UHGV-0181598 (vOTU-166109)

Viral Genome: UHGV-0181598

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0181598
vOTU ID	vOTU-166109
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMEA1906523_a1_ct55738_vs1@Siphoviridae__sp._ctbHN1
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.14 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9794
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.33
Jumbo phage	No

Genome content
Genome length (bp)	29,251
GC content	39.94%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	44
CDS density	93%
Average CDS length (bps)	615.96
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 83.14)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0181598_3	UniRef90_A0A6I3PLH9	117.0	1.43e-33	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0181598_3	411459.RUMOBE_01706	53.5	0.00000000566	N/A	N/A
Pfam	UHGV-0181598_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0181598_3	PF01381,NF040522,COG2944	N/A	N/A	N/A	N/A
KOfam	UHGV-0181598_4	K01448	55.4	9.2e-16	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0181598_4	phrog_1794	83.3	4.3e-24	amidase	lysis
UniRef90	UHGV-0181598_4	UniRef90_A0A373KFY8	434.0	0	SH3b domain-containing protein	N/A
eggNOG-mapper	UHGV-0181598_4	1226322.HMPREF1545_03576	89.0	1.27e-17	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0181598_4	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0181598_4	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-0181598_4	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0181598_4	PF01520,PF01471,MF_00562,TIGR02883,TIGR03979,COG0860,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0181598_5	phrog_18591	137.2	7.20001e-41	N/A	unknown function
eggNOG-mapper	UHGV-0181598_5	272624.lpg2561	186.0	0	N/A	N/A
PHROG	UHGV-0181598_6	phrog_443	62.4	1.3e-17	holin	lysis
UniRef90	UHGV-0181598_6	UniRef90_R6MWB0	90.5	1.56e-22	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0181598_6	1298920.KI911353_gene2669	83.6	1.38e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0181598_6	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0181598_6	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0181598_7	phrog_1863	72.2	5.9e-22	N/A	unknown function
UniRef90	UHGV-0181598_7	UniRef90_UPI001F223E8B	105.0	6.23e-28	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0181598_7	1226322.HMPREF1545_04027	75.9	3.8e-17	N/A	N/A
UniRef90	UHGV-0181598_9	UniRef90_A0A374N9Y2	223.0	0	N/A	N/A
structural_annotation	UHGV-0181598_9	PF10651,PF08931,TIGR02268	N/A	N/A	N/A	N/A
PHROG	UHGV-0181598_10	phrog_1067	98.8	1.5e-29	minor head protein	head and packaging
UniRef90	UHGV-0181598_10	UniRef90_A0A1G5CPD2	154.0	1.41e-39	Phage minor structural protein, N-terminal region	N/A
eggNOG-mapper	UHGV-0181598_10	1462527.CCDM010000003_gene3730	62.4	0.000000152	gp58-like protein	N/A
Pfam	UHGV-0181598_10	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0181598_10	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0181598_10	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0181598_10	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0181598_11	phrog_33	82.2	1.1e-23	distal tail protein Dit	tail
UniRef90	UHGV-0181598_11	UniRef90_A0A1G5CPA2	133.0	3.34e-34	Phage-related protein	N/A
eggNOG-mapper	UHGV-0181598_11	1160721.RBI_I01575	94.0	3.5e-20	Phage tail protein	N/A
COG	UHGV-0181598_11	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0181598_11	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0181598_12	K20283	62.3	1.1e-18	GOLGA4; golgin subfamily A member 4	N/A
PHROG	UHGV-0181598_12	phrog_5218	272.2	0	N/A	unknown function
UniRef90	UHGV-0181598_12	UniRef90_UPI000E474EFE	1481.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0181598_12	999413.HMPREF1094_02001	272.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0181598_12	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0181598_12	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0181598_12	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0181598_13	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0181598_14	phrog_88	76.1	4.7e-22	major tail protein	tail
UniRef90	UHGV-0181598_14	UniRef90_A0A1G5CNS8	152.0	3.89561e-43	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0181598_14	1321782.HMPREF1986_01362	65.5	0.000000000139	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0181598_14	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0181598_14	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
UniRef90	UHGV-0181598_15	UniRef90_UPI000E5564A4	271.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0181598_15	610130.Closa_0747	73.6	0.00000000000000876	COG NOG18351 non supervised orthologous group	N/A
Pfam	UHGV-0181598_15	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0181598_15	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0181598_16	879305.HMPREF9290_0134	51.2	0.00000104	N/A	N/A
structural_annotation	UHGV-0181598_16	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
PHROG	UHGV-0181598_17	phrog_19734	72.0	7.7e-21	N/A	unknown function
eggNOG-mapper	UHGV-0181598_17	86416.Clopa_0343	59.3	0.000000000915	N/A	N/A
NCBIFam	UHGV-0181598_17	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0181598_17	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0181598_18	phrog_749	56.2	5.3e-16	N/A	unknown function
UniRef90	UHGV-0181598_18	UniRef90_A0A1G5CMX8	107.0	4.3e-28	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0181598_18	1211817.CCAT010000053_gene2133	57.8	0.00000000165	N/A	N/A
PHROG	UHGV-0181598_19	phrog_10	122.4	4.5e-36	major head protein	head and packaging
UniRef90	UHGV-0181598_19	UniRef90_A0A412ULW9	727.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0181598_19	1211817.CCAT010000053_gene2132	328.0	0	Phage capsid family	N/A
Pfam	UHGV-0181598_19	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0181598_19	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0181598_19	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0181598_19	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0181598_20	K01358	143.2	2.49992e-42	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0181598_20	phrog_94	214.1	0	head maturation protease	head and packaging
