UHGV-0180931 (vOTU-029193)

Viral Genome: UHGV-0180931

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0180931
vOTU ID	vOTU-029193
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_571851
Associated BioSample	SAMN06348197
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.8 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9812
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.39
Jumbo phage	No

Genome content
Genome length (bp)	30,003
GC content	59.33%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	44
CDS density	93%
Average CDS length (bps)	632.66
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 70.8)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0180931_2	phrog_33	42.2	0.000000000016	distal tail protein Dit	tail
UniRef90	UHGV-0180931_2	UniRef90_A0A417QGC1	122.0	1.91e-30	MtfA protein	N/A
eggNOG-mapper	UHGV-0180931_2	1235792.C808_00094	112.0	4.27e-27	phage tail	N/A
COG	UHGV-0180931_2	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0180931_2	PF05709,PF02408,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0180931_3	phrog_3558	219.7	0	tail protein	tail
UniRef90	UHGV-0180931_3	UniRef90_UPI001C01D15B	160.0	2.04e-38	phage tail protein	N/A
eggNOG-mapper	UHGV-0180931_3	1235799.C818_04233	102.0	1.67e-20	Prophage endopeptidase tail	N/A
Pfam	UHGV-0180931_3	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-0180931_3	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0180931_3	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0180931_4	657322.FPR_13530	67.4	0.00000000216	domain, Protein	N/A
COG	UHGV-0180931_4	COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-0180931_5	phrog_2310	59.3	4e-17	N/A	unknown function
KOfam	UHGV-0180931_6	K08640	101.3	1.7e-29	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-0180931_6	phrog_894	109.5	3.9e-32	endolysin	lysis
UniRef90	UHGV-0180931_6	UniRef90_A0A1C5NY12	232.0	0	Zinc D-Ala-D-Ala carboxypeptidase	N/A
eggNOG-mapper	UHGV-0180931_6	748224.HMPREF9436_03320	228.0	0	Peptidase M15	N/A
Pfam	UHGV-0180931_6	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-0180931_6	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0180931_6	PF05951,COG3108	N/A	N/A	N/A	N/A
PHROG	UHGV-0180931_7	phrog_199	91.2	1.2e-26	holin	lysis
UniRef90	UHGV-0180931_7	UniRef90_A0A2A6Z8T2	249.0	0	Holin	N/A
eggNOG-mapper	UHGV-0180931_7	742740.HMPREF9474_02333	189.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0180931_7	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0180931_7	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0180931_7	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0180931_7	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0180931_8	phrog_13712	80.4	2.4e-23	holin	lysis
eggNOG-mapper	UHGV-0180931_8	397291.C804_01108	77.0	2.61e-16	N/A	N/A
structural_annotation	UHGV-0180931_8	PF09682,TIGR01673	N/A	N/A	N/A	N/A
KOfam	UHGV-0180931_9	K07699	51.0	0.00000000000002	spo0A; two-component system, response regulator, stage 0 sporulation protein A	N/A
PHROG	UHGV-0180931_9	phrog_24603	42.0	0.000000000016	N/A	unknown function
UniRef90	UHGV-0180931_9	UniRef90_A0A291T8I8	154.0	1.4013e-45	Spo0A_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0180931_9	1226322.HMPREF1545_01110	70.1	0.000000000000134	Sporulation initiation factor Spo0A C terminal	N/A
Pfam	UHGV-0180931_9	PF08769	N/A	N/A	Sporulation initiation factor Spo0A C terminal	Spo0A_C
COG	UHGV-0180931_9	COG2197	N/A	N/A	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	N/A
structural_annotation	UHGV-0180931_9	PF08769,TIGR02875	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0180931_11	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0180931_12	phrog_20016	207.8	0	N/A	unknown function
UniRef90	UHGV-0180931_12	UniRef90_A0A285PT46	216.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0180931_12	1226322.HMPREF1545_00077	186.0	0	N/A	N/A
structural_annotation	UHGV-0180931_12	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0180931_13	phrog_16490	150.0	1.26117e-44	N/A	unknown function
eggNOG-mapper	UHGV-0180931_13	1408437.JNJN01000043_gene803	141.0	2.38e-38	N/A	N/A
