UHGV-0179927 (vOTU-046690)

Viral Genome: UHGV-0179927

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0179927
vOTU ID	vOTU-046690
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_582516
Associated BioSample	SAMN09781780
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9818
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.67
Jumbo phage	No

Genome content
Genome length (bp)	45,350
GC content	45.99%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	68
CDS density	90%
Average CDS length (bps)	598.50
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0179927_1	phrog_4433	85.0	1.1e-24	N/A	unknown function
eggNOG-mapper	UHGV-0179927_1	886882.PPSC2_p0363	106.0	2.49e-25	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0179927_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
eggNOG-mapper	UHGV-0179927_3	1235798.C817_05488	48.5	0.00000362	N/A	N/A
eggNOG-mapper	UHGV-0179927_5	596152.DesU5LDRAFT_1910	82.4	1.95e-16	N/A	N/A
structural_annotation	UHGV-0179927_5	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
KOfam	UHGV-0179927_6	K07741	117.1	4e-34	antB; anti-repressor protein	N/A
PHROG	UHGV-0179927_6	phrog_130	246.7	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0179927_6	UniRef90_A0A416ZL48	474.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0179927_6	1122146.AUHP01000010_gene1023	283.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0179927_6	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0179927_6	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0179927_6	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0179927_6	PF03374,PF02498,TIGR02681,COG3645	N/A	N/A	N/A	N/A
Pfam	UHGV-0179927_9	PF13455	N/A	N/A	Meiotically up-regulated gene 113	MUG113
structural_annotation	UHGV-0179927_9	PF10544	N/A	N/A	N/A	N/A
KOfam	UHGV-0179927_10	K22300	46.8	0.00000000000067	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-0179927_10	UniRef90_A0A412ELD4	117.0	2.08e-33	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0179927_10	1235801.C822_00106	52.8	0.0000000197	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0179927_10	retron_type_VI_hth_cluster2_1	41.3	0.000000000049	N/A	Retron
Pfam	UHGV-0179927_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0179927_10	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0179927_10	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0179927_11	phrog_2967	47.5	0.00000000000026	transcriptional regulator	transcription regulation
UniRef90	UHGV-0179927_11	UniRef90_A0A416SLU4	171.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0179927_11	476272.RUMHYD_03305	85.9	1.02e-18	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0179927_11	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0179927_11	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0179927_11	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0179927_13	phrog_4	43.6	0.0000000000056	transcriptional repressor	transcription regulation
UniRef90	UHGV-0179927_13	UniRef90_A0A416RX34	479.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0179927_13	742765.HMPREF9457_02739	346.0	0	N/A	N/A
Pfam	UHGV-0179927_13	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0179927_13	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0179927_14	phrog_10292	42.7	0.000000000005	N/A	unknown function
UniRef90	UHGV-0179927_14	UniRef90_A0A416RWX8	227.0	0	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0179927_14	665956.HMPREF1032_00562	116.0	2.05e-31	TM2 domain	N/A
Pfam	UHGV-0179927_14	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-0179927_14	COG2314	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0179927_14	PF05154,PF12773,MF_00788,NF003161	N/A	N/A	N/A	N/A
KOfam	UHGV-0179927_15	K14059	169.8	0	int; integrase	N/A
PHROG	UHGV-0179927_15	phrog_1	154.2	1.4013e-45	integrase	integration and excision
UniRef90	UHGV-0179927_15	UniRef90_A0A416RX95	701.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0179927_15	33035.JPJF01000071_gene4457	392.0	0	Phage integrase family	N/A
Pfam	UHGV-0179927_15	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0179927_15	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0179927_15	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0179927_16	phrog_13890	58.9	3.7e-17	N/A	unknown function
UniRef90	UHGV-0179927_16	UniRef90_A0A1Q9J4Y8	103.0	1.81e-24	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0179927_16	411468.CLOSCI_01452	56.2	0.000000107	N/A	N/A
PHROG	UHGV-0179927_17	phrog_14030	151.5	2.8026e-45	N/A	unknown function
UniRef90	UHGV-0179927_17	UniRef90_A0A373N0W8	1035.0	0	Peptidoglycan-binding protein	N/A
eggNOG-mapper	UHGV-0179927_17	742741.HMPREF9475_00446	231.0	0	N/A	N/A
Pfam	UHGV-0179927_17	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-0179927_17	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
