UHGV-0180669 (vOTU-075287)

Viral Genome: UHGV-0180669

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0180669
vOTU ID	vOTU-075287
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_583736
Associated BioSample	SAMN09781759
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.03 (High-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9787
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.06
Jumbo phage	No

Genome content
Genome length (bp)	34,088
GC content	57.95%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	50
CDS density	94%
Average CDS length (bps)	643.56
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 97.03)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0180669_1	K03497	51.3	0.0000000000000044	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0180669_1	phrog_21498	276.0	0	N/A	unknown function
UniRef90	UHGV-0180669_1	UniRef90_A0A7X2P836	289.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0180669_1	469378.Ccur_02830	268.0	0	DNA binding	N/A
PADLOC	UHGV-0180669_1	MTase_II_00015	79.6	5.4e-23	Type II methyltransferase	RM
Pfam	UHGV-0180669_1	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0180669_1	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0180669_1	PF02195,PF05869,MF_02015,TIGR00180,TIGR01712,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0180669_2	phrog_5110	56.7	2.3e-16	terminase small subunit	head and packaging
UniRef90	UHGV-0180669_2	UniRef90_UPI00195E8788	117.0	1.72e-30	P27 family phage terminase small subunit	N/A
structural_annotation	UHGV-0180669_2	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0180669_3	phrog_9	242.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0180669_3	UniRef90_A0A6I7GGF0	919.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0180669_3	1235792.C808_00083	609.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0180669_3	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0180669_3	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0180669_3	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0180669_3	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0180669_4	phrog_12	115.0	1.6e-34	portal protein	head and packaging
UniRef90	UHGV-0180669_4	UniRef90_G9YSB8	505.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-0180669_4	610130.Closa_0742	300.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0180669_4	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0180669_4	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0180669_4	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0180669_4	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0180669_5	K01358	136.6	2.4e-40	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0180669_5	phrog_94	248.9	0	head maturation protease	head and packaging
UniRef90	UHGV-0180669_5	UniRef90_A0A1Y4BT12	348.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0180669_5	349161.Dred_2605	310.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0180669_5	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0180669_5	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0180669_5	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0180669_6	phrog_10	141.6	8.09951e-42	major head protein	head and packaging
UniRef90	UHGV-0180669_6	UniRef90_G9YSC0	683.0	0	Cadherin-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0180669_6	1235792.C808_00086	415.0	0	Phage capsid family	N/A
Pfam	UHGV-0180669_6	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0180669_6	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0180669_6	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0180669_6	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0180669_6	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0180669_7	phrog_749	63.3	3.6e-18	N/A	unknown function
eggNOG-mapper	UHGV-0180669_7	86416.Clopa_0342	61.2	0.0000000000749	N/A	N/A
PHROG	UHGV-0180669_8	phrog_19734	110.9	6.6e-33	N/A	unknown function
UniRef90	UHGV-0180669_8	UniRef90_A0A6I7GNS7	125.0	4.8e-34	Phage head closure protein	N/A
eggNOG-mapper	UHGV-0180669_8	349161.Dred_2602	78.6	1.06e-16	N/A	N/A
eggNOG-mapper	UHGV-0180669_9	999413.HMPREF1094_02005	86.3	2.43e-20	N/A	N/A
structural_annotation	UHGV-0180669_9	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0180669_10	phrog_5	48.3	0.00000000000023	tail completion or Neck1 protein	connector
UniRef90	UHGV-0180669_10	UniRef90_R6UNR2	142.0	3.3e-40	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0180669_10	908340.HMPREF9406_2573	142.0	5.54003e-41	N/A	N/A
structural_annotation	UHGV-0180669_10	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0180669_11	phrog_88	86.6	3.2e-25	major tail protein	tail
