UHGV-0180098 (vOTU-029126)

Viral Genome: UHGV-0180098

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0180098
vOTU ID	vOTU-029126
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_580757
Associated BioSample	SAMN09781734
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.88 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9778
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.07
Jumbo phage	No

Genome content
Genome length (bp)	30,050
GC content	52.40%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	41
CDS density	92%
Average CDS length (bps)	677.56
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 73.88)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0180098_2	phrog_13845	55.9	6e-16	N/A	unknown function
eggNOG-mapper	UHGV-0180098_2	1399942.U3PDR2_9CAUD	67.0	0.00000000000192	N/A	N/A
structural_annotation	UHGV-0180098_2	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0180098_3	phrog_9	240.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0180098_3	UniRef90_A0A2A7ALT4	1062.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0180098_3	610130.Closa_0741	636.0	0	Phage Terminase	N/A
Pfam	UHGV-0180098_3	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0180098_3	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0180098_3	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0180098_4	phrog_12	127.4	1.1e-37	portal protein	head and packaging
UniRef90	UHGV-0180098_4	UniRef90_A0A2A7B6S8	553.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0180098_4	349161.Dred_2606	260.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0180098_4	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0180098_4	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0180098_4	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0180098_4	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0180098_5	K01358	72.2	9.6e-21	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0180098_5	phrog_94	128.7	7.1e-38	head maturation protease	head and packaging
UniRef90	UHGV-0180098_5	UniRef90_UPI001C0ECD60	135.0	3.96e-35	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0180098_5	1232452.BAIB02000007_gene1626	126.0	9.59e-33	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0180098_5	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0180098_5	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0180098_5	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0180098_6	phrog_10	132.2	3.7e-39	major head protein	head and packaging
UniRef90	UHGV-0180098_6	UniRef90_A0A2A7B712	716.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0180098_6	1235792.C808_00086	453.0	0	Phage capsid family	N/A
Pfam	UHGV-0180098_6	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0180098_6	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0180098_6	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0180098_6	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0180098_6	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0180098_7	phrog_749	56.4	5.3e-16	N/A	unknown function
UniRef90	UHGV-0180098_7	UniRef90_A0A371IJS1	50.8	0.00000442	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0180098_7	1211817.CCAT010000053_gene2133	65.9	0.0000000000014	N/A	N/A
PHROG	UHGV-0180098_8	phrog_19734	95.1	6.8e-28	N/A	unknown function
UniRef90	UHGV-0180098_8	UniRef90_A0A0D8I708	82.0	1.51e-17	Phage head-tail joining protein	N/A
eggNOG-mapper	UHGV-0180098_8	349161.Dred_2602	76.3	4.44e-16	N/A	N/A
structural_annotation	UHGV-0180098_8	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0180098_9	999413.HMPREF1094_02005	71.2	0.0000000000000125	N/A	N/A
structural_annotation	UHGV-0180098_9	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0180098_10	phrog_5	48.7	0.00000000000014	tail completion or Neck1 protein	connector
UniRef90	UHGV-0180098_10	UniRef90_A0A1C6FG30	135.0	1.59e-37	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0180098_10	908340.HMPREF9406_2573	115.0	1.57e-30	N/A	N/A
structural_annotation	UHGV-0180098_10	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0180098_11	phrog_88	97.3	1.6e-28	major tail protein	tail
UniRef90	UHGV-0180098_11	UniRef90_G9YSC5	107.0	8.91e-26	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0180098_11	508419.F8J168_9CAUD	73.2	0.000000000000205	N/A	N/A
NCBIFam	UHGV-0180098_11	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0180098_11	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0180098_14	phrog_9959	90.7	9.4e-27	tail length tape measure protein	tail
UniRef90	UHGV-0180098_14	UniRef90_A0A2A7ALS3	810.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0180098_14	596328.HMPREF0578_1241	191.0	0	phage tail tape measure protein	N/A
Pfam	UHGV-0180098_14	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0180098_14	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0180098_14	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0180098_14	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0180098_15	phrog_33	80.3	4.5e-23	distal tail protein Dit	tail
