UHGV-0179730 (vOTU-006691)

Viral Genome: UHGV-0179730

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0179730
vOTU ID	vOTU-006691
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_581737
Associated BioSample	SAMN09781749
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9783
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.29
Jumbo phage	No

Genome content
Genome length (bp)	39,865
GC content	51.99%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	64
CDS density	93%
Average CDS length (bps)	581.48
Total tRNA genes	2
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0179730_2	phrog_15303	82.5	3.9e-24	N/A	unknown function
KOfam	UHGV-0179730_4	K07273	168.4	0	acm; lysozyme	N/A
PHROG	UHGV-0179730_4	phrog_291	133.7	1.7e-39	endolysin	lysis
UniRef90	UHGV-0179730_4	UniRef90_UPI001D0EE7D8	265.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0179730_4	748224.HMPREF9436_00154	248.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0179730_4	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0179730_4	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0179730_4	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0179730_7	phrog_1067	173.5	0	minor head protein	head and packaging
UniRef90	UHGV-0179730_7	UniRef90_A0A2A7AM44	706.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0179730_7	1123263.AUKY01000068_gene489	191.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0179730_7	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0179730_7	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0179730_7	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0179730_7	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0179730_8	phrog_33	76.3	6.9e-22	distal tail protein Dit	tail
UniRef90	UHGV-0179730_8	UniRef90_A0A173Z1X4	138.0	8.54e-37	Phage-related protein	N/A
eggNOG-mapper	UHGV-0179730_8	908340.HMPREF9406_2569	90.1	4.93e-19	phage tail	N/A
NCBIFam	UHGV-0179730_8	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0179730_8	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0179730_8	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0179730_9	phrog_9959	86.9	1.2e-25	tail length tape measure protein	tail
UniRef90	UHGV-0179730_9	UniRef90_A0A2A7ALS3	842.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0179730_9	596328.HMPREF0578_1241	167.0	1.8e-39	phage tail tape measure protein	N/A
Pfam	UHGV-0179730_9	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0179730_9	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0179730_9	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0179730_9	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0179730_12	phrog_88	94.6	1.1e-27	major tail protein	tail
UniRef90	UHGV-0179730_12	UniRef90_G9YSC5	111.0	2.89e-27	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0179730_12	508419.F8J168_9CAUD	69.3	0.00000000000566	N/A	N/A
NCBIFam	UHGV-0179730_12	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0179730_12	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0179730_13	phrog_5	48.5	0.000000000000073	tail completion or Neck1 protein	connector
UniRef90	UHGV-0179730_13	UniRef90_A0A1C6FG30	117.0	3.43e-30	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0179730_13	33035.JPJF01000039_gene277	112.0	3.68e-29	N/A	N/A
structural_annotation	UHGV-0179730_13	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0179730_14	999413.HMPREF1094_02005	66.2	0.00000000000114	N/A	N/A
structural_annotation	UHGV-0179730_14	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0179730_15	phrog_19734	90.4	1.9e-26	N/A	unknown function
UniRef90	UHGV-0179730_15	UniRef90_A0A0D8I708	79.0	2.66e-16	Phage head-tail joining protein	N/A
eggNOG-mapper	UHGV-0179730_15	349161.Dred_2602	72.8	0.0000000000000109	N/A	N/A
structural_annotation	UHGV-0179730_15	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0179730_16	phrog_749	60.0	3.7e-17	N/A	unknown function
UniRef90	UHGV-0179730_16	UniRef90_UPI00099504CB	52.4	0.00000145	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0179730_16	1211817.CCAT010000053_gene2133	69.3	0.0000000000000614	N/A	N/A
PHROG	UHGV-0179730_17	phrog_10	131.3	1.1e-38	major head protein	head and packaging
UniRef90	UHGV-0179730_17	UniRef90_A0A2A7B712	723.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0179730_17	1235792.C808_00086	447.0	0	Phage capsid family	N/A
Pfam	UHGV-0179730_17	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0179730_17	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0179730_17	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0179730_17	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0179730_17	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0179730_18	K01358	73.0	5.4e-21	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0179730_18	phrog_94	128.7	6.6e-38	head maturation protease	head and packaging
UniRef90	UHGV-0179730_18	UniRef90_UPI001C0ECD60	134.0	5.58e-35	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0179730_18	1232452.BAIB02000007_gene1626	123.0	1.47e-31	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0179730_18	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0179730_18	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0179730_18	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0179730_19	phrog_12	124.3	9.4e-37	portal protein	head and packaging
UniRef90	UHGV-0179730_19	UniRef90_A0A2A7B6S8	550.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0179730_19	349161.Dred_2606	263.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0179730_19	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0179730_19	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0179730_19	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0179730_19	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0179730_20	phrog_9	229.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0179730_20	UniRef90_A0A2A7ALT4	1041.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0179730_20	610130.Closa_0741	624.0	0	Phage Terminase	N/A
Pfam	UHGV-0179730_20	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0179730_20	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0179730_20	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0179730_21	phrog_13845	53.9	0.0000000000000024	N/A	unknown function
eggNOG-mapper	UHGV-0179730_21	1399942.U3PDR2_9CAUD	63.9	0.0000000000179	N/A	N/A
