UHGV-0181437 (vOTU-016261)

Viral Genome: UHGV-0181437

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0181437
vOTU ID	vOTU-016261
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMEA1906556_a1_ct75109_vs1@Myoviridae__sp._ctRER1
Associated BioSample	SAMEA1906556
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.41 (Medium-quality)
Trimmed provirus	Yes
CheckV viral markers	8
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9569
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	10
Jumbo phage	No

Genome content
Genome length (bp)	27,515
GC content	43.19%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	33
CDS density	94%
Average CDS length (bps)	785.09
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 66.41)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0181437_2	phrog_21397	40.1	0.000000000042	N/A	unknown function
UniRef90	UHGV-0181437_2	UniRef90_R5DCX9	127.0	1.53e-29	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0181437_2	1410650.JHWL01000003_gene2815	130.0	3.47e-31	N/A	N/A
PHROG	UHGV-0181437_4	phrog_372	208.8	0	tail protein	tail
UniRef90	UHGV-0181437_4	UniRef90_UPI0013F5D6AA	112.0	7.27e-22	N/A	N/A
eggNOG-mapper	UHGV-0181437_4	552396.HMPREF0863_01449	117.0	2.37e-24	N/A	N/A
Pfam	UHGV-0181437_4	PF05895	N/A	N/A	N/A	DUF859
Pfam	UHGV-0181437_4	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-0181437_4	PF05895,MF_04116,MF_00791,NF010681,COG3291,COG5608	N/A	N/A	N/A	N/A
PHROG	UHGV-0181437_6	phrog_511	213.6	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0181437_6	1410650.JHWL01000003_gene2827	386.0	0	N/A	N/A
structural_annotation	UHGV-0181437_6	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0181437_7	phrog_12105	131.7	2.9e-39	N/A	unknown function
eggNOG-mapper	UHGV-0181437_7	1519439.JPJG01000060_gene1891	73.2	0.00000000000000646	N/A	N/A
PHROG	UHGV-0181437_8	phrog_15239	41.3	0.000000000023	N/A	unknown function
PHROG	UHGV-0181437_9	phrog_1357	255.2	0	major head protein	head and packaging
UniRef90	UHGV-0181437_9	UniRef90_UPI00103031BA	318.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0181437_9	748224.HMPREF9436_02545	284.0	0	N/A	N/A
Pfam	UHGV-0181437_9	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0181437_9	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0181437_9	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0181437_10	phrog_13908	224.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0181437_10	1410650.JHWL01000003_gene2831	138.0	7.01e-36	N/A	N/A
KOfam	UHGV-0181437_11	K07584	59.0	1e-16	N/A	N/A
PHROG	UHGV-0181437_11	phrog_4478	59.2	5.9e-17	peptidase	other
UniRef90	UHGV-0181437_11	UniRef90_A0A3A5TG51	65.1	0.0000000000128	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0181437_11	720554.Clocl_1210	50.4	0.00000148	Cysteine protease Prp	N/A
Pfam	UHGV-0181437_11	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0181437_11	COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0181437_12	phrog_156	293.4	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0181437_12	1410650.JHWL01000003_gene2833	580.0	0	N/A	N/A
structural_annotation	UHGV-0181437_12	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0181437_13	K06909	140.2	1.70006e-41	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0181437_13	phrog_979	154.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0181437_13	UniRef90_UPI0006875436	602.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0181437_13	1410650.JHWL01000003_gene2834	602.0	0	N/A	N/A
Pfam	UHGV-0181437_13	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0181437_13	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0181437_13	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0181437_14	UniRef90_A0A3D3D686	58.2	0.00000116	HTH psq-type domain-containing protein	N/A
Pfam	UHGV-0181437_14	PF05225	N/A	N/A	helix-turn-helix, Psq domain	HTH_psq
PHROG	UHGV-0181437_16	phrog_7566	85.1	5.7e-25	N/A	unknown function