UniRef90	UHGV-0181598_20	UniRef90_A0A412ULU1	431.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0181598_20	86416.Clopa_0340	177.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0181598_20	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0181598_20	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0181598_20	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0181598_21	phrog_12	97.4	1.1e-28	portal protein	head and packaging
UniRef90	UHGV-0181598_21	UniRef90_A0A412ULV9	746.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0181598_21	1415774.U728_1254	265.0	0	Phage portal protein	N/A
Pfam	UHGV-0181598_21	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0181598_21	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0181598_21	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0181598_21	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0181598_22	phrog_9	301.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0181598_22	UniRef90_A0A412UM03	1003.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0181598_22	86416.Clopa_0337	629.0	0	Phage Terminase	N/A
Pfam	UHGV-0181598_22	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0181598_22	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0181598_22	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0181598_22	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0181598_23	phrog_5110	82.7	3.2e-24	terminase small subunit	head and packaging
UniRef90	UHGV-0181598_23	UniRef90_A0A1M5U1D5	114.0	8.42e-31	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0181598_23	86416.Clopa_0336	100.0	2.96e-26	N/A	N/A
Pfam	UHGV-0181598_23	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0181598_23	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0181598_24	phrog_119	70.7	2.2e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0181598_24	UniRef90_A0A412ULY9	222.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0181598_24	1158607.UAU_01026	103.0	2.52e-27	HNH endonuclease	N/A
Pfam	UHGV-0181598_24	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0181598_24	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0181598_25	phrog_31049	41.1	0.00000000000023	N/A	unknown function
eggNOG-mapper	UHGV-0181598_25	394503.Ccel_3053	53.9	0.000000286	N/A	N/A
structural_annotation	UHGV-0181598_25	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0181598_26	phrog_3584	149.9	1.68156e-44	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0181598_26	1235800.C819_00515	70.5	0.0000000000134	N/A	N/A
structural_annotation	UHGV-0181598_26	PF21578,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-0181598_29	phrog_824	145.6	1.49939e-43	N/A	unknown function
UniRef90	UHGV-0181598_29	UniRef90_A0A3D3D6C6	251.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0181598_29	397288.C806_00096	161.0	0	VRR_NUC	N/A
Pfam	UHGV-0181598_29	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0181598_29	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-0181598_30	phrog_24518	76.0	5.2e-22	N/A	unknown function
eggNOG-mapper	UHGV-0181598_30	1519439.JPJG01000077_gene922	107.0	2.94e-26	N/A	N/A
KOfam	UHGV-0181598_31	K03427	164.4	0	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-0181598_31	phrog_6380	362.7	0	DNA methyltransferase	other
UniRef90	UHGV-0181598_31	UniRef90_UPI001B3C6DA9	662.0	0	N-6 DNA methylase	N/A
eggNOG-mapper	UHGV-0181598_31	1444306.JFZC01000034_gene2643	321.0	0	type I restriction-modification system	N/A
PADLOC	UHGV-0181598_31	MTase_I_00005	103.7	5.2e-31	Type I methyltransferase	RM
Pfam	UHGV-0181598_31	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-0181598_31	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0181598_31	PF02384,MF_01872,TIGR00497,COG0286	N/A	N/A	N/A	N/A
KOfam	UHGV-0181598_32	K03497	155.9	0	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0181598_32	phrog_6218	237.0	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0181598_32	UniRef90_UPI000E47CAB6	786.0	0	ParB/RepB/Spo0J family partition protein	N/A
eggNOG-mapper	UHGV-0181598_32	394503.Ccel_3306	235.0	0	Belongs to the ParB family	N/A
Pfam	UHGV-0181598_32	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
NCBIFam	UHGV-0181598_32	TIGR00180.1	N/A	N/A	ParB/RepB/Spo0J family partition protein	N/A
COG	UHGV-0181598_32	COG0710	N/A	N/A	3-dehydroquinate dehydratase	N/A
structural_annotation	UHGV-0181598_32	PF18579,MF_02015,TIGR00180,COG1475	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0181598_36	COG1862	N/A	N/A	N/A	N/A
PHROG	UHGV-0181598_37	phrog_6058	42.6	0.0000000000067	N/A	unknown function
structural_annotation	UHGV-0181598_37	NF033787	N/A	N/A	N/A	N/A
PHROG	UHGV-0181598_38	phrog_599	41.0	0.000000000037	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0181598_38	UniRef90_UPI0015F48AC0	153.0	0	Lar family restriction alleviation protein	N/A
Pfam	UHGV-0181598_38	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-0181598_38	PF14354,TIGR03655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0181598_39	UniRef90_UPI000E4DC4DA	129.0	1.2e-35	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-0181598_39	PF15597	N/A	N/A	N/A	N/A
KOfam	UHGV-0181598_40	K00390	87.5	1.7e-25	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0181598_40	phrog_424	115.7	3.9e-34	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0181598_40	UniRef90_UPI001C034617	553.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0181598_40	1408437.JNJN01000032_gene2312	332.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-0181598_40	BrxP_00001	77.2	7e-23	BrxP	BREX
Pfam	UHGV-0181598_40	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0181598_40	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0181598_40	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
UniRef90	UHGV-0181598_44	UniRef90_A0A1C5RYU8	117.0	2.37e-33	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-0181598_44	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-0181598_44	NF007260	N/A	N/A	N/A	N/A