Pfam	UHGV-0179730_21	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0179730_21	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0179730_22	phrog_119	57.7	1.7e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0179730_22	UniRef90_A0A2A7B6I3	227.0	0	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0179730_22	610130.Closa_0739	110.0	1.1e-29	HNH nucleases	N/A
Pfam	UHGV-0179730_22	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0179730_22	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0179730_25	phrog_3136	131.8	1.6e-39	N/A	unknown function
UniRef90	UHGV-0179730_25	UniRef90_A0A6N7TMC2	147.0	1.37005e-41	ASCH domain-containing protein	N/A
COG	UHGV-0179730_25	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0179730_25	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0179730_27	PF04545	N/A	N/A	N/A	N/A
KOfam	UHGV-0179730_28	K03497	88.0	1.9e-25	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0179730_28	phrog_4715	113.2	2.2e-33	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0179730_28	UniRef90_A0A2A7AMC5	280.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0179730_28	411471.SUBVAR_05842	170.0	2.8026e-45	ParB-like nuclease domain	N/A
Pfam	UHGV-0179730_28	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0179730_28	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0179730_28	PF02195,MF_02015,TIGR03764,COG1475	N/A	N/A	N/A	N/A
UniRef90	UHGV-0179730_29	UniRef90_UPI001C009709	107.0	4.34e-27	N/A	N/A
KOfam	UHGV-0179730_30	K03496	198.2	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0179730_30	phrog_164	150.7	9.80909e-45	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0179730_30	UniRef90_A0A2A7B6H3	354.0	0	AAA_31 domain-containing protein	N/A
eggNOG-mapper	UHGV-0179730_30	411471.SUBVAR_05839	234.0	0	AAA domain	N/A
Pfam	UHGV-0179730_30	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0179730_30	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0179730_30	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
PHROG	UHGV-0179730_32	phrog_6969	58.4	1e-16	N/A	unknown function
eggNOG-mapper	UHGV-0179730_32	748224.HMPREF9436_00735	155.0	1.24996e-42	N/A	N/A
Pfam	UHGV-0179730_32	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
Pfam	UHGV-0179730_32	PF19481	N/A	N/A	N/A	DUF6017
COG	UHGV-0179730_32	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0179730_32	PF19481,PF01978,MF_01819,TIGR01610,COG5625	N/A	N/A	N/A	N/A
KOfam	UHGV-0179730_33	K03111	145.7	4.59626e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0179730_33	phrog_44	147.7	5.46506e-44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0179730_33	UniRef90_A0A844DI52	219.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0179730_33	718252.FP2_06770	213.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0179730_33	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0179730_33	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0179730_33	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0179730_33	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0179730_33	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0179730_34	phrog_7566	87.1	1.3e-25	N/A	unknown function
eggNOG-mapper	UHGV-0179730_34	411471.SUBVAR_05830	106.0	1.59e-28	N/A	N/A
PHROG	UHGV-0179730_37	phrog_72	46.4	0.00000000000065	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0179730_37	411471.SUBVAR_05829	141.0	5.4e-40	N/A	N/A
structural_annotation	UHGV-0179730_37	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0179730_38	phrog_14970	49.2	0.0000000000001	N/A	unknown function
COG	UHGV-0179730_38	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0179730_38	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0179730_47	PF21291,TIGR03070,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0179730_48	phrog_8	45.8	0.0000000000013	transcriptional regulator	transcription regulation
UniRef90	UHGV-0179730_48	UniRef90_A0A2A7AM72	132.0	6.89e-38	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0179730_48	1378168.N510_01712	72.4	0.0000000000000753	N/A	N/A
Pfam	UHGV-0179730_48	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0179730_48	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0179730_49	PF21441,TIGR04176,COG1846	N/A	N/A	N/A	N/A
KOfam	UHGV-0179730_53	K02342	80.5	2e-23	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-0179730_53	phrog_192	91.7	7.2e-27	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0179730_53	UniRef90_E1VK86	67.0	0.0000000102	Exonuclease domain in DNA-polymerase alpha and epsilon chain	N/A
eggNOG-mapper	UHGV-0179730_53	665956.HMPREF1032_02791	122.0	3.82e-28	N/A	N/A
PADLOC	UHGV-0179730_53	cd06127	73.9	4.5e-21	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-0179730_53	PF00929	N/A	N/A	Exonuclease	RNase_T
Pfam	UHGV-0179730_53	PF00533	N/A	N/A	BRCA1 C Terminus (BRCT) domain	BRCT
COG	UHGV-0179730_53	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A
structural_annotation	UHGV-0179730_53	PF13361,PF00533,MF_00157,NF008746,COG2925	N/A	N/A	N/A	N/A
PHROG	UHGV-0179730_56	phrog_1373	43.0	0.0000000000026	transcriptional regulator	transcription regulation
UniRef90	UHGV-0179730_56	UniRef90_A0A2A7AM70	189.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0179730_56	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0179730_56	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0179730_56	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0179730_57	K14059	196.9	0	int; integrase	N/A
PHROG	UHGV-0179730_57	phrog_1	172.4	0	integrase	integration and excision
UniRef90	UHGV-0179730_57	UniRef90_A0A367GI93	238.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0179730_57	1507.HMPREF0262_00307	179.0	0	Phage integrase family	N/A
Pfam	UHGV-0179730_57	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0179730_57	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0179730_57	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0179730_57	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0179730_58	UniRef90_A0A8F0WD75	73.9	0.000000000000345	RNA polymerase sigma factor/Ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0179730_58	1408437.JNJN01000043_gene801	95.9	2.55e-22	N/A	N/A
structural_annotation	UHGV-0179730_59	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0179730_60	phrog_16490	54.1	0.0000000000000034	N/A	unknown function
PHROG	UHGV-0179730_61	phrog_22984	54.3	0.0000000000000018	N/A	unknown function
UniRef90	UHGV-0179730_63	UniRef90_A0A1Y3R5J8	50.8	0.000000457	RHH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0179730_63	1160721.RBI_I00206	59.7	0.0000000000253	N/A	N/A
structural_annotation	UHGV-0179730_63	PF10723	N/A	N/A	N/A	N/A