UHGV-0180894 (vOTU-148022)

Viral Genome: UHGV-0180894

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0180894
vOTU ID	vOTU-148022
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_586189
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.32 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9825
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.56
Jumbo phage	No

Genome content
Genome length (bp)	37,768
GC content	53.95%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	73
CDS density	94%
Average CDS length (bps)	485.47
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 89.32)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0180894_1	phrog_3136	142.8	8.99634e-43	N/A	unknown function
UniRef90	UHGV-0180894_1	UniRef90_A0A329TS47	158.0	1.4013e-45	ASCH domain-containing protein	N/A
COG	UHGV-0180894_1	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0180894_1	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0180894_2	phrog_355	76.0	5.2e-22	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0180894_2	UniRef90_R5AT00	124.0	4.13e-35	Gp57	N/A
eggNOG-mapper	UHGV-0180894_2	573061.Clocel_3558	86.7	7.13e-21	N/A	N/A
Pfam	UHGV-0180894_2	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-0180894_2	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-0180894_2	PF14359,MF_03036,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0180894_3	phrog_38832	71.5	9.3e-21	N/A	unknown function
UniRef90	UHGV-0180894_3	UniRef90_A0A415TX35	56.2	0.00000102	BAH domain-containing protein	N/A
eggNOG-mapper	UHGV-0180894_3	665956.HMPREF1032_00143	67.8	0.00000000000857	N/A	N/A
PHROG	UHGV-0180894_4	phrog_2118	102.3	5.9e-30	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0180894_4	UniRef90_A0A417HX51	203.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0180894_4	1511.CLOST_1546	121.0	6.69e-34	HNH endonuclease	N/A
Pfam	UHGV-0180894_4	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0180894_4	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0180894_4	TIGR02646,COG1403	N/A	N/A	N/A	N/A
UniRef90	UHGV-0180894_7	UniRef90_A0A8D9PDK2	65.9	0.00000000000509	Zinc-ribbon containing domain	N/A
PHROG	UHGV-0180894_10	phrog_1770	56.8	4.7e-16	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0180894_10	536233.CLO_1822	155.0	0	N/A	N/A
structural_annotation	UHGV-0180894_10	PF02075,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
PHROG	UHGV-0180894_14	phrog_801	76.2	6.2e-22	endolysin; inhibits RNA polymerase	lysis
UniRef90	UHGV-0180894_14	UniRef90_A0A316M891	99.0	1.84e-24	N/A	N/A
eggNOG-mapper	UHGV-0180894_14	1366055.S5MLS6_9CAUD	65.1	0.0000000000292	Cytidine and deoxycytidylate deaminase zinc-binding region	N/A
Pfam	UHGV-0180894_14	PF18909	N/A	N/A	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
eggNOG-mapper	UHGV-0180894_15	742738.HMPREF9460_02503	92.0	4.81e-23	N/A	N/A
structural_annotation	UHGV-0180894_15	PF06530,MF_00674,TIGR01636,COG1342	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0180894_16	PF10922,MF_00839	N/A	N/A	N/A	N/A
KOfam	UHGV-0180894_17	K07474	109.5	6.1e-32	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0180894_17	phrog_51	115.7	3.4e-34	terminase small subunit	head and packaging
UniRef90	UHGV-0180894_17	UniRef90_A0A396NMY4	122.0	2.88e-33	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0180894_17	476272.RUMHYD_01754	107.0	3.84e-28	Terminase small subunit	N/A
Pfam	UHGV-0180894_17	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0180894_17	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0180894_17	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0180894_18	K06909	376.9	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0180894_18	phrog_3717	163.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0180894_18	UniRef90_A0A2U1BEH4	707.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0180894_18	1123511.KB905868_gene187	475.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0180894_18	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0180894_18	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0180894_18	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0180894_18	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0180894_18	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0180894_19	phrog_533	360.0	0	portal protein	head and packaging
UniRef90	UHGV-0180894_19	UniRef90_UPI0006C81717	702.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0180894_19	1226322.HMPREF1545_00044	612.0	0	N/A	N/A
Pfam	UHGV-0180894_19	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0180894_19	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0180894_21	phrog_581	292.5	0	minor head protein	head and packaging
