UHGV-0183280 (vOTU-147876)

Viral Genome: UHGV-0183280

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0183280
vOTU ID	vOTU-147876
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMEA1906534_a1_ct101957_vs2@Siphoviridae__sp._ctBGP2
Associated BioSample	SAMEA1906534
Viral genome confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	77.54 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9671
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.47
Jumbo phage	No

Genome content
Genome length (bp)	46,837
GC content	54.68%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	42
CDS density	91%
Average CDS length (bps)	1,014.50
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 77.54)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0183280_1	phrog_3777	42.7	0.0000000000053	N/A	unknown function
UniRef90	UHGV-0183280_1	UniRef90_UPI001BB359C5	177.0	0	N/A	N/A
eggNOG-mapper	UHGV-0183280_1	658086.HMPREF0994_02118	79.7	9.23e-16	N/A	N/A
Pfam	UHGV-0183280_1	PF12957	N/A	N/A	N/A	DUF3846
COG	UHGV-0183280_1	COG4227	N/A	N/A	Antirestriction protein ArdC	N/A
structural_annotation	UHGV-0183280_1	PF12957	N/A	N/A	N/A	N/A
UniRef90	UHGV-0183280_5	UniRef90_A0A2P8EL11	125.0	1.94e-33	DarA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0183280_7	877414.ATWA01000038_gene1530	50.1	0.00000103	N/A	N/A
COG	UHGV-0183280_7	COG2105	N/A	N/A	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	N/A
PHROG	UHGV-0183280_9	phrog_6231	89.1	2.7e-26	N/A	unknown function
UniRef90	UHGV-0183280_9	UniRef90_A0A174ULE2	149.0	2.8026e-45	Nmad4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0183280_9	665950.HMPREF1025_02706	97.4	1.86e-25	N/A	N/A
AcrCatalog	UHGV-0183280_9	cluster_18564	85.9	2.92e-25	NA	N/A
Pfam	UHGV-0183280_9	PF18756	N/A	N/A	Nucleotide modification associated domain 4	Nmad4
structural_annotation	UHGV-0183280_9	PF18756	N/A	N/A	N/A	N/A
PHROG	UHGV-0183280_11	phrog_83	171.6	0	terminase small subunit	head and packaging
UniRef90	UHGV-0183280_11	UniRef90_A0A252F682	277.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0183280_11	397288.C806_00757	258.0	0	Phage terminase, small subunit	N/A
Pfam	UHGV-0183280_11	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
NCBIFam	UHGV-0183280_11	TIGR01558.1	N/A	N/A	phage terminase small subunit P27 family	N/A
COG	UHGV-0183280_11	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0183280_11	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0183280_12	phrog_9	457.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0183280_12	UniRef90_A0A2X2UJW4	1020.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0183280_12	689781.AUJX01000031_gene115	868.0	0	Terminase-like family	N/A
Pfam	UHGV-0183280_12	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0183280_12	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0183280_12	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0183280_12	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0183280_13	phrog_443	51.4	0.000000000000031	holin	lysis
UniRef90	UHGV-0183280_13	UniRef90_A0A2X2UQE9	117.0	4.07e-33	Phage membrane protein	N/A
eggNOG-mapper	UHGV-0183280_13	1298920.KI911353_gene2669	62.4	0.00000000000387	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0183280_13	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0183280_13	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0183280_14	phrog_12	385.6	0	portal protein	head and packaging
UniRef90	UHGV-0183280_14	UniRef90_A0A351TJR4	776.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0183280_14	1341157.RF007C_02645	659.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0183280_14	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0183280_14	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0183280_14	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0183280_14	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0183280_15	K01358	165.9	0	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0183280_15	phrog_94	263.9	0	head maturation protease	head and packaging
UniRef90	UHGV-0183280_15	UniRef90_A0A1C6DST8	390.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0183280_15	641112.ACOK01000113_gene2073	312.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0183280_15	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0183280_15	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0183280_15	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0183280_16	phrog_10	319.8	0	major head protein	head and packaging
UniRef90	UHGV-0183280_16	UniRef90_A0A174T878	739.0	0	Phage major capsid protein, HK97 family	N/A
eggNOG-mapper	UHGV-0183280_16	1341157.RF007C_02640	569.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0183280_16	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0183280_16	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0183280_16	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0183280_16	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0183280_17	phrog_40	43.4	0.0000000000041	head-tail adaptor Ad1	connector