UniRef90	UHGV-0180669_11	UniRef90_UPI0018771F27	121.0	4.02e-31	phage tail protein	N/A
eggNOG-mapper	UHGV-0180669_11	33035.JPJF01000039_gene278	69.7	0.00000000000569	N/A	N/A
NCBIFam	UHGV-0180669_11	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0180669_11	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0180669_14	phrog_6900	238.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0180669_14	UniRef90_A0A373CK98	255.0	0	PblA (Fragment)	N/A
eggNOG-mapper	UHGV-0180669_14	573061.Clocel_3967	296.0	0	tape measure	N/A
COG	UHGV-0180669_14	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0180669_14	PF05537,MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-0180669_15	phrog_33	64.4	3e-18	distal tail protein Dit	tail
UniRef90	UHGV-0180669_15	UniRef90_A0A2X2UUQ3	162.0	1.4013e-45	Phage putative tail component	N/A
eggNOG-mapper	UHGV-0180669_15	536233.CLO_0897	84.7	4.3e-17	tail component	N/A
COG	UHGV-0180669_15	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0180669_15	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0180669_16	phrog_1067	323.8	0	minor head protein	head and packaging
UniRef90	UHGV-0180669_16	UniRef90_A0A1C6H6B4	496.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0180669_16	1123263.AUKY01000068_gene489	365.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0180669_16	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0180669_16	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0180669_16	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0180669_16	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
UniRef90	UHGV-0180669_17	UniRef90_A0A3A6E2U3	113.0	1.3e-26	N/A	N/A
PHROG	UHGV-0180669_21	phrog_240	48.3	0.00000000000012	head protein	head and packaging
COG	UHGV-0180669_21	COG3405	N/A	N/A	Endo-1,4-beta-D-glucanase Y	N/A
structural_annotation	UHGV-0180669_22	NF033746,COG3764	N/A	N/A	N/A	N/A
PHROG	UHGV-0180669_23	phrog_1863	70.2	1.6e-20	N/A	unknown function
eggNOG-mapper	UHGV-0180669_23	718252.FP2_04900	115.0	9.6e-33	N/A	N/A
PHROG	UHGV-0180669_24	phrog_1129	71.9	5.5e-21	holin	lysis
UniRef90	UHGV-0180669_24	UniRef90_A0A810PUU2	164.0	0	Holin	N/A
eggNOG-mapper	UHGV-0180669_24	1410668.JNKC01000001_gene1676	101.0	3.92e-27	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0180669_24	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0180669_24	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-0180669_25	K01448	58.9	8.4e-17	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0180669_25	phrog_435	91.5	1.2e-26	endolysin	lysis
UniRef90	UHGV-0180669_25	UniRef90_A0A3D5TEB1	303.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0180669_25	994573.T472_0210960	126.0	2.44e-33	n-acetylmuramoyl-l-alanine amidase	N/A
Pfam	UHGV-0180669_25	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0180669_25	PF05036	N/A	N/A	SPOR domain	SPOR
COG	UHGV-0180669_25	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0180669_25	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
KOfam	UHGV-0180669_26	K14059	221.4	0	int; integrase	N/A
PHROG	UHGV-0180669_26	phrog_1	223.6	0	integrase	integration and excision
UniRef90	UHGV-0180669_26	UniRef90_A0A1H8A220	287.0	0	Site-specific recombinase XerD	N/A
eggNOG-mapper	UHGV-0180669_26	1507.HMPREF0262_00307	182.0	0	Phage integrase family	N/A
Pfam	UHGV-0180669_26	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0180669_26	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0180669_26	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0180669_26	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0180669_27	phrog_22683	145.9	5.60519e-44	N/A	unknown function
UniRef90	UHGV-0180669_27	UniRef90_UPI00189C5C1D	145.0	9.66896e-44	N/A	N/A
eggNOG-mapper	UHGV-0180669_27	999425.HMPREF9186_01864	145.0	2.24208e-44	N/A	N/A
AcrCatalog	UHGV-0180669_27	cluster_3962	133.0	2.52234e-44	NA	N/A
Pfam	UHGV-0180669_27	PF13783	N/A	N/A	N/A	DUF4177
structural_annotation	UHGV-0180669_27	PF13783,NF008362,COG3499	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0180669_28	1262449.CP6013_2082	145.0	1.16028e-42	N/A	N/A
structural_annotation	UHGV-0180669_28	PF11631,TIGR03066	N/A	N/A	N/A	N/A
UniRef90	UHGV-0180669_29	UniRef90_A0A7X3ASF1	107.0	1.24e-27	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0180669_29	693746.OBV_19770	52.4	0.000000438	sequence-specific DNA binding	N/A
COG	UHGV-0180669_29	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0180669_29	PF13443,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0180669_30	K22300	57.8	2.4e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0180669_30	phrog_8	41.7	0.000000000025	transcriptional regulator	transcription regulation