UniRef90	UHGV-0180894_21	UniRef90_UPI001D080D49	481.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0180894_21	1226322.HMPREF1545_00046	371.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0180894_21	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0180894_21	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0180894_21	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0180894_23	phrog_2303	51.1	0.000000000000016	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0180894_23	1226322.HMPREF1545_00049	164.0	0	N/A	N/A
PHROG	UHGV-0180894_24	phrog_10	172.3	0	major head protein	head and packaging
UniRef90	UHGV-0180894_24	UniRef90_A0A2U1BEF2	507.0	0	HK97 family phage major capsid protein	N/A
eggNOG-mapper	UHGV-0180894_24	1226322.HMPREF1545_00050	482.0	0	Phage capsid family	N/A
Pfam	UHGV-0180894_24	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0180894_24	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0180894_24	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0180894_24	PF05065,PF13620,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0180894_25	phrog_541	103.1	1.8e-30	head-tail adaptor	connector
eggNOG-mapper	UHGV-0180894_25	642492.Clole_0822	67.0	0.0000000000029	N/A	N/A
PHROG	UHGV-0180894_26	phrog_3366	99.4	3.5e-29	N/A	unknown function
eggNOG-mapper	UHGV-0180894_26	1226322.HMPREF1545_00053	167.0	0	N/A	N/A
Pfam	UHGV-0180894_26	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0180894_26	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0180894_27	phrog_556	73.9	2.1e-21	minor head protein	head and packaging
UniRef90	UHGV-0180894_27	UniRef90_UPI00195E1497	213.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0180894_27	1226322.HMPREF1545_00054	167.0	0	Minor capsid protein	N/A
Pfam	UHGV-0180894_27	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0180894_27	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0180894_28	phrog_3266	48.5	0.00000000000013	tail completion	connector
eggNOG-mapper	UHGV-0180894_28	1232443.BAIA02000078_gene24	172.0	0	N/A	N/A
structural_annotation	UHGV-0180894_28	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0180894_29	phrog_3099	86.5	3.7e-25	N/A	unknown function
eggNOG-mapper	UHGV-0180894_29	693746.OBV_18150	228.0	0	N/A	N/A
structural_annotation	UHGV-0180894_29	TIGR02126	N/A	N/A	N/A	N/A
PHROG	UHGV-0180894_30	phrog_11299	67.4	2.7e-19	N/A	unknown function
eggNOG-mapper	UHGV-0180894_30	693746.OBV_18160	130.0	3.54e-37	N/A	N/A
structural_annotation	UHGV-0180894_30	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0180894_31	phrog_706	120.9	9.5e-36	N/A	unknown function
UniRef90	UHGV-0180894_31	UniRef90_A0A2U1BEN4	209.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0180894_31	693746.OBV_18170	197.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0180894_31	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0180894_31	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0180894_32	phrog_1535	115.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0180894_32	UniRef90_A0A810PX76	234.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0180894_32	1235797.C816_04182	365.0	0	SLT domain	N/A
COG	UHGV-0180894_32	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0180894_32	PF05546,TIGR02559	N/A	N/A	N/A	N/A
PHROG	UHGV-0180894_33	phrog_1194	70.4	2.5e-20	N/A	unknown function
eggNOG-mapper	UHGV-0180894_33	411902.CLOBOL_00125	119.0	4.79e-33	N/A	N/A
structural_annotation	UHGV-0180894_33	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0180894_34	phrog_13879	223.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0180894_34	693746.OBV_18210	391.0	0	N/A	N/A
structural_annotation	UHGV-0180894_34	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0180894_35	PF10651,NF038186	N/A	N/A	N/A	N/A
PHROG	UHGV-0180894_38	phrog_10898	286.7	0	N/A	unknown function
UniRef90	UHGV-0180894_38	UniRef90_A0A7U3NJT3	192.0	0	Putative Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0180894_38	717606.PaecuDRAFT_2136	72.0	0.0000000000101	S-layer homology domain	N/A
COG	UHGV-0180894_38	COG1520	N/A	N/A	Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat	N/A
structural_annotation	UHGV-0180894_38	PF19081,PF15418,MF_01905,NF032891,COG3291	N/A	N/A	N/A	N/A
PHROG	UHGV-0180894_39	phrog_10898	40.2	0.000000000058	N/A	unknown function
structural_annotation	UHGV-0180894_39	PF16408,NF033510	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0180894_40	1519439.JPJG01000060_gene1892	63.2	0.00000000202	Collagen triple helix repeat (20 copies)	N/A
COG	UHGV-0180894_40	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
UniRef90	UHGV-0180894_41	UniRef90_R5IRZ6	321.0	0	N/A	N/A
eggNOG-mapper	UHGV-0180894_41	1519439.JPJG01000060_gene1894	182.0	0	N/A	N/A