UniRef90	UHGV-0183280_17	UniRef90_A0A2X2UUR2	204.0	0	AraC family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0183280_17	1408437.JNJN01000050_gene1049	121.0	3.23e-34	Phage gp6-like head-tail connector protein	N/A
NCBIFam	UHGV-0183280_17	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0183280_17	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0183280_18	phrog_25	51.0	0.000000000000026	head closure Hc1	connector
UniRef90	UHGV-0183280_18	UniRef90_A0A2X2UDY7	159.0	0	Head-tail adaptor	N/A
eggNOG-mapper	UHGV-0183280_18	877414.ATWA01000019_gene2042	106.0	1.67e-28	Phage head-tail joining protein	N/A
Pfam	UHGV-0183280_18	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0183280_18	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0183280_18	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0183280_18	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0183280_19	phrog_5	52.4	0.000000000000015	tail completion or Neck1 protein	connector
UniRef90	UHGV-0183280_19	UniRef90_A0A174U4X0	224.0	0	Prophage pi2 protein 37	N/A
eggNOG-mapper	UHGV-0183280_19	411473.RUMCAL_01154	153.0	0	N/A	N/A
Pfam	UHGV-0183280_19	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0183280_19	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
UniRef90	UHGV-0183280_20	UniRef90_A0A174U630	204.0	0	Phage-like protein	N/A
eggNOG-mapper	UHGV-0183280_20	1235793.C809_04390	142.0	1.45034e-42	N/A	N/A
structural_annotation	UHGV-0183280_20	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0183280_21	phrog_88	174.5	0	major tail protein	tail
UniRef90	UHGV-0183280_21	UniRef90_A0A2X2WSP4	281.0	0	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0183280_21	663278.Ethha_1843	262.0	0	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0183280_21	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0183280_21	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
KOfam	UHGV-0183280_22	K17080	62.9	2e-18	PHB1; prohibitin 1	N/A
PHROG	UHGV-0183280_22	phrog_200	123.8	1.4e-36	lipoprotein	other
UniRef90	UHGV-0183280_22	UniRef90_A0A2T3FUV4	379.0	0	PHB domain-containing protein	N/A
eggNOG-mapper	UHGV-0183280_22	1458462.JNLK01000001_gene850	194.0	0	prohibitin homologues	N/A
Pfam	UHGV-0183280_22	PF01145	N/A	N/A	SPFH domain / Band 7 family	Band_7
COG	UHGV-0183280_22	COG0330	N/A	N/A	Regulator of protease activity HflC, stomatin/prohibitin superfamily	N/A
structural_annotation	UHGV-0183280_22	PF01145,MF_01562,NF008181,COG0330	N/A	N/A	N/A	N/A
PHROG	UHGV-0183280_23	phrog_709	110.2	1.3e-32	N/A	unknown function
eggNOG-mapper	UHGV-0183280_23	1235800.C819_02929	189.0	0	N/A	N/A
structural_annotation	UHGV-0183280_23	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0183280_24	phrog_3033	75.4	5.4e-22	N/A	unknown function
UniRef90	UHGV-0183280_24	UniRef90_A0A174UN01	97.4	1.06e-25	Phage-like protein	N/A
eggNOG-mapper	UHGV-0183280_24	1235790.C805_01800	86.3	4.87e-22	N/A	N/A
KOfam	UHGV-0183280_25	K04763	194.9	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0183280_25	phrog_1	143.3	2.29953e-42	integrase	integration and excision
UniRef90	UHGV-0183280_25	UniRef90_A0A1C6E0B2	685.0	0	Tyrosine recombinase XerC	N/A
eggNOG-mapper	UHGV-0183280_25	97139.C824_01961	398.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0183280_25	PF02899	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
Pfam	UHGV-0183280_25	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0183280_25	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0183280_25	PF00589,PF13495,MF_01808,TIGR02225,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0183280_26	K04763	95.7	6e-28	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0183280_26	phrog_1	75.3	9.4e-22	integrase	integration and excision
UniRef90	UHGV-0183280_26	UniRef90_A0A1C6E014	646.0	0	Tyrosine recombinase XerD	N/A
eggNOG-mapper	UHGV-0183280_26	411468.CLOSCI_01082	290.0	0	Phage integrase family	N/A
Pfam	UHGV-0183280_26	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0183280_26	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0183280_26	PF00589,MF_01807,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0183280_27	K04763	119.5	2.2e-38	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0183280_27	phrog_1	95.7	9.9e-30	integrase	integration and excision
UniRef90	UHGV-0183280_27	UniRef90_A0A1C6E0V6	1487.0	0	Tyrosine recombinase XerC	N/A
eggNOG-mapper	UHGV-0183280_27	411468.CLOSCI_01083	310.0	0	Phage integrase family	N/A
Pfam	UHGV-0183280_27	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0183280_27	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
KOfam	UHGV-0183280_28	K20254	93.1	1.6e-27	PLIN4; perilipin-4	N/A
PHROG	UHGV-0183280_28	phrog_1272	666.2	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0183280_28	1410624.JNKK01000017_gene1985	503.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0183280_28	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
