHGV-0179534_20	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0179534_20	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
NCBIFam	UHGV-0179534_20	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0179534_20	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0179534_20	PF05065,PF13620,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0179534_21	phrog_541	112.5	2.3e-33	head-tail adaptor	connector
eggNOG-mapper	UHGV-0179534_21	642492.Clole_0822	68.2	0.00000000000098	N/A	N/A
PHROG	UHGV-0179534_22	phrog_3366	88.1	9.6e-26	N/A	unknown function
eggNOG-mapper	UHGV-0179534_22	1226322.HMPREF1545_00053	147.0	1.09301e-43	N/A	N/A
structural_annotation	UHGV-0179534_22	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0179534_23	phrog_556	74.7	1e-21	minor head protein	head and packaging
UniRef90	UHGV-0179534_23	UniRef90_A0A2U1BEM0	183.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0179534_23	1226322.HMPREF1545_00054	150.0	8.40779e-45	Minor capsid protein	N/A
Pfam	UHGV-0179534_23	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0179534_23	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0179534_24	phrog_3266	57.6	2e-16	tail completion	connector
eggNOG-mapper	UHGV-0179534_24	1232443.BAIA02000078_gene24	187.0	0	N/A	N/A
structural_annotation	UHGV-0179534_24	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0179534_25	phrog_3099	92.2	6.5e-27	N/A	unknown function
eggNOG-mapper	UHGV-0179534_25	1226322.HMPREF1545_00056	244.0	0	N/A	N/A
structural_annotation	UHGV-0179534_25	TIGR02126	N/A	N/A	N/A	N/A
PHROG	UHGV-0179534_26	phrog_11299	62.9	5.9e-18	N/A	unknown function
eggNOG-mapper	UHGV-0179534_26	693746.OBV_18160	153.0	0	N/A	N/A
structural_annotation	UHGV-0179534_26	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0179534_27	phrog_706	120.5	1.3e-35	N/A	unknown function
UniRef90	UHGV-0179534_27	UniRef90_UPI00164D7633	224.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0179534_27	1235797.C816_04184	205.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0179534_27	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0179534_27	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0179534_28	phrog_17658	60.9	2.6e-17	N/A	unknown function
eggNOG-mapper	UHGV-0179534_28	768710.DesyoDRAFT_1122	96.7	1.89e-22	N/A	N/A
structural_annotation	UHGV-0179534_28	PF17787,COG2469	N/A	N/A	N/A	N/A
PHROG	UHGV-0179534_29	phrog_1535	84.8	4.3e-30	tail length tape measure protein	tail
UniRef90	UHGV-0179534_29	UniRef90_A0A810PX76	222.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0179534_29	693746.OBV_18190	150.0	1.55e-34	domain protein	N/A
COG	UHGV-0179534_29	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0179534_30	phrog_1194	115.0	3.5e-34	N/A	unknown function
UniRef90	UHGV-0179534_30	UniRef90_A0A4U9RD70	107.0	1.42e-27	Lj965 prophage protein	N/A
eggNOG-mapper	UHGV-0179534_30	469596.HMPREF9488_01317	113.0	7.45e-31	N/A	N/A
Pfam	UHGV-0179534_30	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0179534_30	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0179534_31	phrog_6616	113.5	1.8e-35	tail protein	tail
UniRef90	UHGV-0179534_31	UniRef90_UPI0007AE71C3	65.5	0.000000171	gp58-like family protein	N/A
eggNOG-mapper	UHGV-0179534_31	469596.HMPREF9488_01318	270.0	0	N/A	N/A
structural_annotation	UHGV-0179534_31	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0179534_32	phrog_372	203.2	0	tail protein	tail
UniRef90	UHGV-0179534_32	UniRef90_UPI001CEDF229	202.0	0	N/A	N/A
eggNOG-mapper	UHGV-0179534_32	469596.HMPREF9488_01319	182.0	0	N/A	N/A
Pfam	UHGV-0179534_32	PF05895	N/A	N/A	N/A	DUF859
structural_annotation	UHGV-0179534_32	PF05895,PF08931,MF_04116,NF010681,COG3291	N/A	N/A	N/A	N/A
PHROG	UHGV-0179534_33	phrog_1863	71.7	5.7e-21	N/A	unknown function
eggNOG-mapper	UHGV-0179534_33	718252.FP2_04900	117.0	2.26e-33	N/A	N/A
PHROG	UHGV-0179534_34	phrog_881	87.2	9.7e-26	holin	lysis
UniRef90	UHGV-0179534_34	UniRef90_UPI00189D3A4F	81.6	5.37e-19	phage holin	N/A
eggNOG-mapper	UHGV-0179534_34	476272.RUMHYD_01966	79.7	6.59e-19	Putative phage holin Dp-1	N/A
Pfam	UHGV-0179534_34	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0179534_34	PF16938	N/A	N/A	N/A	N/A
KOfam	UHGV-0179534_35	K01448	70.1	3.2e-20	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0179534_35	phrog_435	98.8	6.9e-29	endolysin	lysis
UniRef90	UHGV-0179534_35	UniRef90_A0A3D5TEB1	415.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0179534_35	697281.Mahau_0053	157.0	4.2039e-45	n-acetylmuramoyl-l-alanine amidase	N/A
Pfam	UHGV-0179534_35	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0179534_35	PF05036	N/A	N/A	SPOR domain	SPOR
COG	UHGV-0179534_35	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0179534_35	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
UniRef90	UHGV-0179534_38	UniRef90_A0A2N5YEP4	52.0	0.0000000847	Toxin-antitoxin system HicB family antitoxin	N/A
eggNOG-mapper	UHGV-0179534_38	595536.ADVE02000001_gene2685	48.9	0.000000495	N/A	N/A
Pfam	UHGV-0179534_38	PF07878	N/A	N/A	CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5	RHH_5
COG	UHGV-0179534_38	COG4453	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0179534_38	PF03869,NF010256,COG4877	N/A	N/A	N/A	N/A
PHROG	UHGV-0179534_40	phrog_3754	113.0	2.2e-33	N/A	unknown function
eggNOG-mapper	UHGV-0179534_40	1226322.HMPREF1545_00073	159.0	0	N/A	N/A
PHROG	UHGV-0179534_41	phrog_21718	108.4	6e-32	N/A	unknown function
eggNOG-mapper	UHGV-0179534_41	397290.C810_05210	81.3	1.8e-17	N/A	N/A