UHGV-0179911 (vOTU-129473)

Viral Genome: UHGV-0179911

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0179911
vOTU ID	vOTU-129473
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_580035
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.78 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9783
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.24
Jumbo phage	No

Genome content
Genome length (bp)	48,288
GC content	49.13%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	91
CDS density	85%
Average CDS length (bps)	449.01
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 83.78)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0179911_3	PF19586,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0179911_4	UniRef90_R6N215	81.6	7.46e-18	Phage QLRG family putative DNA packaging	N/A
structural_annotation	UHGV-0179911_4	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0179911_5	phrog_29	179.7	0	major head protein	head and packaging
UniRef90	UHGV-0179911_5	UniRef90_A0A2Z4QBB4	372.0	0	Major capsid protein E	N/A
eggNOG-mapper	UHGV-0179911_5	1347368.HG964404_gene4993	263.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0179911_5	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0179911_5	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0179911_9	phrog_64	147.0	9.94922e-44	portal protein	head and packaging
UniRef90	UHGV-0179911_9	UniRef90_A0A371ILT4	326.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0179911_9	1121866.AUGK01000003_gene1429	275.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0179911_9	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0179911_9	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0179911_12	phrog_38	175.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0179911_12	UniRef90_UPI000419A6BC	431.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0179911_12	1121866.AUGK01000003_gene1428	431.0	0	chromosome segregation	N/A
COG	UHGV-0179911_12	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0179911_12	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0179911_14	NF009949	N/A	N/A	N/A	N/A
KOfam	UHGV-0179911_15	K14060	139.1	4.30002e-41	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0179911_15	phrog_125	159.9	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0179911_15	UniRef90_A0A3D0LYX8	215.0	0	Resolvase	N/A
eggNOG-mapper	UHGV-0179911_15	411469.EUBHAL_01860	196.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0179911_15	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0179911_15	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0179911_15	PF00239,PF02796,MF_00489,NF009949,COG1961	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0179911_16	PF20075	N/A	N/A	N/A	N/A
Pfam	UHGV-0179911_18	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
structural_annotation	UHGV-0179911_18	PF01402,NF041284,COG4710	N/A	N/A	N/A	N/A
KOfam	UHGV-0179911_19	K07741	71.1	3.8e-20	antB; anti-repressor protein	N/A
PHROG	UHGV-0179911_19	phrog_130	233.3	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0179911_19	UniRef90_A0A8D4D1X2	261.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0179911_19	1289596.M1PKL6_9CAUD	256.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0179911_19	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0179911_19	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
structural_annotation	UHGV-0179911_19	PF02498,PF03374,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0179911_20	PF12869,MF_00720,NF040991,COG4085	N/A	N/A	N/A	N/A
PHROG	UHGV-0179911_21	phrog_14275	51.8	0.000000000000002	N/A	unknown function
eggNOG-mapper	UHGV-0179911_21	1280676.AUJO01000001_gene2313	65.5	0.000000000689	N/A	N/A
structural_annotation	UHGV-0179911_21	PF13157,MF_01537,NF007875,COG3123	N/A	N/A	N/A	N/A
PHROG	UHGV-0179911_25	phrog_434	42.8	0.000000000009	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0179911_25	1519439.JPJG01000044_gene958	50.4	0.000000558	N/A	N/A
structural_annotation	UHGV-0179911_27	PF17340	N/A	N/A	N/A	N/A
PHROG	UHGV-0179911_28	phrog_1709	58.3	1.5e-16	N/A	unknown function
eggNOG-mapper	UHGV-0179911_28	1280686.AUKE01000002_gene1328	73.6	7.74e-16	N/A	N/A
UniRef90	UHGV-0179911_32	UniRef90_UPI0012DD33A2	303.0	0	restriction endonuclease subunit M	N/A
eggNOG-mapper	UHGV-0179911_32	596329.HMPREF0631_0252	211.0	0	restriction endonuclease	N/A
PADLOC	UHGV-0179911_32	MTase_II_00176	160.3	0	Type II methyltransferase	RM
COG	UHGV-0179911_32	COG1002	N/A	N/A	Type II restriction/modification system, endonuclease and methylase domains	N/A
structural_annotation	UHGV-0179911_34	PF16677	N/A	N/A	N/A	N/A