UniRef90	UHGV-0181437_16	UniRef90_A0A371ATG2	79.7	2.33e-17	Phosphoenolpyruvate carboxykinase	N/A
eggNOG-mapper	UHGV-0181437_16	1304866.K413DRAFT_1198	98.2	2.08e-25	N/A	N/A
PHROG	UHGV-0181437_17	phrog_15077	90.0	4.7e-26	N/A	unknown function
UniRef90	UHGV-0181437_17	UniRef90_A0A174WLY0	207.0	0	N/A	N/A
eggNOG-mapper	UHGV-0181437_17	1280698.AUJS01000007_gene1019	222.0	0	N/A	N/A
structural_annotation	UHGV-0181437_17	PF11300,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0181437_18	phrog_8470	264.9	0	N/A	unknown function
UniRef90	UHGV-0181437_18	UniRef90_UPI001D08730A	215.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0181437_18	483218.BACPEC_01166	150.0	1.86e-35	PcfJ-like protein	N/A
Pfam	UHGV-0181437_18	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0181437_18	PF14284	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0181437_19	1235792.C808_00065	187.0	0	N/A	N/A
PHROG	UHGV-0181437_21	phrog_3584	155.2	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0181437_21	UniRef90_A0A1I5LZL1	192.0	0	Relaxase/Mobilisation nuclease domain-containing protein	N/A
eggNOG-mapper	UHGV-0181437_21	1235800.C819_00515	207.0	0	N/A	N/A
structural_annotation	UHGV-0181437_21	PF21578	N/A	N/A	N/A	N/A
PHROG	UHGV-0181437_22	phrog_32437	60.1	3.7e-17	N/A	unknown function
UniRef90	UHGV-0181437_22	UniRef90_A0A350VVB0	80.9	0.00000000000000626	SLT domain-containing protein	N/A
Pfam	UHGV-0181437_22	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
COG	UHGV-0181437_22	COG0741	N/A	N/A	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	N/A
structural_annotation	UHGV-0181437_22	PF01464,MF_01616,NF011856,COG0741	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0181437_23	PF17399	N/A	N/A	N/A	N/A
UniRef90	UHGV-0181437_27	UniRef90_UPI0011072322	80.5	3.37e-17	N/A	N/A
eggNOG-mapper	UHGV-0181437_27	1256908.HMPREF0373_00479	76.3	2.38e-16	N/A	N/A
structural_annotation	UHGV-0181437_27	PF14359,COG3613	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0181437_28	411468.CLOSCI_00322	57.4	0.000000000103	N/A	N/A
PHROG	UHGV-0181437_29	phrog_1257	46.8	0.00000000000052	ribosome associated inhibitor A; zinc finger domain	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0181437_29	UniRef90_A0A3E4LX24	100.0	3.25e-25	XRE family transcriptional regulator	N/A
KOfam	UHGV-0181437_30	K18830	61.3	2.1e-17	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0181437_30	phrog_2967	48.4	0.00000000000015	transcriptional regulator	transcription regulation
UniRef90	UHGV-0181437_30	UniRef90_A0A1C5PSE5	158.0	0	Predicted transcriptional regulator	N/A
eggNOG-mapper	UHGV-0181437_30	887325.HMPREF0381_0352	145.0	1.61149e-43	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0181437_30	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0181437_30	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0181437_30	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0181437_32	K07448	52.6	0.000000000000007	mrr; restriction system protein	N/A
UniRef90	UHGV-0181437_32	UniRef90_A0A6I3PLJ9	493.0	0	Mrr_cat domain-containing protein	N/A
eggNOG-mapper	UHGV-0181437_32	50960.LS81_07910	65.5	0.000000000893	Restriction endonuclease	N/A
Pfam	UHGV-0181437_32	PF04471	N/A	N/A	Restriction endonuclease	Mrr_cat
KOfam	UHGV-0181437_33	K06400	357.1	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0181437_33	phrog_95	363.0	0	integrase	integration and excision
UniRef90	UHGV-0181437_33	UniRef90_A0A413YU13	595.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0181437_33	411462.DORLON_00823	429.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0181437_33	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0181437_33	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0181437_33	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0181437_33	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0181437_33	PF00239,PF07508,PF13408,NF041201,COG1961	N/A	N/A	N/A	N/A