UniRef90	UHGV-0180098_15	UniRef90_A0A173Z1X4	141.0	7.7e-38	Phage-related protein	N/A
eggNOG-mapper	UHGV-0180098_15	908340.HMPREF9406_2569	93.2	3.42e-20	phage tail	N/A
NCBIFam	UHGV-0180098_15	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0180098_15	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0180098_15	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0180098_16	phrog_1067	169.3	0	minor head protein	head and packaging
UniRef90	UHGV-0180098_16	UniRef90_A0A2A7AM44	709.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0180098_16	1123263.AUKY01000068_gene489	190.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0180098_16	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0180098_16	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0180098_16	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0180098_16	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
KOfam	UHGV-0180098_18	K03651	42.1	0.0000000000092	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	N/A
eggNOG-mapper	UHGV-0180098_18	565653.EGBG_01980	60.8	0.00000192	Phage minor structural protein	N/A
Pfam	UHGV-0180098_18	PF00149	N/A	N/A	Calcineurin-like phosphoesterase	Metallophos
COG	UHGV-0180098_18	COG1409	N/A	N/A	3',5'-cyclic AMP phosphodiesterase CpdA	N/A
KOfam	UHGV-0180098_19	K07273	154.6	1.4013e-45	acm; lysozyme	N/A
PHROG	UHGV-0180098_19	phrog_291	110.2	2.2e-32	endolysin	lysis
UniRef90	UHGV-0180098_19	UniRef90_A0A564U0D3	402.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0180098_19	718252.FP2_04890	244.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0180098_19	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0180098_19	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0180098_19	PF01183,TIGR04053,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0180098_21	phrog_15303	80.8	1.3e-23	N/A	unknown function
UniRef90	UHGV-0180098_23	UniRef90_A0A7X2P872	66.2	0.0000000000324	Ribbon-helix-helix protein, CopG family	N/A
eggNOG-mapper	UHGV-0180098_23	1033733.CAEK01000007_gene1628	85.9	1.33e-19	N/A	N/A
Pfam	UHGV-0180098_23	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
structural_annotation	UHGV-0180098_23	PF16734,PF01402	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-0180098_24	cluster_11486	82.8	4.84e-23	NA	N/A
PHROG	UHGV-0180098_25	phrog_21718	40.1	0.000000000052	N/A	unknown function
PHROG	UHGV-0180098_28	phrog_16490	103.5	4.7e-38	N/A	unknown function
eggNOG-mapper	UHGV-0180098_28	1408437.JNJN01000043_gene803	158.0	1.68156e-44	N/A	N/A
eggNOG-mapper	UHGV-0180098_29	1408437.JNJN01000043_gene802	121.0	6.41e-34	N/A	N/A
eggNOG-mapper	UHGV-0180098_30	1408437.JNJN01000043_gene801	96.3	6.3e-22	N/A	N/A
KOfam	UHGV-0180098_31	K14059	185.8	0	int; integrase	N/A
PHROG	UHGV-0180098_31	phrog_1	166.9	0	integrase	integration and excision
UniRef90	UHGV-0180098_31	UniRef90_A0A367GI93	220.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0180098_31	1507.HMPREF0262_00307	160.0	6.93643e-43	Phage integrase family	N/A
Pfam	UHGV-0180098_31	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0180098_31	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0180098_31	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0180098_32	K07729	40.4	0.000000000037	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0180098_32	phrog_1373	43.0	0.0000000000061	transcriptional regulator	transcription regulation
UniRef90	UHGV-0180098_32	UniRef90_A0A2A7AM70	189.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0180098_32	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0180098_32	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0180098_32	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0180098_35	K02342	81.3	1.2e-23	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-0180098_35	phrog_192	93.6	1.9e-27	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0180098_35	UniRef90_UPI001EE95DBE	80.9	0.000000000000211	3'-5' exoribonuclease	N/A
eggNOG-mapper	UHGV-0180098_35	665956.HMPREF1032_02791	124.0	1.06e-28	N/A	N/A
PADLOC	UHGV-0180098_35	cd06127	74.9	2.2e-21	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-0180098_35	PF00929	N/A	N/A	Exonuclease	RNase_T
Pfam	UHGV-0180098_35	PF00533	N/A	N/A	BRCA1 C Terminus (BRCT) domain	BRCT
COG	UHGV-0180098_35	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A
structural_annotation	UHGV-0180098_35	PF13361,PF00533,MF_00157,NF008746,COG2925	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0180098_36	PF06776,COG5342	N/A	N/A	N/A	N/A
KOfam	UHGV-0180098_37	K22300	54.1	0.0000000000000035	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0180098_37	phrog_8	40.3	0.000000000064	transcriptional regulator	transcription regulation
UniRef90	UHGV-0180098_37	UniRef90_A0A3D4L0P7	55.1	0.00000018	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0180098_37	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0180098_37	COG3780	N/A	N/A	DNA endonuclease related to intein-encoded endonucleases	N/A
structural_annotation	UHGV-0180098_37	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0180098_38	PF21291,TIGR03070,COG1476	N/A	N/A	N/A	N/A