UHGV-0182638 (vOTU-117565)

Viral Genome: UHGV-0182638

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0182638
vOTU ID	vOTU-117565
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_593609
Associated BioSample	SAMN09781763
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.41 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.969
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.49
Jumbo phage	No

Genome content
Genome length (bp)	22,805
GC content	54.71%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	35
CDS density	90%
Average CDS length (bps)	586.20
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 63.41)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0182638_1	UniRef90_A0A3D0DP60	58.9	0.000000000326	Zinc transporter	N/A
eggNOG-mapper	UHGV-0182638_1	411483.FAEPRAA2165_02238	94.7	2.56e-23	Metal cation transporter, ZIP family	N/A
COG	UHGV-0182638_1	COG0428	N/A	N/A	Zinc transporter ZupT	N/A
PHROG	UHGV-0182638_2	phrog_29609	127.0	7.3e-38	N/A	unknown function
UniRef90	UHGV-0182638_2	UniRef90_A0A174AJM5	191.0	0	PBECR2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0182638_2	1160721.RBI_I01634	128.0	1e-36	N/A	N/A
Pfam	UHGV-0182638_2	PF18810	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2	PBECR2
structural_annotation	UHGV-0182638_2	PF18825,COG2929	N/A	N/A	N/A	N/A
KOfam	UHGV-0182638_3	K10804	53.4	0.0000000000000047	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	N/A
PHROG	UHGV-0182638_3	phrog_5240	129.2	3.4e-38	tail fiber protein	tail
UniRef90	UHGV-0182638_3	UniRef90_A0A416HS30	135.0	2.42e-34	SGNH/GDSL hydrolase family protein	N/A
eggNOG-mapper	UHGV-0182638_3	86416.Clopa_2555	100.0	3.57e-20	lipolytic protein G-D-S-L family	N/A
Pfam	UHGV-0182638_3	PF13472	N/A	N/A	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
COG	UHGV-0182638_3	COG2755	N/A	N/A	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	N/A
KOfam	UHGV-0182638_4	K19304	119.0	5.3e-35	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-0182638_4	phrog_10030	94.8	3.3e-28	tail length tape measure protein	tail
UniRef90	UHGV-0182638_4	UniRef90_A0A3D1PRD1	409.0	0	Peptidase_M23 domain-containing protein	N/A
eggNOG-mapper	UHGV-0182638_4	1382304.JNIL01000001_gene2694	101.0	3.18e-22	G5	N/A
Pfam	UHGV-0182638_4	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-0182638_4	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-0182638_4	PF01551,NF040883	N/A	N/A	N/A	N/A
PHROG	UHGV-0182638_5	phrog_1863	71.0	9.4e-21	N/A	unknown function
eggNOG-mapper	UHGV-0182638_5	665956.HMPREF1032_03922	105.0	6.31e-29	N/A	N/A
PHROG	UHGV-0182638_6	phrog_1129	62.2	6.2e-18	holin	lysis
UniRef90	UHGV-0182638_6	UniRef90_A0A367FT42	168.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0182638_6	693746.OBV_13280	112.0	1.76e-31	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0182638_6	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0182638_6	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-0182638_7	K06400	382.8	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0182638_7	phrog_95	368.8	0	integrase	integration and excision
UniRef90	UHGV-0182638_7	UniRef90_UPI00195D2465	361.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0182638_7	1235835.C814_01150	354.0	0	N/A	N/A
Pfam	UHGV-0182638_7	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0182638_7	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0182638_7	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0182638_7	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0182638_7	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0182638_8	K10716	115.8	4.2e-34	kch, trkA, mthK, pch; voltage-gated potassium channel	N/A
PHROG	UHGV-0182638_8	phrog_7872	130.3	1.4e-38	N/A	unknown function
UniRef90	UHGV-0182638_8	UniRef90_G9RV49	258.0	0	Ion_trans domain-containing protein	N/A
eggNOG-mapper	UHGV-0182638_8	665956.HMPREF1032_00150	258.0	0	Ion transport protein	N/A
Pfam	UHGV-0182638_8	PF00520	N/A	N/A	Ion transport protein	Ion_trans
COG	UHGV-0182638_8	COG0664	N/A	N/A	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases	N/A
structural_annotation	UHGV-0182638_8	PF00520,NF040645	N/A	N/A	N/A	N/A
KOfam	UHGV-0182638_9	K22300	63.2	4.8e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0182638_9	phrog_8	63.4	5.3e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0182638_9	UniRef90_UPI000B365C55	68.2	0.0000000000031	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0182638_9	580331.Thit_1413	57.8	0.00000000595	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0182638_9	retron_type_VI_hth_cluster2_1	44.6	0.0000000000029	N/A	Retron
Pfam	UHGV-0182638_9	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0182638_9	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0182638_9	PF12844,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0182638_10	K22300	63.8	3.6e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0182638_10	phrog_8	54.9	0.0000000000000021	transcriptional regulator	transcription regulation
UniRef90	UHGV-0182638_10	UniRef90_A0A2V2F780	71.2	0.00000000000000515	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0182638_10	669262.COK_1536	56.2	0.000000000717	sequence-specific DNA binding	N/A
Pfam	UHGV-0182638_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0182638_10	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0182638_10	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0182638_12	K00390	52.7	0.0000000000000021	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0182638_12	phrog_424	86.7	1.2e-25	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0182638_12	UniRef90_A0A3B9Z5Z5	308.0	0	Phosphoadenosine phosphosulfate reductase	N/A
