UHGV-0180097 (vOTU-061408)

Viral Genome: UHGV-0180097

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0180097
vOTU ID	vOTU-061408
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_580750
Associated BioSample	SAMN09781734
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.11 (High-quality)
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9799
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.72
Jumbo phage	No

Genome content
Genome length (bp)	37,855
GC content	51.94%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	66
CDS density	91%
Average CDS length (bps)	521.32
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 93.11)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0180097_1	phrog_16304	60.7	3.2e-17	N/A	unknown function
UniRef90	UHGV-0180097_1	UniRef90_A0A843HC32	53.9	0.000000481	N/A	N/A
eggNOG-mapper	UHGV-0180097_1	445972.ANACOL_03338	55.5	0.00000022	DnaD domain protein	N/A
Pfam	UHGV-0180097_1	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-0180097_1	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0180097_1	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-0180097_2	phrog_190	126.0	2.6e-37	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0180097_2	UniRef90_A0A3R6WN18	147.0	2.67648e-43	N/A	N/A
eggNOG-mapper	UHGV-0180097_2	445974.CLORAM_02947	102.0	2.3e-26	N/A	N/A
Pfam	UHGV-0180097_2	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0180097_2	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-0180097_3	phrog_18107	103.1	3.2e-30	N/A	unknown function
eggNOG-mapper	UHGV-0180097_3	476272.RUMHYD_01739	154.0	1.12104e-44	N/A	N/A
structural_annotation	UHGV-0180097_3	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0180097_4	phrog_2872	226.6	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0180097_4	UniRef90_A0A843H8D6	285.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0180097_4	1345695.CLSA_c30180	274.0	0	AAA domain	N/A
structural_annotation	UHGV-0180097_4	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0180097_5	phrog_253	136.6	1.4e-40	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0180097_5	UniRef90_UPI00051BDF29	127.0	2.21e-34	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0180097_5	397290.C810_05162	133.0	1.83e-37	Siphovirus Gp157	N/A
Pfam	UHGV-0180097_5	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0180097_5	PF05565	N/A	N/A	N/A	N/A
KOfam	UHGV-0180097_6	K07729	53.8	0.0000000000000049	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0180097_6	phrog_2439	46.8	0.00000000000037	transcriptional regulator	transcription regulation
UniRef90	UHGV-0180097_6	UniRef90_UPI0002EC8427	53.1	0.0000000831	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0180097_6	1235794.C811_01748	53.1	0.0000000703	Putative zinc ribbon domain	N/A
PADLOC	UHGV-0180097_6	retron_type_VI_hth_cluster2_1	44.0	0.0000000000066	N/A	Retron
Pfam	UHGV-0180097_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0180097_6	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0180097_6	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0180097_10	PF20432,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0180097_12	phrog_8	44.1	0.000000000005	transcriptional regulator	transcription regulation
UniRef90	UHGV-0180097_12	UniRef90_A0A372V3Y4	71.6	0.0000000000000782	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0180097_12	97138.C820_00203	55.8	0.0000000318	Transcriptional	N/A
Pfam	UHGV-0180097_12	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0180097_12	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0180097_12	PF01381,NF041951,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0180097_13	PF09202,MF_01177,TIGR02702,COG1846	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0180097_17	1507.HMPREF0262_00289	54.7	0.00000421	sequence-specific DNA binding	N/A
Pfam	UHGV-0180097_17	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0180097_17	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
structural_annotation	UHGV-0180097_17	PF12844,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0180097_18	K14059	141.7	9.69979e-42	int; integrase	N/A
PHROG	UHGV-0180097_18	phrog_1	146.2	2.99878e-43	integrase	integration and excision
UniRef90	UHGV-0180097_18	UniRef90_A0A3D2HVQ9	390.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0180097_18	643648.Slip_1975	79.7	0.0000000000001	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0180097_18	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0180097_18	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0180097_18	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0180097_20	UniRef90_A0A174XWS3	84.0	6.38e-19	Bacterial regulatory proteins, luxR family	N/A
eggNOG-mapper	UHGV-0180097_20	485916.Dtox_2202	64.3	0.000000000132	Plasmid pRiA4b ORF-3-like protein	N/A