Pfam	UHGV-0179911_35	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0179911_35	PF20331,COG5264	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0179911_36	MF_00085,TIGR00037,COG0231	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0179911_38	PF09723	N/A	N/A	N/A	N/A
KOfam	UHGV-0179911_39	K00390	115.1	6e-34	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0179911_39	phrog_424	127.8	8.3e-38	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0179911_39	UniRef90_A0A1Y4LU27	378.0	0	Adenylyl-sulfate reductase	N/A
eggNOG-mapper	UHGV-0179911_39	1408437.JNJN01000032_gene2312	336.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-0179911_39	BrxP_00001	80.1	8.1e-24	BrxP	BREX
Pfam	UHGV-0179911_39	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0179911_39	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0179911_39	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0179911_42	PF11998,COG5420	N/A	N/A	N/A	N/A
PHROG	UHGV-0179911_44	phrog_843	61.6	1e-17	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0179911_44	UniRef90_UPI001159D907	114.0	9.45e-29	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-0179911_44	929506.CbC4_1203	107.0	7.11e-27	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
structural_annotation	UHGV-0179911_44	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0179911_45	PF20331,COG5264	N/A	N/A	N/A	N/A
PHROG	UHGV-0179911_46	phrog_35094	90.7	2e-26	N/A	unknown function
eggNOG-mapper	UHGV-0179911_46	457424.BFAG_02409	119.0	3.81e-34	N/A	N/A
KOfam	UHGV-0179911_48	K00558	43.7	1.5e-17	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0179911_48	phrog_16427	138.8	6.09565e-43	DNA methyltransferase	other
UniRef90	UHGV-0179911_48	UniRef90_D4K5C7	401.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0179911_48	657322.FPR_26610	401.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
Pfam	UHGV-0179911_48	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0179911_48	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
KOfam	UHGV-0179911_49	K00558	80.4	1.5e-23	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0179911_49	phrog_116	86.6	2.4e-25	DNA methyltransferase	other
UniRef90	UHGV-0179911_49	UniRef90_A0A1Q6PX61	303.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0179911_49	657322.FPR_23130	219.0	0	N/A	N/A
PADLOC	UHGV-0179911_49	oMTase_00004	147.9	1.20512e-43	orphan methyltransferase	RM
Pfam	UHGV-0179911_49	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
PHROG	UHGV-0179911_50	phrog_18107	67.4	3.3e-19	N/A	unknown function
UniRef90	UHGV-0179911_50	UniRef90_UPI00058F46CC	85.5	1.91e-17	N/A	N/A
eggNOG-mapper	UHGV-0179911_50	903814.ELI_1274	151.0	3.64338e-44	N/A	N/A
structural_annotation	UHGV-0179911_50	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0179911_51	phrog_2872	236.7	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0179911_51	UniRef90_A0A8J6JIF1	266.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0179911_51	754027.HMPREF9554_00709	210.0	0	N/A	N/A
Pfam	UHGV-0179911_51	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0179911_51	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0179911_53	PF14143	N/A	N/A	N/A	N/A
Pfam	UHGV-0179911_54	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0179911_54	PF13443,TIGR02684,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0179911_58	PF10922	N/A	N/A	N/A	N/A
PHROG	UHGV-0179911_59	phrog_63	100.0	3.7e-29	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0179911_59	UniRef90_A0A4V2KLN3	128.0	4.08e-33	Rha family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0179911_59	903814.ELI_2129	123.0	6.17e-32	Phage regulatory protein Rha (Phage_pRha)	N/A
Pfam	UHGV-0179911_59	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
Pfam	UHGV-0179911_59	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0179911_59	COG3645	N/A	N/A	Phage antirepressor protein YoqD, KilAC domain	N/A
PHROG	UHGV-0179911_60	phrog_518	43.4	0.0000000000072	Rha-like transcriptional regulator	transcription regulation
UniRef90	UHGV-0179911_60	UniRef90_UPI0012DF9177	75.5	9.92e-17	Rha family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0179911_60	1423775.BAMN01000006_gene1075	60.8	0.000000000163	Phage regulatory protein Rha (Phage_pRha)	N/A
Pfam	UHGV-0179911_60	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
COG	UHGV-0179911_60	COG3645	N/A	N/A	Phage antirepressor protein YoqD, KilAC domain	N/A
PHROG	UHGV-0179911_61	phrog_8	51.2	0.000000000000034	transcriptional regulator	transcription regulation
UniRef90	UHGV-0179911_61	UniRef90_UPI001C009F10	101.0	5.56e-27	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0179911_61	411460.RUMTOR_00063	55.8	0.000000017	helix-turn-helix	N/A