PHROG	UHGV-0180931_14	phrog_22984	74.0	1.1e-21	N/A	unknown function
PHROG	UHGV-0180931_15	phrog_21718	122.7	2.6e-36	N/A	unknown function
eggNOG-mapper	UHGV-0180931_15	397290.C810_05210	98.6	5.95e-24	N/A	N/A
PHROG	UHGV-0180931_16	phrog_3754	97.2	1.8e-28	N/A	unknown function
eggNOG-mapper	UHGV-0180931_16	1235790.C805_00054	107.0	3.01e-28	N/A	N/A
UniRef90	UHGV-0180931_17	UniRef90_UPI000C7592F8	64.7	0.00000000000175	ribbon-helix-helix protein, CopG family	N/A
eggNOG-mapper	UHGV-0180931_17	663952.SDD27957_09060	57.8	0.000000000116	N/A	N/A
Pfam	UHGV-0180931_17	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
structural_annotation	UHGV-0180931_17	PF01402,NF041793,COG3905	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0180931_18	PF07342	N/A	N/A	N/A	N/A
KOfam	UHGV-0180931_19	K07741	44.5	0.0000000000047	antB; anti-repressor protein	N/A
PHROG	UHGV-0180931_19	phrog_63	130.2	1.9e-38	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0180931_19	UniRef90_R5FKX4	199.0	0	Antirepressor	N/A
eggNOG-mapper	UHGV-0180931_19	947981.E9LUT0_9CAUD	145.0	6.51e-40	DNA binding	N/A
Pfam	UHGV-0180931_19	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
Pfam	UHGV-0180931_19	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
NCBIFam	UHGV-0180931_19	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
structural_annotation	UHGV-0180931_19	PF09669,PF03374,TIGR02681,COG3646,COG3645	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0180931_20	PF04545,MF_00245,NF001074,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-0180931_23	K16617	54.0	0.0000000000000013	COL13A; collagen type XIII alpha	N/A
PHROG	UHGV-0180931_23	phrog_366	59.1	7.7e-17	tail fiber protein	tail
UniRef90	UHGV-0180931_23	UniRef90_UPI0018835F0C	282.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-0180931_23	411483.FAEPRAA2165_00757	158.0	3.01999e-40	N/A	N/A
Pfam	UHGV-0180931_23	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
PHROG	UHGV-0180931_24	phrog_1382	45.7	0.00000000000074	N/A	unknown function
UniRef90	UHGV-0180931_24	UniRef90_A0A6N9P4T5	47.0	0.00000328	ASCH domain-containing protein	N/A
NCBIFam	UHGV-0180931_24	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-0180931_24	NF040910	N/A	N/A	N/A	N/A
PHROG	UHGV-0180931_25	phrog_9534	257.7	0	head protein	head and packaging
eggNOG-mapper	UHGV-0180931_25	748224.HMPREF9436_00702	301.0	0	COG NOG18825 non supervised orthologous group	N/A
structural_annotation	UHGV-0180931_25	PF21567	N/A	N/A	N/A	N/A
PHROG	UHGV-0180931_26	phrog_538	145.6	3.09687e-43	minor tail protein	tail
UniRef90	UHGV-0180931_26	UniRef90_UPI001C0C4E4F	68.6	0.00000000324	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0180931_26	748224.HMPREF9436_03324	163.0	1.12104e-44	N/A	N/A
Pfam	UHGV-0180931_26	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0180931_26	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0180931_27	phrog_33	59.2	1.1e-16	distal tail protein Dit	tail
UniRef90	UHGV-0180931_27	UniRef90_A0A564T4N7	382.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0180931_27	748224.HMPREF9436_00700	429.0	0	Phage tail protein	N/A
structural_annotation	UHGV-0180931_27	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0180931_28	phrog_28775	291.4	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0180931_28	748224.HMPREF9436_00699	1099.0	0	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-0180931_28	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0180931_29	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-0180931_30	phrog_1526	73.8	2.1e-21	N/A	unknown function
UniRef90	UHGV-0180931_30	UniRef90_F3MWB0	60.1	0.0000000006	N/A	N/A
eggNOG-mapper	UHGV-0180931_30	875454.BAEW01000017_gene1589	64.7	0.00000000000166	N/A	N/A
PHROG	UHGV-0180931_31	phrog_117	181.2	0	major tail protein	tail
UniRef90	UHGV-0180931_31	UniRef90_E2ZGB2	296.0	0	Prophage LambdaSa1, structural protein	N/A
eggNOG-mapper	UHGV-0180931_31	748224.HMPREF9436_00696	296.0	0	domain, Protein	N/A
COG	UHGV-0180931_31	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0180931_31	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0180931_32	phrog_123	63.5	4.1e-18	tail terminator	connector