structural_annotation	UHGV-0179927_17	PF18013,PF01471,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0179927_18	phrog_15303	44.5	0.0000000000025	N/A	unknown function
eggNOG-mapper	UHGV-0179927_18	394503.Ccel_3271	66.2	0.00000000000175	N/A	N/A
UniRef90	UHGV-0179927_19	UniRef90_A0A1C5MZC0	195.0	0	N/A	N/A
eggNOG-mapper	UHGV-0179927_19	1235802.C823_01049	186.0	0	N/A	N/A
structural_annotation	UHGV-0179927_19	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-0179927_20	phrog_18444	85.1	4.8e-25	N/A	unknown function
UniRef90	UHGV-0179927_20	UniRef90_UPI00156E9A45	94.4	4.3e-24	peptide chain release factor 2	N/A
eggNOG-mapper	UHGV-0179927_20	1294142.CINTURNW_1043	48.1	0.00000136	N/A	N/A
PHROG	UHGV-0179927_21	phrog_6616	510.9	0	tail protein	tail
UniRef90	UHGV-0179927_21	UniRef90_UPI0015714EA8	827.0	0	tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-0179927_21	1121100.JCM6294_1111	256.0	0	Phage minor structural protein	N/A
COG	UHGV-0179927_21	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0179927_21	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0179927_22	phrog_1194	65.0	1.2e-18	N/A	unknown function
structural_annotation	UHGV-0179927_22	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
KOfam	UHGV-0179927_23	K10421	45.3	0.00000000000054	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-0179927_23	phrog_1535	283.2	0	tail length tape measure protein	tail
UniRef90	UHGV-0179927_23	UniRef90_A0A173R880	357.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0179927_23	476272.RUMHYD_01785	458.0	0	phage tail tape measure protein	N/A
COG	UHGV-0179927_23	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0179927_23	PF11172	N/A	N/A	N/A	N/A
PHROG	UHGV-0179927_24	phrog_706	123.7	1.1e-36	N/A	unknown function
UniRef90	UHGV-0179927_24	UniRef90_UPI00156F9D1C	265.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0179927_24	476272.RUMHYD_01784	212.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0179927_24	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0179927_24	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0179927_25	phrog_11299	104.9	6.5e-31	N/A	unknown function
eggNOG-mapper	UHGV-0179927_25	33035.JPJF01000106_gene3125	101.0	1.24e-25	N/A	N/A
structural_annotation	UHGV-0179927_25	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0179927_26	phrog_3099	121.4	7e-36	N/A	unknown function
eggNOG-mapper	UHGV-0179927_26	476272.RUMHYD_01782	268.0	0	N/A	N/A
structural_annotation	UHGV-0179927_26	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0179927_27	phrog_3266	88.1	8.4e-26	tail completion	connector
eggNOG-mapper	UHGV-0179927_27	476272.RUMHYD_01781	204.0	0	N/A	N/A
structural_annotation	UHGV-0179927_27	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0179927_28	phrog_556	73.2	2.6e-21	minor head protein	head and packaging
UniRef90	UHGV-0179927_28	UniRef90_UPI0008B4CFF0	169.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0179927_28	476272.RUMHYD_01780	208.0	0	N/A	N/A
Pfam	UHGV-0179927_28	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0179927_28	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0179927_29	phrog_3366	88.2	2.8e-27	N/A	unknown function
eggNOG-mapper	UHGV-0179927_29	476272.RUMHYD_01779	192.0	0	N/A	N/A
structural_annotation	UHGV-0179927_29	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0179927_32	phrog_541	97.1	1.1e-28	head-tail adaptor	connector
eggNOG-mapper	UHGV-0179927_32	476272.RUMHYD_01778	203.0	0	N/A	N/A
PHROG	UHGV-0179927_33	phrog_247	282.5	0	major head protein	head and packaging
UniRef90	UHGV-0179927_33	UniRef90_A0A3R6K7E9	640.0	0	Phage coat protein	N/A
eggNOG-mapper	UHGV-0179927_33	1292035.H476_1014	415.0	0	N/A	N/A
COG	UHGV-0179927_33	COG1106	N/A	N/A	ATPase/GTPase, AAA15 family	N/A
structural_annotation	UHGV-0179927_33	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0179927_34	UniRef90_UPI001C0EBA51	248.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0179927_34	742765.HMPREF9457_02126	85.1	8.72e-18	COG NOG36366 non supervised orthologous group	N/A
structural_annotation	UHGV-0179927_36	PF00210,MF_01441,NF011597,COG1528	N/A	N/A	N/A	N/A
PHROG	UHGV-0179927_37	phrog_20016	72.0	7.1e-21	N/A	unknown function
UniRef90	UHGV-0179927_37	UniRef90_A0A316MV88	213.0	0	BclA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0179927_37	397290.C810_05214	67.4	0.00000000000258	N/A	N/A
structural_annotation	UHGV-0179927_37	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0179927_39	476272.RUMHYD_01770	61.6	0.00000000994	N/A	N/A
PHROG	UHGV-0179927_41	phrog_21718	71.2	1.7e-20	N/A	unknown function
eggNOG-mapper	UHGV-0179927_41	1235790.C805_00058	101.0	4.38e-25	N/A	N/A
UniRef90	UHGV-0179927_42	UniRef90_A0A416S3A4	211.0	0	CTP synthase	N/A
eggNOG-mapper	UHGV-0179927_42	476272.RUMHYD_01766	57.0	0.00000000423	N/A	N/A
PHROG	UHGV-0179927_43	phrog_581	238.5	0	minor head protein	head and packaging
