UHGV-0181567 (vOTU-046724)

Viral Genome: UHGV-0181567

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0181567
vOTU ID	vOTU-046724
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMEA2737820_a1_ct7887@circular@Siphoviridae__sp._ctVMl887
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9774
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.76
Jumbo phage	No

Genome content
Genome length (bp)	34,429
GC content	35.09%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	47
CDS density	93%
Average CDS length (bps)	682.28
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0181567_1	K18830	75.9	2.6e-22	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0181567_1	phrog_2967	56.4	5e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0181567_1	UniRef90_A0A1Q6KH79	190.0	0	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0181567_1	1235793.C809_03587	155.0	0	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0181567_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0181567_1	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0181567_1	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0181567_2	1235800.C819_02268	136.0	9.63e-37	N/A	N/A
AcrCatalog	UHGV-0181567_2	cluster_168545	82.0	2.38e-21	NA	N/A
KOfam	UHGV-0181567_3	K14059	134.1	1.9e-39	int; integrase	N/A
PHROG	UHGV-0181567_3	phrog_1	144.4	9.79508e-43	integrase	integration and excision
UniRef90	UHGV-0181567_3	UniRef90_A0A174PC01	410.0	0	Site-specific recombinase XerD	N/A
eggNOG-mapper	UHGV-0181567_3	1235792.C808_01553	379.0	0	Phage integrase family	N/A
Pfam	UHGV-0181567_3	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0181567_3	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0181567_3	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0181567_4	K17733	142.3	3.30006e-42	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	N/A
PHROG	UHGV-0181567_4	phrog_2649	138.4	6.40001e-41	endolysin	lysis
UniRef90	UHGV-0181567_4	UniRef90_A0A413R5J9	417.0	0	M15 family peptidase	N/A
eggNOG-mapper	UHGV-0181567_4	1123075.AUDP01000024_gene1109	151.0	9.66896e-43	D-alanyl-D-alanine carboxypeptidase	N/A
Pfam	UHGV-0181567_4	PF13539	N/A	N/A	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
COG	UHGV-0181567_4	COG1876	N/A	N/A	LD-carboxypeptidase LdcB, LAS superfamily	N/A
structural_annotation	UHGV-0181567_4	PF02557,MF_01924,NF000472,COG1876	N/A	N/A	N/A	N/A
PHROG	UHGV-0181567_5	phrog_443	59.9	7.7e-17	holin	lysis
UniRef90	UHGV-0181567_5	UniRef90_A0A1I0HNR6	81.3	7.23e-19	Holin, r1t family	N/A
eggNOG-mapper	UHGV-0181567_5	397288.C806_00114	80.1	3.47e-19	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0181567_5	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0181567_5	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0181567_6	phrog_4105	94.5	7.9e-28	N/A	unknown function
eggNOG-mapper	UHGV-0181567_6	1121105.ATXL01000027_gene760	79.3	1.85e-17	N/A	N/A
eggNOG-mapper	UHGV-0181567_8	476272.RUMHYD_00002	90.1	0.00000000000000191	N/A	N/A
structural_annotation	UHGV-0181567_8	PF10651,NF032891	N/A	N/A	N/A	N/A
PHROG	UHGV-0181567_9	phrog_21765	52.2	0.0000000000000066	N/A	unknown function
eggNOG-mapper	UHGV-0181567_9	1235793.C809_01950	73.6	0.0000000000035	Phage tail-collar fibre protein	N/A
COG	UHGV-0181567_9	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
PHROG	UHGV-0181567_10	phrog_521	60.5	1.9e-17	tail protein	tail
UniRef90	UHGV-0181567_10	UniRef90_A0A373VS93	158.0	0	N/A	N/A
eggNOG-mapper	UHGV-0181567_10	397288.C806_00117	90.5	2.19e-20	N/A	N/A
Pfam	UHGV-0181567_10	PF10076	N/A	N/A	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
COG	UHGV-0181567_10	COG4385	N/A	N/A	Bacteriophage P2-related tail formation protein	N/A
structural_annotation	UHGV-0181567_10	PF10076,TIGR02242,COG3778	N/A	N/A	N/A	N/A
PHROG	UHGV-0181567_11	phrog_6	121.4	9.1e-36	baseplate protein	tail
UniRef90	UHGV-0181567_11	UniRef90_A0A373VSF8	424.0	0	Baseplate_J domain-containing protein	N/A
eggNOG-mapper	UHGV-0181567_11	1408324.JNJK01000006_gene1396	255.0	0	Baseplate J-like protein	N/A
Pfam	UHGV-0181567_11	PF04865	N/A	N/A	Baseplate J-like protein	Baseplate_J
COG	UHGV-0181567_11	COG3299	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0181567_11	PF04865,PF21379,MF_04102,TIGR02243,COG3299	N/A	N/A	N/A	N/A
PHROG	UHGV-0181567_12	phrog_120	62.0	8.9e-18	baseplate protein	tail
UniRef90	UHGV-0181567_12	UniRef90_A0A373VU59	187.0	0	N/A	N/A
eggNOG-mapper	UHGV-0181567_12	397288.C806_00060	124.0	9.6e-35	N/A	N/A
Pfam	UHGV-0181567_12	PF10934	N/A	N/A	N/A	DUF2634
COG	UHGV-0181567_12	COG3628	N/A	N/A	Phage baseplate assembly protein W	N/A
structural_annotation	UHGV-0181567_12	PF10934,MF_02010,TIGR03357,COG3628	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0181567_13	PF01957,MF_00216,TIGR00523,COG0361	N/A	N/A	N/A	N/A
PHROG	UHGV-0181567_14	phrog_400	229.3	0	tail protein	tail