Pfam	UHGV-0179911_61	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0179911_61	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0179911_61	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
COG	UHGV-0179911_62	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0179911_62	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0179911_64	UniRef90_A0A2A7AM70	186.0	0	HTH cro/C1-type domain-containing protein	N/A
structural_annotation	UHGV-0179911_64	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0179911_65	phrog_4402	115.6	4.4e-34	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0179911_65	UniRef90_A0A0H5Q331	235.0	0	Rep_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0179911_65	999413.HMPREF1094_04438	140.0	8.13e-36	Initiator Replication protein	N/A
Pfam	UHGV-0179911_65	PF01051	N/A	N/A	Initiator Replication protein, WH1	Rep3_N
Pfam	UHGV-0179911_65	PF21205	N/A	N/A	Initiator Rep protein, WH2	Rep3_C
COG	UHGV-0179911_65	COG5527	N/A	N/A	Protein involved in initiation of plasmid replication	N/A
structural_annotation	UHGV-0179911_65	PF01051,PF21205,NF010305,COG5527	N/A	N/A	N/A	N/A
KOfam	UHGV-0179911_68	K03496	236.4	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0179911_68	phrog_164	157.7	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0179911_68	UniRef90_A0A1C6BS15	212.0	0	Sporulation initiation inhibitor protein soj	N/A
eggNOG-mapper	UHGV-0179911_68	1408423.JHYA01000021_gene392	192.0	0	Cellulose biosynthesis protein BcsQ	N/A
Pfam	UHGV-0179911_68	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0179911_68	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0179911_68	PF13614,MF_00533,NF010443,COG1192	N/A	N/A	N/A	N/A
Pfam	UHGV-0179911_69	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0179911_69	NF041588	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0179911_70	PF07878	N/A	N/A	N/A	N/A
KOfam	UHGV-0179911_71	K13525	126.0	1.4e-37	VCP, CDC48; transitional endoplasmic reticulum ATPase	N/A
PHROG	UHGV-0179911_71	phrog_3757	202.9	0	N/A	unknown function
UniRef90	UHGV-0179911_71	UniRef90_A0A4Z0Y6M2	353.0	0	ATP-dependent zinc metalloprotease FtsH 3	N/A
eggNOG-mapper	UHGV-0179911_71	768710.DesyoDRAFT_1087	203.0	0	ATPase family associated with various cellular activities (AAA)	N/A
PADLOC	UHGV-0179911_71	IetA_00002	188.5	0	NA	ietAS
Pfam	UHGV-0179911_71	PF00004	N/A	N/A	ATPase family associated with various cellular activities (AAA)	AAA
COG	UHGV-0179911_71	COG0464	N/A	N/A	AAA+-type ATPase, SpoVK/Ycf46/Vps4 family	N/A
structural_annotation	UHGV-0179911_71	PF00004,MF_00553,TIGR01242,COG1222	N/A	N/A	N/A	N/A
PHROG	UHGV-0179911_75	phrog_7070	115.2	1.7e-34	N/A	unknown function
eggNOG-mapper	UHGV-0179911_75	1195072.M4HPW0_9CAUD	93.6	3.2e-23	N/A	N/A
eggNOG-mapper	UHGV-0179911_77	1378168.N510_03079	96.7	1.68e-21	N/A	N/A
eggNOG-mapper	UHGV-0179911_78	1408437.JNJN01000043_gene802	122.0	3.18e-34	N/A	N/A
PHROG	UHGV-0179911_79	phrog_16490	101.3	1.3e-39	N/A	unknown function
eggNOG-mapper	UHGV-0179911_79	1408437.JNJN01000043_gene803	166.0	0	N/A	N/A
PHROG	UHGV-0179911_82	phrog_5765	61.0	1.4e-17	N/A	unknown function
UniRef90	UHGV-0179911_82	UniRef90_UPI001D0EF465	65.9	0.000000000000314	BC1881 family protein	N/A
eggNOG-mapper	UHGV-0179911_82	748727.CLJU_c31430	58.5	0.0000000000296	N/A	N/A
NCBIFam	UHGV-0179911_82	NF033495.1	N/A	N/A	BC1881 family protein	N/A
UniRef90	UHGV-0179911_85	UniRef90_UPI0018835F0C	585.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-0179911_85	411483.FAEPRAA2165_00757	179.0	0	N/A	N/A
structural_annotation	UHGV-0179911_85	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-0179911_86	phrog_15303	117.3	7.6e-35	N/A	unknown function
KOfam	UHGV-0179911_88	K07273	172.7	0	acm; lysozyme	N/A
PHROG	UHGV-0179911_88	phrog_291	144.8	7.39886e-43	endolysin	lysis
UniRef90	UHGV-0179911_88	UniRef90_E2ZES5	337.0	0	Glycosyl hydrolase family 25	N/A
eggNOG-mapper	UHGV-0179911_88	748224.HMPREF9436_00154	337.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0179911_88	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0179911_88	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0179911_88	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0179911_89	phrog_28526	98.1	4.6e-29	N/A	unknown function
UniRef90	UHGV-0179911_89	UniRef90_A0A415D4T1	73.2	3.46e-16	N/A	N/A
eggNOG-mapper	UHGV-0179911_89	748224.HMPREF9436_00155	95.5	7.9e-26	N/A	N/A
Pfam	UHGV-0179911_89	PF04255	N/A	N/A	N/A	DUF433
PHROG	UHGV-0179911_91	phrog_9534	46.2	0.00000000000069	head protein	head and packaging
eggNOG-mapper	UHGV-0179911_91	748224.HMPREF9436_01407	150.0	7.74999e-40	COG NOG18825 non supervised orthologous group	N/A