Pfam	UHGV-0180097_20	PF13936	N/A	N/A	Helix-turn-helix domain	HTH_38
Pfam	UHGV-0180097_20	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
structural_annotation	UHGV-0180097_20	PF00196,NF040595,COG2771	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0180097_25	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0180097_26	phrog_20016	171.2	0	N/A	unknown function
UniRef90	UHGV-0180097_26	UniRef90_A0A345BPX4	151.0	2.24208e-44	Carbohydrate binding domain/collagen triple helix repeat protein	N/A
eggNOG-mapper	UHGV-0180097_26	1226322.HMPREF1545_00077	149.0	2.24208e-44	N/A	N/A
structural_annotation	UHGV-0180097_26	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0180097_27	phrog_16490	149.8	1.96182e-44	N/A	unknown function
eggNOG-mapper	UHGV-0180097_27	1408437.JNJN01000043_gene803	98.2	8.35e-22	N/A	N/A
PHROG	UHGV-0180097_28	phrog_22984	63.9	2.3e-18	N/A	unknown function
PHROG	UHGV-0180097_29	phrog_21718	47.5	0.00000000000032	N/A	unknown function
UniRef90	UHGV-0180097_29	UniRef90_A0A285PT36	85.1	2.91e-18	Consensus disorder prediction	N/A
PHROG	UHGV-0180097_30	phrog_3754	97.7	1.2e-28	N/A	unknown function
eggNOG-mapper	UHGV-0180097_30	476272.RUMHYD_01764	137.0	3.46e-40	N/A	N/A
structural_annotation	UHGV-0180097_31	PF01047,MF_00620,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-0180097_32	phrog_6918	87.8	8.3e-26	holin	lysis
UniRef90	UHGV-0180097_32	UniRef90_UPI001897547F	98.6	1.69e-24	phage holin, LLH family	N/A
eggNOG-mapper	UHGV-0180097_32	1297617.JPJD01000020_gene301	92.8	6.5e-23	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-0180097_32	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-0180097_32	PF09682,TIGR01673	N/A	N/A	N/A	N/A
PHROG	UHGV-0180097_33	phrog_4105	101.8	4.2e-30	N/A	unknown function
UniRef90	UHGV-0180097_33	UniRef90_A0A8D9UHA9	123.0	1.54e-34	Holin protein	N/A
eggNOG-mapper	UHGV-0180097_33	742733.HMPREF9469_05011	132.0	6.63e-39	N/A	N/A
KOfam	UHGV-0180097_34	K08640	88.6	1.3e-25	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-0180097_34	phrog_894	50.8	0.000000000000026	endolysin	lysis
UniRef90	UHGV-0180097_34	UniRef90_UPI001C12323B	231.0	0	D-Ala-D-Ala carboxypeptidase family metallohydrolase	N/A
eggNOG-mapper	UHGV-0180097_34	1121423.JONT01000035_gene915	94.4	1.74e-21	N/A	N/A
Pfam	UHGV-0180097_34	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
Pfam	UHGV-0180097_34	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-0180097_34	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0180097_34	PF08291,PF01471,TIGR02869,COG3108	N/A	N/A	N/A	N/A
KOfam	UHGV-0180097_35	K16617	42.5	0.0000000000035	COL13A; collagen type XIII alpha	N/A
PHROG	UHGV-0180097_35	phrog_10972	50.5	0.000000000000044	tail fiber protein	tail
eggNOG-mapper	UHGV-0180097_35	1519439.JPJG01000060_gene1892	58.9	0.0000026	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-0180097_35	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0180097_35	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
PHROG	UHGV-0180097_36	phrog_2310	54.7	0.000000000000001	N/A	unknown function
eggNOG-mapper	UHGV-0180097_36	1151292.QEW_0364	50.1	0.000000156	N/A	N/A
structural_annotation	UHGV-0180097_37	PF03425,NF038128,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0180097_38	phrog_9534	127.3	1.6e-37	head protein	head and packaging
eggNOG-mapper	UHGV-0180097_38	864178.E2ELJ8_9CAUD	85.9	2.02e-16	cell adhesion	N/A
PHROG	UHGV-0180097_39	phrog_538	108.6	3.2e-32	minor tail protein	tail
UniRef90	UHGV-0180097_39	UniRef90_UPI001C113FEF	369.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0180097_39	931626.Awo_c34990	67.4	0.00000000136	Siphovirus ReqiPepy6 Gp37-like protein	N/A
Pfam	UHGV-0180097_39	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0180097_39	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0180097_40	phrog_36410	50.2	0.000000000000034	N/A	unknown function
UniRef90	UHGV-0180097_40	UniRef90_UPI001C0FCFFA	344.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-0180097_40	665956.HMPREF1032_02941	105.0	6.65e-24	Phage tail protein	N/A
structural_annotation	UHGV-0180097_40	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0180097_41	phrog_991	181.0	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0180097_41	1201292.DR75_1631	213.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0180097_41	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0180097_41	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0180097_41	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0180097_41	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0180097_44	phrog_885	62.4	5.8e-18	major tail protein	tail
UniRef90	UHGV-0180097_44	UniRef90_A0A843J9F0	125.0	4.2e-32	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0180097_44	1111121.HMPREF1247_0789	145.0	1.37005e-41	N/A	N/A