eggNOG-mapper	UHGV-0182638_12	397291.C804_00950	284.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-0182638_12	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0182638_12	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0182638_12	PF01507,MF_00063,TIGR02055,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-0182638_20	K03698	55.0	0.0000000000000013	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	N/A
PHROG	UHGV-0182638_20	phrog_28876	137.4	9.40005e-41	metal-dependent phosphohydrolase	other
UniRef90	UHGV-0182638_20	UniRef90_UPI00137B488C	162.0	0	HD domain-containing protein	N/A
eggNOG-mapper	UHGV-0182638_20	742738.HMPREF9460_00168	155.0	5.60519e-45	metal-dependent phosphohydrolase, HD sub domain	N/A
COG	UHGV-0182638_20	COG3481	N/A	N/A	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	N/A
structural_annotation	UHGV-0182638_20	PF07514,MF_01427,NF010007,COG3481	N/A	N/A	N/A	N/A
PHROG	UHGV-0182638_21	phrog_3136	72.4	4.7e-21	N/A	unknown function
UniRef90	UHGV-0182638_21	UniRef90_A0A5B5WVN6	60.1	0.0000000125	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0182638_21	1235793.C809_02645	72.0	0.000000000000592	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0182638_21	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0182638_21	PF08819,MF_00684,NF003443,COG4933	N/A	N/A	N/A	N/A
KOfam	UHGV-0182638_22	K00571	64.0	2.8e-18	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0182638_22	phrog_67	61.4	1.3e-17	DNA methyltransferase	other
UniRef90	UHGV-0182638_22	UniRef90_UPI00096AAFE4	168.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0182638_22	1444310.JANV01000096_gene3256	84.3	8.05e-16	DNA methylase	N/A
PADLOC	UHGV-0182638_22	MTase_II_00051	80.8	3.6e-23	Type II methyltransferase	RM
Pfam	UHGV-0182638_22	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0182638_22	COG2189	N/A	N/A	Adenine specific DNA methylase Mod	N/A
PHROG	UHGV-0182638_23	phrog_3584	201.6	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0182638_23	525254.HMPREF0072_1311	129.0	6.22e-33	N/A	N/A
structural_annotation	UHGV-0182638_23	PF21578	N/A	N/A	N/A	N/A
PHROG	UHGV-0182638_24	phrog_37023	109.6	2.2e-32	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0182638_24	UniRef90_A0A6S6XBJ8	153.0	8.40779e-45	Tn7_Tnp_TnsA_N domain-containing protein	N/A
eggNOG-mapper	UHGV-0182638_24	1200557.JHWV01000006_gene1745	51.2	0.00000729	N/A	N/A
Pfam	UHGV-0182638_24	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0182638_24	PF06356,MF_04160,NF002584	N/A	N/A	N/A	N/A
PHROG	UHGV-0182638_25	phrog_36399	90.2	2.2e-26	N/A	unknown function
eggNOG-mapper	UHGV-0182638_25	1226322.HMPREF1545_00099	81.3	2.79e-18	N/A	N/A
PHROG	UHGV-0182638_26	phrog_8470	224.6	0	N/A	unknown function
UniRef90	UHGV-0182638_26	UniRef90_UPI001F1BC041	203.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0182638_26	1007096.BAGW01000031_gene117	154.0	8.83e-38	PcfJ-like protein	N/A
Pfam	UHGV-0182638_26	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0182638_26	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0182638_27	phrog_15609	103.4	2.1e-30	N/A	unknown function
eggNOG-mapper	UHGV-0182638_27	1514668.JOOA01000001_gene225	78.6	0.000000000000178	N/A	N/A
structural_annotation	UHGV-0182638_27	PF11300,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0182638_29	phrog_36	70.1	3.6e-20	transcriptional regulator	transcription regulation
structural_annotation	UHGV-0182638_29	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
KOfam	UHGV-0182638_31	K07451	45.0	0.0000000000018	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0182638_31	phrog_119	57.0	3.2e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0182638_31	UniRef90_A0A7X5HXL9	86.7	8.88e-20	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0182638_31	665956.HMPREF1032_00125	120.0	9.09e-34	HNH nucleases	N/A
COG	UHGV-0182638_31	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0182638_32	phrog_5110	70.7	1.6e-20	terminase small subunit	head and packaging
UniRef90	UHGV-0182638_32	UniRef90_A0A4U7JDP0	100.0	2.04e-25	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0182638_32	665956.HMPREF1032_00124	104.0	7.28e-28	N/A	N/A
Pfam	UHGV-0182638_32	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0182638_32	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0182638_33	phrog_9	263.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0182638_33	UniRef90_UPI001C46A542	627.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0182638_33	665956.HMPREF1032_00123	620.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0182638_33	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0182638_33	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0182638_33	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0182638_33	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0182638_34	phrog_12	104.9	3.8e-31	portal protein	head and packaging
UniRef90	UHGV-0182638_34	UniRef90_A0A7G8TDY8	292.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0182638_34	86416.Clopa_0339	263.0	0	Phage portal protein	N/A
Pfam	UHGV-0182638_34	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0182638_34	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0182638_34	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0182638_34	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0182638_35	K01358	127.6	1.2e-37	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0182638_35	phrog_94	192.6	0	head maturation protease	head and packaging
UniRef90	UHGV-0182638_35	UniRef90_R4JX52	177.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0182638_35	86416.Clopa_0340	177.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0182638_35	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0182638_35	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A