UniRef90	UHGV-0179927_43	UniRef90_A0A416S3D5	785.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0179927_43	476272.RUMHYD_01761	427.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0179927_43	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0179927_43	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0179927_43	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0179927_44	phrog_1129	75.5	5e-22	holin	lysis
UniRef90	UHGV-0179927_44	UniRef90_A0A416S3E1	169.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0179927_44	742740.HMPREF9474_03522	101.0	3.65e-27	N/A	N/A
Pfam	UHGV-0179927_44	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0179927_44	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0179927_45	phrog_533	278.5	0	portal protein	head and packaging
UniRef90	UHGV-0179927_45	UniRef90_A0A1C6CDM8	633.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0179927_45	33035.JPJF01000106_gene3135	488.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0179927_45	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0179927_47	K06909	380.3	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0179927_47	phrog_3717	151.6	4.2039e-45	terminase large subunit	head and packaging
UniRef90	UHGV-0179927_47	UniRef90_A0A416S378	1038.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0179927_47	33035.JPJF01000106_gene3136	548.0	0	Terminase small subunit	N/A
Pfam	UHGV-0179927_47	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0179927_47	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0179927_47	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0179927_47	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0179927_47	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0179927_49	557436.Lreu_0830	80.5	5.05e-18	N/A	N/A
PHROG	UHGV-0179927_50	phrog_8680	246.2	0	N/A	unknown function
UniRef90	UHGV-0179927_50	UniRef90_A0A416S3B0	402.0	0	N/A	N/A
eggNOG-mapper	UHGV-0179927_50	411470.RUMGNA_02208	252.0	0	N/A	N/A
Pfam	UHGV-0179927_50	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-0179927_50	PF14386	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0179927_52	476272.RUMHYD_01751	120.0	1.9e-34	N/A	N/A
PHROG	UHGV-0179927_56	phrog_4601	41.5	0.000000000025	N/A	unknown function
PHROG	UHGV-0179927_58	phrog_918	93.1	1.8e-27	N/A	unknown function
UniRef90	UHGV-0179927_58	UniRef90_UPI00156D5D02	171.0	0	N/A	N/A
eggNOG-mapper	UHGV-0179927_58	1256908.HMPREF0373_00480	163.0	0	N/A	N/A
Pfam	UHGV-0179927_58	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0179927_58	PF19791	N/A	N/A	N/A	N/A
KOfam	UHGV-0179927_59	K00390	82.8	3.2e-25	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0179927_59	phrog_424	97.4	9.9e-29	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0179927_59	UniRef90_A0A3R6M557	668.0	0	PAPS_reduct domain-containing protein	N/A
eggNOG-mapper	UHGV-0179927_59	1235800.C819_02256	608.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-0179927_59	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0179927_59	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0179927_59	PF01507,MF_00063,TIGR00434,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0179927_62	phrog_11769	153.5	0	N/A	unknown function
UniRef90	UHGV-0179927_62	UniRef90_A0A416S3A2	484.0	0	Phage_rep_org_N domain-containing protein	N/A
eggNOG-mapper	UHGV-0179927_62	411470.RUMGNA_02197	176.0	0	phage replisome	N/A
Pfam	UHGV-0179927_62	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-0179927_62	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
structural_annotation	UHGV-0179927_62	PF09681,TIGR01714,COG3388	N/A	N/A	N/A	N/A
PHROG	UHGV-0179927_63	phrog_244	86.2	4.1e-25	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0179927_63	UniRef90_A0A841R0Q1	113.0	1.37e-29	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-0179927_63	887929.HMP0721_1279	119.0	8.99e-33	N/A	N/A
structural_annotation	UHGV-0179927_63	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-0179927_64	phrog_398	200.3	0	N/A	unknown function
UniRef90	UHGV-0179927_64	UniRef90_UPI00068C968F	259.0	0	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-0179927_64	33035.JPJF01000122_gene2462	259.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-0179927_64	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-0179927_64	PF16784	N/A	N/A	N/A	N/A
PHROG	UHGV-0179927_65	phrog_155	118.3	7.3e-35	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0179927_65	UniRef90_A0A396QXQ1	207.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-0179927_65	762982.HMPREF9442_00551	125.0	9.95e-34	Erf family	N/A
Pfam	UHGV-0179927_65	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0179927_65	PF04404,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0179927_68	phrog_27197	55.0	0.0000000000000017	N/A	unknown function
eggNOG-mapper	UHGV-0179927_68	886882.PPSC2_p0363	67.0	0.00000000000496	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0179927_68	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A