UniRef90	UHGV-0181567_14	UniRef90_A0A6L5XWJ4	277.0	0	NlpC/P60 family protein	N/A
eggNOG-mapper	UHGV-0181567_14	1408324.JNJK01000006_gene1393	273.0	0	NLP P60 protein	N/A
COG	UHGV-0181567_14	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0181567_14	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0181567_15	phrog_380	134.3	6e-40	endolysin	lysis
UniRef90	UHGV-0181567_15	UniRef90_A0A373VS92	270.0	0	LysM domain-containing protein	N/A
eggNOG-mapper	UHGV-0181567_15	1408324.JNJK01000006_gene1392	154.0	7.00649e-45	LysM domain	N/A
Pfam	UHGV-0181567_15	PF21821	N/A	N/A	Dit-like phage tail protein	Dit_like
COG	UHGV-0181567_15	COG1652	N/A	N/A	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	N/A
structural_annotation	UHGV-0181567_15	PF21821,MF_02014,TIGR02126,NF010723,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0181567_16	phrog_1533	516.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0181567_16	UniRef90_A0A373VU03	921.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0181567_16	1408324.JNJK01000006_gene1391	800.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0181567_16	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0181567_16	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0181567_16	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0181567_16	PF10145,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0181567_17	phrog_389	49.5	0.000000000000075	tail protein XkdN-like	tail
UniRef90	UHGV-0181567_17	UniRef90_D4MVP5	79.3	2.57e-16	Phage XkdN-like protein	N/A
eggNOG-mapper	UHGV-0181567_17	1408324.JNJK01000006_gene1389	129.0	1.49e-36	Phage XkdN-like tail assembly chaperone protein, TAC	N/A
Pfam	UHGV-0181567_17	PF08890	N/A	N/A	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
structural_annotation	UHGV-0181567_17	PF08890	N/A	N/A	N/A	N/A
PHROG	UHGV-0181567_18	phrog_365	159.4	0	tail protein	tail
UniRef90	UHGV-0181567_18	UniRef90_A0A373VS88	252.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0181567_18	1408324.JNJK01000006_gene1388	177.0	0	Phage tail tube protein	N/A
Pfam	UHGV-0181567_18	PF09393	N/A	N/A	Phage tail tube protein	DUF2001
structural_annotation	UHGV-0181567_18	PF09393,TIGR02241,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0181567_19	phrog_1480	385.1	0	tail sheath	tail
UniRef90	UHGV-0181567_19	UniRef90_A0A3N1XU14	384.0	0	Tail sheath protein	N/A
eggNOG-mapper	UHGV-0181567_19	1408324.JNJK01000006_gene1387	397.0	0	Phage tail sheath C-terminal domain	N/A
Pfam	UHGV-0181567_19	PF04984	N/A	N/A	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
Pfam	UHGV-0181567_19	PF17482	N/A	N/A	Phage tail sheath C-terminal domain	Phage_sheath_1C
structural_annotation	UHGV-0181567_19	PF10758,COG3497	N/A	N/A	N/A	N/A
PHROG	UHGV-0181567_20	phrog_525	76.3	4.3e-22	N/A	unknown function
eggNOG-mapper	UHGV-0181567_20	397288.C806_00069	99.0	1.81e-24	N/A	N/A
Pfam	UHGV-0181567_20	PF20765	N/A	N/A	N/A	DUF6838
structural_annotation	UHGV-0181567_20	PF20765,TIGR01633,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0181567_21	phrog_5	44.6	0.0000000000034	tail completion or Neck1 protein	connector
UniRef90	UHGV-0181567_21	UniRef90_A0A6L5XY39	115.0	5.05e-30	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0181567_21	293826.Amet_2418	58.2	0.0000000159	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0181567_21	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
PHROG	UHGV-0181567_22	phrog_25	58.6	1.1e-16	head closure Hc1	connector
UniRef90	UHGV-0181567_22	UniRef90_UPI001D0F4C03	63.9	0.000000000076	phage head closure protein	N/A
eggNOG-mapper	UHGV-0181567_22	634956.Geoth_0792	59.7	0.000000000528	Phage head-tail joining protein	N/A
Pfam	UHGV-0181567_22	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0181567_22	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0181567_22	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0181567_22	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0181567_23	UniRef90_A0A373VSB0	132.0	3.11e-38	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0181567_23	796940.HMPREF9628_00142	72.4	0.00000000000000242	Phage gp6-like head-tail connector protein	N/A
NCBIFam	UHGV-0181567_23	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0181567_23	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0181567_25	phrog_10	189.8	0	major head protein	head and packaging
UniRef90	UHGV-0181567_25	UniRef90_A0A373VS97	530.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0181567_25	1196031.ALEG01000039_gene1816	239.0	0	Phage capsid family	N/A
Pfam	UHGV-0181567_25	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0181567_25	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0181567_25	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0181567_25	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0181567_26	K06904	55.6	0.0000000000000011	N/A	N/A