Pfam	UHGV-0183280_28	PF01442	N/A	N/A	Apolipoprotein A1/A4/E domain	Apolipoprotein
Pfam	UHGV-0183280_28	PF04513	N/A	N/A	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
NCBIFam	UHGV-0183280_28	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0183280_28	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-0183280_29	phrog_33	72.2	1.2e-20	distal tail protein Dit	tail
UniRef90	UHGV-0183280_29	UniRef90_A0A2X2UUQ3	397.0	0	Phage putative tail component	N/A
eggNOG-mapper	UHGV-0183280_29	1160721.RBI_I01575	160.0	0	Phage tail protein	N/A
COG	UHGV-0183280_29	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0183280_29	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0183280_30	phrog_1067	253.8	0	minor head protein	head and packaging
UniRef90	UHGV-0183280_30	UniRef90_UPI001961C393	771.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0183280_30	1160721.RBI_I01574	255.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0183280_30	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0183280_30	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0183280_30	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0183280_30	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0183280_31	PF10651,COG3470	N/A	N/A	N/A	N/A
PHROG	UHGV-0183280_32	phrog_28673	425.2	0	tail protein	tail
eggNOG-mapper	UHGV-0183280_32	1540090.A0A0A0RS40_9CAUD	325.0	0	N/A	N/A
PHROG	UHGV-0183280_34	phrog_199	105.1	7e-31	holin	lysis
UniRef90	UHGV-0183280_34	UniRef90_UPI001B195EEE	224.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-0183280_34	1121115.AXVN01000059_gene432	221.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0183280_34	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0183280_34	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0183280_34	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0183280_34	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
UniRef90	UHGV-0183280_35	UniRef90_A0A416CM10	215.0	0	LysM peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0183280_35	1216932.CM240_0631	85.1	2.53e-16	Ami_2	N/A
Pfam	UHGV-0183280_35	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
Pfam	UHGV-0183280_35	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0183280_35	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0183280_35	PF18341,PF01476,MF_02014,NF010723,TIGR04457,COG4991,COG5004	N/A	N/A	N/A	N/A
KOfam	UHGV-0183280_36	K01447	57.8	2.4e-16	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0183280_36	phrog_20388	290.5	0	endolysin	lysis
UniRef90	UHGV-0183280_36	UniRef90_A0A417D2M0	479.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase	N/A
eggNOG-mapper	UHGV-0183280_36	1408311.JNJM01000036_gene43	484.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0183280_36	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0183280_36	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
COG	UHGV-0183280_36	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-0183280_36	PF01832,PF01510,MF_04111,NF038016,NF008758,COG1705,COG3023	N/A	N/A	N/A	N/A
KOfam	UHGV-0183280_37	K06400	323.2	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0183280_37	phrog_95	348.3	0	integrase	integration and excision
UniRef90	UHGV-0183280_37	UniRef90_A0A2X2UJ52	905.0	0	Resolvase domain	N/A
eggNOG-mapper	UHGV-0183280_37	478749.BRYFOR_07670	692.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0183280_37	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0183280_37	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0183280_37	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0183280_37	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
KOfam	UHGV-0183280_38	K06400	287.2	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0183280_38	phrog_95	318.0	0	integrase	integration and excision
UniRef90	UHGV-0183280_38	UniRef90_A0A2X2UXQ6	1092.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-0183280_38	478749.BRYFOR_07671	830.0	0	recombinase activity	N/A
Pfam	UHGV-0183280_38	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0183280_38	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-0183280_38	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0183280_38	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0183280_40	K19167	120.2	2.5e-35	abiQ; protein AbiQ	N/A
PHROG	UHGV-0183280_40	phrog_9764	124.7	6.8e-37	N/A	unknown function
UniRef90	UHGV-0183280_40	UniRef90_A0A173T0H6	220.0	0	Type III toxin-antitoxin system ToxN/AbiQ family toxin	N/A
eggNOG-mapper	UHGV-0183280_40	665950.HMPREF1025_02193	212.0	0	Toxin ToxN, type III toxin-antitoxin system	N/A
PADLOC	UHGV-0183280_40	AbiQ	137.1	1.90001e-40	AbiQ	Abi
Pfam	UHGV-0183280_40	PF13958	N/A	N/A	Toxin ToxN, type III toxin-antitoxin system	ToxN_toxin
structural_annotation	UHGV-0183280_40	PF13958	N/A	N/A	N/A	N/A