eggNOG-mapper	UHGV-0180931_32	748224.HMPREF9436_00695	112.0	1.19e-30	N/A	N/A
structural_annotation	UHGV-0180931_32	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-0180931_33	phrog_387	73.8	1.6e-21	neck protein	connector
UniRef90	UHGV-0180931_33	UniRef90_A0A4U9XLC1	64.7	0.000000000013	N/A	N/A
eggNOG-mapper	UHGV-0180931_33	748224.HMPREF9436_00694	168.0	0	N/A	N/A
PHROG	UHGV-0180931_34	phrog_501	82.4	5.4e-24	head closure Hc1	connector
UniRef90	UHGV-0180931_34	UniRef90_A0A139QHM6	117.0	4.77e-32	Phage-associated protein	N/A
eggNOG-mapper	UHGV-0180931_34	748224.HMPREF9436_00693	139.0	3.12994e-41	N/A	N/A
structural_annotation	UHGV-0180931_34	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0180931_35	phrog_137	108.7	3.4e-32	head-tail adaptor Ad1	connector
UniRef90	UHGV-0180931_35	UniRef90_A0A564SC88	208.0	0	Phage protein Gp19/Gp15/Gp42	N/A
eggNOG-mapper	UHGV-0180931_35	768726.HMPREF9178_1061	156.0	0	Phage protein Gp19/Gp15/Gp42	N/A
Pfam	UHGV-0180931_35	PF09355	N/A	N/A	N/A	Phage_Gp19
structural_annotation	UHGV-0180931_35	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-0180931_37	phrog_32396	129.5	1e-38	N/A	unknown function
UniRef90	UHGV-0180931_37	UniRef90_A0A564SB39	540.0	0	Phage capsid family protein	N/A
eggNOG-mapper	UHGV-0180931_37	1321784.HMPREF1987_01073	370.0	0	Phage capsid family	N/A
Pfam	UHGV-0180931_37	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0180931_37	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0180931_37	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0180931_38	phrog_233	85.2	8.9e-25	head scaffolding protein	head and packaging
UniRef90	UHGV-0180931_38	UniRef90_A0A2S0L5H5	91.3	7.9e-21	Phage scaffold protein	N/A
eggNOG-mapper	UHGV-0180931_38	706433.HMPREF9430_01266	85.5	2.67e-19	N/A	N/A
structural_annotation	UHGV-0180931_38	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0180931_39	phrog_17688	324.1	0	N/A	unknown function
UniRef90	UHGV-0180931_39	UniRef90_A0A564SCG0	797.0	0	Phage Terminase	N/A
eggNOG-mapper	UHGV-0180931_39	936375.HMPREF1152_0677	634.0	0	phage terminase, large subunit	N/A
COG	UHGV-0180931_39	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0180931_39	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
KOfam	UHGV-0180931_41	K11044	53.0	4.3e-16	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	N/A
PHROG	UHGV-0180931_41	phrog_2494	279.6	0	minor head protein	head and packaging
UniRef90	UHGV-0180931_41	UniRef90_UPI001F3BD4CE	224.0	0	polymorphic toxin type 50 domain-containing protein	N/A
eggNOG-mapper	UHGV-0180931_41	1280698.AUJS01000007_gene1034	220.0	0	cell adhesion	N/A
Pfam	UHGV-0180931_41	PF03496	N/A	N/A	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
COG	UHGV-0180931_41	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0180931_41	PF03496	N/A	N/A	N/A	N/A
PHROG	UHGV-0180931_42	phrog_104	285.5	0	portal protein	head and packaging
UniRef90	UHGV-0180931_42	UniRef90_A0A564SBV0	691.0	0	Phage portal protein, SPP1 Gp6-like	N/A
eggNOG-mapper	UHGV-0180931_42	665950.HMPREF1025_02537	562.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0180931_42	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0180931_42	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0180931_43	phrog_338	99.9	3.4e-29	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0180931_43	UniRef90_A0A564SBG0	189.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0180931_43	1280698.AUJS01000007_gene1032	169.0	0	HNH endonuclease domain protein	N/A
Pfam	UHGV-0180931_43	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0180931_43	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0180931_43	PF01844,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0180931_44	phrog_36	45.4	0.0000000000015	transcriptional regulator	transcription regulation
UniRef90	UHGV-0180931_44	UniRef90_A0A3E2U224	94.4	3.25e-22	Sigma70_r4_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0180931_44	748224.HMPREF9436_01463	189.0	0	N/A	N/A
structural_annotation	UHGV-0180931_44	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A