UHGV-0180896 (vOTU-072589)

Viral Genome: UHGV-0180896

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0180896
vOTU ID	vOTU-072589
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_586183
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.63 (High-quality)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9789
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.97
Jumbo phage	No

Genome content
Genome length (bp)	40,639
GC content	52.65%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	66
CDS density	92%
Average CDS length (bps)	568.14
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.63)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0180896_1	phrog_8680	175.4	0	N/A	unknown function
UniRef90	UHGV-0180896_1	UniRef90_A0A844D688	327.0	0	N/A	N/A
eggNOG-mapper	UHGV-0180896_1	1423790.BN53_04265	158.0	4.2039e-45	Belongs to the N(4) N(6)-methyltransferase family	N/A
Pfam	UHGV-0180896_1	PF14386	N/A	N/A	N/A	DUF4417
COG	UHGV-0180896_1	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0180896_7	PF04545	N/A	N/A	N/A	N/A
KOfam	UHGV-0180896_8	K03497	86.9	4.1e-25	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0180896_8	phrog_4715	114.3	1.2e-33	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0180896_8	UniRef90_A0A2A7B6Q0	369.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0180896_8	411471.SUBVAR_05842	183.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0180896_8	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0180896_8	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0180896_8	PF02195,MF_02015,TIGR03764,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-0180896_9	K03496	206.2	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0180896_9	phrog_164	153.2	1.4013e-45	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0180896_9	UniRef90_A0A2A7B6H3	355.0	0	AAA_31 domain-containing protein	N/A
eggNOG-mapper	UHGV-0180896_9	411471.SUBVAR_05839	228.0	0	AAA domain	N/A
Pfam	UHGV-0180896_9	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0180896_9	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0180896_9	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
PHROG	UHGV-0180896_11	phrog_6969	51.6	0.000000000000011	N/A	unknown function
eggNOG-mapper	UHGV-0180896_11	748224.HMPREF9436_00735	157.0	2.25609e-43	N/A	N/A
Pfam	UHGV-0180896_11	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
Pfam	UHGV-0180896_11	PF19481	N/A	N/A	N/A	DUF6017
COG	UHGV-0180896_11	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0180896_11	PF19481,PF01978,MF_01819,TIGR01610,COG5625	N/A	N/A	N/A	N/A
KOfam	UHGV-0180896_12	K03111	147.5	1.4013e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0180896_12	phrog_44	150.9	7.00649e-45	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0180896_12	UniRef90_D4K451	220.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0180896_12	718252.FP2_06770	220.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0180896_12	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0180896_12	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0180896_12	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0180896_12	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0180896_12	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0180896_13	phrog_7566	86.7	1.9e-25	N/A	unknown function
eggNOG-mapper	UHGV-0180896_13	411471.SUBVAR_05830	107.0	7.87e-29	N/A	N/A
PHROG	UHGV-0180896_15	phrog_72	46.9	0.00000000000054	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0180896_15	1118057.CAGX01000020_gene1649	69.7	0.00000000000197	N/A	N/A
structural_annotation	UHGV-0180896_15	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0180896_16	phrog_14970	48.5	0.00000000000019	N/A	unknown function
COG	UHGV-0180896_16	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0180896_16	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0180896_19	PF10346,MF_00337,NF010671	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0180896_26	PF21291,TIGR03070,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0180896_27	phrog_8	47.3	0.00000000000052	transcriptional regulator	transcription regulation
UniRef90	UHGV-0180896_27	UniRef90_A0A2A7AM72	137.0	7.24e-40	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0180896_27	1378168.N510_01712	73.2	0.0000000000000386	N/A	N/A
Pfam	UHGV-0180896_27	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0180896_27	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0180896_28	PF21441,TIGR04176,COG1846	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0180896_31	394503.Ccel_2974	60.5	0.000000317	N/A	N/A
structural_annotation	UHGV-0180896_31	COG5342	N/A	N/A	N/A	N/A
KOfam	UHGV-0180896_34	K07729	40.2	0.000000000036	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0180896_34	phrog_1373	43.0	0.0000000000066	transcriptional regulator	transcription regulation
UniRef90	UHGV-0180896_34	UniRef90_A0A2A7AM70	189.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0180896_34	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0180896_34	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0180896_34	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0180896_35	K14059	184.1	0	int; integrase	N/A
PHROG	UHGV-0180896_35	phrog_1	165.3	0	integrase	integration and excision
UniRef90	UHGV-0180896_35	UniRef90_A0A367GI93	221.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0180896_35	1507.HMPREF0262_00307	162.0	1.30321e-43	Phage integrase family	N/A
Pfam	UHGV-0180896_35	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0180896_35	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0180896_35	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0180896_36	1408437.JNJN01000043_gene801	95.9	8.84e-22	N/A	N/A
eggNOG-mapper	UHGV-0180896_37	1408437.JNJN01000043_gene802	122.0	3.18e-34	N/A	N/A
PHROG	UHGV-0180896_38	phrog_16490	102.5	1.2e-39	N/A	unknown function
eggNOG-mapper	UHGV-0180896_38	1408437.JNJN01000043_gene803	162.0	0	N/A	N/A
KOfam	UHGV-0180896_43	K23779	43.3	0.0000000000077	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
Pfam	UHGV-0180896_43	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0180896_43	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0180896_43	PF01381,TIGR03070,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0180896_45	PF07374,MF_00245,NF001072,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0180896_47	phrog_15303	83.1	2.8e-24	N/A	unknown function