PHROG	UHGV-0181567_26	phrog_80	80.2	4e-23	head maturation protease	head and packaging
UniRef90	UHGV-0181567_26	UniRef90_A0A373VU17	338.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0181567_26	1196031.ALEG01000039_gene1815	140.0	3.75e-39	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0181567_26	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
COG	UHGV-0181567_26	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0181567_26	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0181567_27	phrog_12	181.6	0	portal protein	head and packaging
UniRef90	UHGV-0181567_27	UniRef90_A0A373VSC6	654.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0181567_27	397288.C806_00075	437.0	0	Portal protein	N/A
Pfam	UHGV-0181567_27	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0181567_27	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0181567_27	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0181567_27	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0181567_28	phrog_9	249.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0181567_28	UniRef90_A0A373VUG2	1006.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0181567_28	1414720.CBYM010000002_gene575	725.0	0	Terminase	N/A
Pfam	UHGV-0181567_28	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0181567_28	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0181567_28	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0181567_28	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
UniRef90	UHGV-0181567_29	UniRef90_A0A1C6JNN5	162.0	0	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0181567_29	397288.C806_00077	178.0	0	N/A	N/A
structural_annotation	UHGV-0181567_29	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0181567_30	phrog_144	60.5	3.3e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0181567_30	UniRef90_A0A373VSA3	167.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0181567_30	796940.HMPREF9628_00152	116.0	9.11e-32	endonuclease activity	N/A
COG	UHGV-0181567_30	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0181567_31	phrog_36	58.2	1.9e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0181567_31	UniRef90_A0A3D3WBD0	55.8	0.000000409	Sigma70_r4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0181567_31	1203606.HMPREF1526_01896	97.8	9.86e-24	N/A	N/A
structural_annotation	UHGV-0181567_31	PF07374,TIGR01636	N/A	N/A	N/A	N/A
UniRef90	UHGV-0181567_33	UniRef90_A0A373LPL3	123.0	8.69e-36	Chemotaxis protein	N/A
eggNOG-mapper	UHGV-0181567_33	1042156.CXIVA_01520	68.9	0.00000000000000727	N/A	N/A
structural_annotation	UHGV-0181567_33	PF10723,NF008671,COG4710	N/A	N/A	N/A	N/A
KOfam	UHGV-0181567_35	K00558	193.2	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0181567_35	phrog_116	231.0	0	DNA methyltransferase	other
UniRef90	UHGV-0181567_35	UniRef90_A0A415L403	1029.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0181567_35	1235792.C808_05321	748.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0181567_35	MTase_II_00020	102.5	9.4e-34	Type II methyltransferase	RM
Pfam	UHGV-0181567_35	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0181567_35	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0181567_35	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0181567_38	phrog_15077	117.3	2.5e-34	N/A	unknown function
UniRef90	UHGV-0181567_38	UniRef90_A0A3E3IZW1	190.0	0	N/A	N/A
eggNOG-mapper	UHGV-0181567_38	411902.CLOBOL_05696	204.0	0	N/A	N/A
structural_annotation	UHGV-0181567_38	PF11300,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0181567_39	phrog_8470	246.1	0	N/A	unknown function
UniRef90	UHGV-0181567_39	UniRef90_UPI001D0E6B3F	649.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0181567_39	411902.CLOBOL_05697	553.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0181567_39	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0181567_39	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0181567_40	phrog_4433	56.7	1.4e-18	N/A	unknown function
eggNOG-mapper	UHGV-0181567_40	1256908.HMPREF0373_03002	104.0	5.69e-25	N/A	N/A
structural_annotation	UHGV-0181567_40	PF12120,NF000318	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0181567_41	483218.BACPEC_01167	92.8	1.57e-21	N/A	N/A
PHROG	UHGV-0181567_42	phrog_19490	48.4	0.00000000000017	N/A	unknown function
Pfam	UHGV-0181567_43	PF09643	N/A	N/A	YopX protein	YopX
PHROG	UHGV-0181567_44	phrog_3584	161.9	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0181567_44	610130.Closa_0713	179.0	0	N/A	N/A
structural_annotation	UHGV-0181567_44	PF11726	N/A	N/A	N/A	N/A
PHROG	UHGV-0181567_46	phrog_6058	49.8	0.000000000000046	N/A	unknown function
UniRef90	UHGV-0181567_46	UniRef90_A0A0U9H7T0	64.7	0.00000000000417	Modification methylase SinI	N/A
eggNOG-mapper	UHGV-0181567_46	411468.CLOSCI_01465	77.0	1.05e-17	N/A	N/A
structural_annotation	UHGV-0181567_46	PF12728,TIGR01764	N/A	N/A	N/A	N/A