structural_annotation	UHGV-0180097_44	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0180097_45	phrog_17405	40.9	0.00000000003	head protein	head and packaging
structural_annotation	UHGV-0180097_45	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0180097_46	phrog_17977	74.2	1.4e-21	N/A	unknown function
UniRef90	UHGV-0180097_46	UniRef90_A0A285PT57	134.0	1.2e-38	Phage head-tail joining protein	N/A
Pfam	UHGV-0180097_46	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
structural_annotation	UHGV-0180097_46	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0180097_48	phrog_544	116.8	1.9e-34	major head protein	head and packaging
UniRef90	UHGV-0180097_48	UniRef90_A0A395X7A1	337.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0180097_48	476272.RUMHYD_01776	306.0	0	N/A	N/A
structural_annotation	UHGV-0180097_48	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0180097_49	PF06810	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0180097_50	PF18152	N/A	N/A	N/A	N/A
PHROG	UHGV-0180097_51	phrog_1233	80.7	2.2e-23	N/A	unknown function
eggNOG-mapper	UHGV-0180097_51	1232443.BAIA02000078_gene33	120.0	4.36e-34	N/A	N/A
PHROG	UHGV-0180097_52	phrog_5	56.6	6.5e-16	tail completion or Neck1 protein	connector
UniRef90	UHGV-0180097_52	UniRef90_A4E784	86.3	3.82e-19	HK97 gp10 family phage protein	N/A
NCBIFam	UHGV-0180097_52	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
COG	UHGV-0180097_52	COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0180097_52	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0180097_53	938288.HG326225_gene1282	60.8	0.0000000000094	N/A	N/A
PHROG	UHGV-0180097_54	phrog_595	106.7	3e-31	head maturation protease	head and packaging
UniRef90	UHGV-0180097_54	UniRef90_A0A3A9EHQ6	236.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0180097_54	1504822.CCNO01000013_gene286	213.0	0	cell adhesion	N/A
Pfam	UHGV-0180097_54	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0180097_54	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0180097_54	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0180097_55	phrog_64	147.6	4.90454e-44	portal protein	head and packaging
UniRef90	UHGV-0180097_55	UniRef90_A0A856HZB4	445.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0180097_55	673376.F2VHW1_9CAUD	210.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0180097_55	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0180097_55	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0180097_56	phrog_38	174.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0180097_56	UniRef90_UPI00046F67CE	390.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0180097_56	1235792.C808_05331	394.0	0	N/A	N/A
structural_annotation	UHGV-0180097_56	PF17289,PF05876,MF_04147,NF033889,COG5323	N/A	N/A	N/A	N/A
KOfam	UHGV-0180097_57	K07474	135.1	8.5e-40	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0180097_57	phrog_51	133.7	1e-39	terminase small subunit	head and packaging
UniRef90	UHGV-0180097_57	UniRef90_A0A3R6SKK4	161.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0180097_57	445971.ANASTE_00710	133.0	8.3e-38	Terminase small subunit	N/A
Pfam	UHGV-0180097_57	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0180097_57	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0180097_57	PF03592,COG3728	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0180097_58	742738.HMPREF9460_02503	61.6	0.0000000000522	N/A	N/A
UniRef90	UHGV-0180097_62	UniRef90_A0A3A6ECV8	80.5	1.88e-17	N/A	N/A
eggNOG-mapper	UHGV-0180097_62	411470.RUMGNA_00214	57.0	0.0000000318	N/A	N/A
Pfam	UHGV-0180097_62	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-0180097_63	phrog_3136	136.6	7.00005e-41	N/A	unknown function
UniRef90	UHGV-0180097_63	UniRef90_A0A3D0HBD2	128.0	1.6e-34	ASCH domain-containing protein	N/A
Pfam	UHGV-0180097_63	PF04266	N/A	N/A	ASCH domain	ASCH
COG	UHGV-0180097_63	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0180097_63	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0180097_64	phrog_599	46.0	0.0000000000011	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-0180097_64	1235790.C805_00069	52.8	0.0000000459	Restriction alleviation protein Lar	N/A
Pfam	UHGV-0180097_64	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0180097_64	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
structural_annotation	UHGV-0180097_64	PF13211	N/A	N/A	N/A	N/A
PHROG	UHGV-0180097_65	phrog_9298	65.2	8.4e-19	radical SAM domain protein	other
UniRef90	UHGV-0180097_65	UniRef90_A0A841L4D7	282.0	0	Radical SAM superfamily enzyme YgiQ (UPF0313 family)	N/A
eggNOG-mapper	UHGV-0180097_65	742817.HMPREF9449_01796	271.0	0	radical SAM domain protein	N/A
COG	UHGV-0180097_65	COG1032	N/A	N/A	Radical SAM superfamily enzyme YgiQ, UPF0313 family	N/A
structural_annotation	UHGV-0180097_65	PF04055,MF_01864,TIGR04072,COG0621	N/A	N/A	N/A	N/A