PHROG	UHGV-0180896_48	phrog_1863	69.9	2.3e-20	N/A	unknown function
eggNOG-mapper	UHGV-0180896_48	718252.FP2_04900	144.0	3.64338e-44	N/A	N/A
KOfam	UHGV-0180896_49	K07273	154.0	1.4013e-45	acm; lysozyme	N/A
PHROG	UHGV-0180896_49	phrog_291	109.7	3.2e-32	endolysin	lysis
UniRef90	UHGV-0180896_49	UniRef90_A0A564U0D3	416.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0180896_49	718252.FP2_04890	247.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0180896_49	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0180896_49	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0180896_49	PF01183,TIGR04053,COG3757	N/A	N/A	N/A	N/A
KOfam	UHGV-0180896_50	K10804	48.4	0.00000000000012	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	N/A
UniRef90	UHGV-0180896_50	UniRef90_UPI001C232BF4	98.2	7.45e-18	SGNH/GDSL hydrolase family protein	N/A
eggNOG-mapper	UHGV-0180896_50	880070.Cycma_1221	174.0	0	lipolytic protein G-D-S-L family	N/A
Pfam	UHGV-0180896_50	PF13472	N/A	N/A	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
COG	UHGV-0180896_50	COG2755	N/A	N/A	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	N/A
PHROG	UHGV-0180896_52	phrog_1067	176.0	0	minor head protein	head and packaging
UniRef90	UHGV-0180896_52	UniRef90_A0A2A7AM44	705.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0180896_52	1123263.AUKY01000068_gene489	190.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0180896_52	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0180896_52	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0180896_52	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0180896_52	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0180896_53	phrog_33	72.3	1.1e-20	distal tail protein Dit	tail
UniRef90	UHGV-0180896_53	UniRef90_A0A173Z1X4	137.0	1.7e-36	Phage-related protein	N/A
eggNOG-mapper	UHGV-0180896_53	1487921.DP68_11370	92.4	6.81e-20	tail component	N/A
COG	UHGV-0180896_53	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0180896_53	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0180896_54	phrog_9959	86.6	4.9e-26	tail length tape measure protein	tail
UniRef90	UHGV-0180896_54	UniRef90_A0A2A7ALS3	854.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0180896_54	596328.HMPREF0578_1241	164.0	1.75e-38	phage tail tape measure protein	N/A
Pfam	UHGV-0180896_54	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0180896_54	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0180896_54	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0180896_54	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0180896_57	phrog_88	92.7	4.3e-27	major tail protein	tail
UniRef90	UHGV-0180896_57	UniRef90_G9YSC5	107.0	1.26e-25	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0180896_57	33035.JPJF01000039_gene278	73.9	0.000000000000144	N/A	N/A
NCBIFam	UHGV-0180896_57	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0180896_57	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0180896_58	phrog_5	45.9	0.00000000000055	tail completion or Neck1 protein	connector
UniRef90	UHGV-0180896_58	UniRef90_A0A1C6FG30	115.0	1.37e-29	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0180896_58	908340.HMPREF9406_2573	110.0	2.49e-28	N/A	N/A
structural_annotation	UHGV-0180896_58	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0180896_59	999413.HMPREF1094_02005	67.0	0.000000000000568	N/A	N/A
structural_annotation	UHGV-0180896_59	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0180896_60	phrog_19734	93.3	2.4e-27	N/A	unknown function
UniRef90	UHGV-0180896_60	UniRef90_A0A0D8I708	80.1	9.41e-17	Phage head-tail joining protein	N/A
eggNOG-mapper	UHGV-0180896_60	349161.Dred_2602	74.3	0.00000000000000275	N/A	N/A
structural_annotation	UHGV-0180896_60	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0180896_61	phrog_749	59.3	6.7e-17	N/A	unknown function
eggNOG-mapper	UHGV-0180896_61	1211817.CCAT010000053_gene2133	66.6	0.000000000000698	N/A	N/A
PHROG	UHGV-0180896_62	phrog_10	127.1	1.3e-37	major head protein	head and packaging
UniRef90	UHGV-0180896_62	UniRef90_A0A2A7B712	722.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0180896_62	1235792.C808_00086	436.0	0	Phage capsid family	N/A
Pfam	UHGV-0180896_62	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0180896_62	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0180896_62	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0180896_62	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0180896_62	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0180896_63	K01358	74.5	2e-21	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0180896_63	phrog_94	125.0	9.3e-37	head maturation protease	head and packaging
UniRef90	UHGV-0180896_63	UniRef90_UPI001C0ECD60	134.0	5.58e-35	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0180896_63	1232452.BAIB02000007_gene1626	127.0	4.84e-33	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0180896_63	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0180896_63	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0180896_63	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0180896_64	phrog_12	128.9	4e-38	portal protein	head and packaging
UniRef90	UHGV-0180896_64	UniRef90_A0A2A7B6S8	557.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0180896_64	349161.Dred_2606	262.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0180896_64	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0180896_64	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0180896_64	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0180896_64	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0180896_65	phrog_9	241.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0180896_65	UniRef90_A0A2A7ALT4	1058.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0180896_65	610130.Closa_0741	632.0	0	Phage Terminase	N/A
Pfam	UHGV-0180896_65	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0180896_65	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0180896_65	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0180896_66	phrog_13845	56.2	4.9e-16	N/A	unknown function
eggNOG-mapper	UHGV-0180896_66	1399942.U3PDR2_9CAUD	66.6	0.0000000000016	N/A	N/A
structural_annotation	UHGV-0180896_66	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A