UniRef90	UHGV-0180669_30	UniRef90_UPI001D013835	58.5	0.000000000897	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0180669_30	1280680.AUJU01000017_gene3835	58.9	0.00000000179	Helix-turn-helix domain	N/A
Pfam	UHGV-0180669_30	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0180669_30	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0180669_30	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0180669_32	PF12728,NF040990	N/A	N/A	N/A	N/A
PHROG	UHGV-0180669_33	phrog_6499	107.7	5.9e-32	transcriptional regulator	transcription regulation
UniRef90	UHGV-0180669_33	UniRef90_UPI001BB4836B	113.0	2.73e-29	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0180669_33	1203606.HMPREF1526_00992	110.0	1.11e-28	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0180669_33	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0180669_33	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-0180669_33	PF01381,MF_00535,NF040522,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0180669_34	PF21327	N/A	N/A	N/A	N/A
PHROG	UHGV-0180669_36	phrog_428	65.9	8.9e-19	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0180669_36	UniRef90_UPI0002DD08A7	156.0	1.27518e-43	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0180669_36	1226322.HMPREF1545_00094	171.0	0	DnaD domain protein	N/A
Pfam	UHGV-0180669_36	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0180669_36	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0180669_36	NF040939,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-0180669_37	K02314	279.0	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0180669_37	phrog_19	235.6	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0180669_37	UniRef90_UPI00195856D7	395.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0180669_37	693746.OBV_27440	266.0	0	DnaB-like helicase N terminal domain	N/A
Pfam	UHGV-0180669_37	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0180669_37	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0180669_37	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0180669_37	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
KOfam	UHGV-0180669_38	K03496	196.8	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0180669_38	phrog_164	146.4	1.90577e-43	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0180669_38	UniRef90_UPI000318E277	267.0	0	ParA family protein	N/A
eggNOG-mapper	UHGV-0180669_38	1226322.HMPREF1545_00097	264.0	0	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	N/A
Pfam	UHGV-0180669_38	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0180669_38	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0180669_38	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-0180669_39	K03497	87.7	1.6e-26	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0180669_39	phrog_27290	337.5	0	N/A	unknown function
UniRef90	UHGV-0180669_39	UniRef90_A0A3D4EJM0	313.0	0	Chromosome partitioning protein ParB	N/A
eggNOG-mapper	UHGV-0180669_39	742738.HMPREF9460_00856	261.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0180669_39	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0180669_39	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0180669_39	PF12961,PF02195,MF_02015,MF_00684,TIGR04285,NF003443,COG1475,COG3097	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0180669_41	665956.HMPREF1032_03087	60.5	0.000000000925	N/A	N/A
dbAPIS	UHGV-0180669_43	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0180669_43	PF14354,NF007260	N/A	N/A	N/A	N/A
PHROG	UHGV-0180669_44	phrog_599	44.4	0.0000000000035	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-0180669_44	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0180669_44	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
structural_annotation	UHGV-0180669_44	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-0180669_48	phrog_3584	74.2	1.8e-21	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0180669_48	693746.OBV_19950	124.0	1.06e-31	N/A	N/A
structural_annotation	UHGV-0180669_48	PF11726	N/A	N/A	N/A	N/A
UniRef90	UHGV-0180669_49	UniRef90_UPI001F232519	105.0	1.53e-28	cysteine-rich KTR domain-containing protein	N/A
eggNOG-mapper	UHGV-0180669_49	1226322.HMPREF1545_00110	97.8	2.81e-26	Cysteine-rich KTR	N/A
Pfam	UHGV-0180669_49	PF14205	N/A	N/A	Cysteine-rich KTR	Cys_rich_KTR
structural_annotation	UHGV-0180669_49	PF14205	N/A	N/A	N/A	N/A
PHROG	UHGV-0180669_50	phrog_119	74.2	1.6e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0180669_50	UniRef90_G9YSB5	144.0	2.64986e-42	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0180669_50	1235792.C808_00081	91.7	1.87e-22	HNH nucleases	N/A
Pfam	UHGV-0180669_50	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0180669_50	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A