Pfam	UHGV-0180894_41	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-0180894_41	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-0180894_41	PF19789,PF13620,NF033708	N/A	N/A	N/A	N/A
PHROG	UHGV-0180894_42	phrog_18725	100.3	1.9e-29	N/A	unknown function
eggNOG-mapper	UHGV-0180894_42	693746.OBV_18220	129.0	3.57e-36	N/A	N/A
structural_annotation	UHGV-0180894_43	PF20055,MF_03008,NF010730,COG3940	N/A	N/A	N/A	N/A
Pfam	UHGV-0180894_44	PF07484	N/A	N/A	Phage Tail Collar Domain	Collar
structural_annotation	UHGV-0180894_44	PF07484	N/A	N/A	N/A	N/A
PHROG	UHGV-0180894_47	phrog_13256	61.8	7e-18	N/A	unknown function
eggNOG-mapper	UHGV-0180894_47	1226322.HMPREF1545_00166	68.6	0.0000000000000279	N/A	N/A
UniRef90	UHGV-0180894_48	UniRef90_A0A358M2Y7	221.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0180894_48	525254.HMPREF0072_1273	207.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
COG	UHGV-0180894_48	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0180894_48	NF033743	N/A	N/A	N/A	N/A
UniRef90	UHGV-0180894_49	UniRef90_A0A1C6JAI6	68.2	0.000000000000251	RNA polymerase sigma factor, sigma-70 family	N/A
structural_annotation	UHGV-0180894_49	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0180894_50	phrog_3754	91.7	8.6e-27	N/A	unknown function
eggNOG-mapper	UHGV-0180894_50	476272.RUMHYD_01764	156.0	0	N/A	N/A
PHROG	UHGV-0180894_51	phrog_21718	86.4	2.2e-25	N/A	unknown function
eggNOG-mapper	UHGV-0180894_51	397290.C810_05210	59.7	0.00000000648	N/A	N/A
PHROG	UHGV-0180894_52	phrog_22984	73.3	8.6e-22	N/A	unknown function
PHROG	UHGV-0180894_53	phrog_16490	162.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0180894_53	1408437.JNJN01000043_gene803	135.0	3.64e-36	N/A	N/A
PHROG	UHGV-0180894_54	phrog_20016	193.4	0	N/A	unknown function
UniRef90	UHGV-0180894_54	UniRef90_A0A285PT46	191.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0180894_54	1226322.HMPREF1545_00077	169.0	0	N/A	N/A
structural_annotation	UHGV-0180894_54	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0180894_55	PF12510	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0180894_56	1226322.HMPREF1545_00079	109.0	1.97e-29	N/A	N/A
KOfam	UHGV-0180894_57	K14059	129.3	5.3e-38	int; integrase	N/A
PHROG	UHGV-0180894_57	phrog_1	142.2	4.49957e-42	integrase	integration and excision
UniRef90	UHGV-0180894_57	UniRef90_UPI00195CC1EE	381.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0180894_57	1235835.C814_03141	200.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0180894_57	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0180894_57	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0180894_57	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
Pfam	UHGV-0180894_58	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0180894_58	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0180894_58	PF12844	N/A	N/A	N/A	N/A
PHROG	UHGV-0180894_60	phrog_5319	55.3	7.1e-16	outer membrane protein	other
eggNOG-mapper	UHGV-0180894_60	1158601.I585_00731	70.5	0.0000000000065	N/A	N/A
Pfam	UHGV-0180894_60	PF12773	N/A	N/A	Double zinc ribbon	DZR
structural_annotation	UHGV-0180894_60	PF03843,MF_01959,TIGR00752,NF041910,COG3390	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0180894_64	476272.RUMHYD_03309	51.2	0.000000919	N/A	N/A
structural_annotation	UHGV-0180894_64	PF13601,MF_01819,NF008565,COG1846	N/A	N/A	N/A	N/A
PHROG	UHGV-0180894_65	phrog_8	45.9	0.0000000000013	transcriptional regulator	transcription regulation
UniRef90	UHGV-0180894_65	UniRef90_UPI001E54DE4F	89.0	8.13e-21	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0180894_65	1378168.N510_01712	67.0	0.00000000000786	N/A	N/A
Pfam	UHGV-0180894_65	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0180894_65	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0180894_66	UniRef90_A0A1C7FQD9	88.2	1.63e-21	Transcriptional regulator	N/A
Pfam	UHGV-0180894_66	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0180894_66	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0180894_67	UniRef90_UPI000F0633F9	65.1	0.00000000000161	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0180894_67	1235835.C814_03153	77.0	6.12e-18	N/A	N/A
structural_annotation	UHGV-0180894_67	PF09035,NF040990	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0180894_68	760568.Desku_0919	115.0	2.48e-29	N/A	N/A
structural_annotation	UHGV-0180894_68	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0180894_69	NF041247	N/A	N/A	N/A	N/A
PHROG	UHGV-0180894_73	phrog_4433	176.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0180894_73	106648.BBLJ01000054_gene3814	97.4	7.31e-24	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0180894_73	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A