UHGV-0183316 (vOTU-109240)

Viral Genome: UHGV-0183316

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0183316
vOTU ID	vOTU-109240
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_597551
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.72 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9754
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.85
Jumbo phage	No

Genome content
Genome length (bp)	21,476
GC content	56.01%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	37
CDS density	91%
Average CDS length (bps)	527.43
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 54.72)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0183316_1	phrog_20532	53.1	0.000000000000005	N/A	unknown function
eggNOG-mapper	UHGV-0183316_1	411470.RUMGNA_02189	51.6	0.00000905	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
Pfam	UHGV-0183316_1	PF00132	N/A	N/A	Bacterial transferase hexapeptide (six repeats)	Hexapep
COG	UHGV-0183316_1	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
UniRef90	UHGV-0183316_2	UniRef90_R6DRH1	81.3	7.98e-16	Putative TnpX site-specific recombinase	N/A
eggNOG-mapper	UHGV-0183316_2	742740.HMPREF9474_00056	113.0	1.02e-28	N/A	N/A
structural_annotation	UHGV-0183316_2	COG4068	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0183316_3	PF10723	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0183316_5	742740.HMPREF9474_00056	87.0	2.15e-17	N/A	N/A
Pfam	UHGV-0183316_5	PF18912	N/A	N/A	Double zinc ribbon domain	DZR_2
PHROG	UHGV-0183316_6	phrog_3754	101.0	9.8e-30	N/A	unknown function
eggNOG-mapper	UHGV-0183316_6	476272.RUMHYD_01764	167.0	0	N/A	N/A
PHROG	UHGV-0183316_7	phrog_21718	116.6	1.6e-34	N/A	unknown function
eggNOG-mapper	UHGV-0183316_7	397290.C810_05210	94.4	2.64e-22	N/A	N/A
PHROG	UHGV-0183316_8	phrog_22984	67.6	3.8e-20	N/A	unknown function
PHROG	UHGV-0183316_9	phrog_16490	121.1	5.5e-36	N/A	unknown function
eggNOG-mapper	UHGV-0183316_9	476272.RUMHYD_01770	115.0	1.87e-28	N/A	N/A
PHROG	UHGV-0183316_10	phrog_20016	169.1	0	N/A	unknown function
UniRef90	UHGV-0183316_10	UniRef90_A0A285PT46	191.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0183316_10	1226322.HMPREF1545_00077	158.0	0	N/A	N/A
structural_annotation	UHGV-0183316_10	PF18573,NF033147	N/A	N/A	N/A	N/A
KOfam	UHGV-0183316_13	K14059	192.5	0	int; integrase	N/A
PHROG	UHGV-0183316_13	phrog_1	163.0	0	integrase	integration and excision
UniRef90	UHGV-0183316_13	UniRef90_A0A6N2R566	141.0	1.28e-34	Tyrosine recombinase XerD	N/A
eggNOG-mapper	UHGV-0183316_13	428125.CLOLEP_01837	124.0	2.95e-29	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0183316_13	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0183316_13	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0183316_13	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0183316_13	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0183316_16	K22300	64.2	2.9e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0183316_16	phrog_8	53.7	0.0000000000000043	transcriptional regulator	transcription regulation
UniRef90	UHGV-0183316_16	UniRef90_A0A1Q6RKG1	122.0	3.36e-33	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0183316_16	748224.HMPREF9436_01444	110.0	2.96e-29	N/A	N/A
PADLOC	UHGV-0183316_16	retron_type_VI_hth_cluster2_1	43.6	0.0000000000065	N/A	Retron
Pfam	UHGV-0183316_16	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0183316_16	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0183316_16	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
Pfam	UHGV-0183316_21	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0183316_21	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
PHROG	UHGV-0183316_22	phrog_253	136.1	1.90001e-40	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0183316_22	UniRef90_A0A2X0YV32	94.0	2.33e-21	Siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0183316_22	447909.A6M981_9VIRU	75.9	0.0000000000000084	Siphovirus Gp157	N/A
Pfam	UHGV-0183316_22	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0183316_22	PF05565,NF002139	N/A	N/A	N/A	N/A
PHROG	UHGV-0183316_23	phrog_2872	201.9	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0183316_23	UniRef90_A0A1C5TE45	297.0	0	AAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0183316_23	1304866.K413DRAFT_0827	286.0	0	AAA domain	N/A
Pfam	UHGV-0183316_23	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0183316_23	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0183316_24	phrog_18107	132.6	2.9e-39	N/A	unknown function
UniRef90	UHGV-0183316_24	UniRef90_UPI00058F46CC	118.0	3.05e-30	N/A	N/A
eggNOG-mapper	UHGV-0183316_24	927704.SELR_18470	129.0	3.38e-35	N/A	N/A
structural_annotation	UHGV-0183316_24	PF05037	N/A	N/A	N/A	N/A
KOfam	UHGV-0183316_25	K02316	80.4	2.5e-23	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0183316_25	phrog_11992	112.9	1.5e-33	N/A	unknown function
UniRef90	UHGV-0183316_25	UniRef90_A0A316RX24	103.0	8.94e-25	ZnF_CHCC domain-containing protein	N/A
eggNOG-mapper	UHGV-0183316_25	1121296.JONJ01000012_gene366	85.1	4.69e-18	CHC2 zinc finger	N/A
PADLOC	UHGV-0183316_25	drt-UG29	63.7	1.8e-18	DRT	DRT
Pfam	UHGV-0183316_25	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-0183316_25	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0183316_25	PF01807	N/A	N/A	N/A	N/A
PHROG	UHGV-0183316_26	phrog_8841	481.5	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0183316_26	UniRef90_A0A1I0KAC8	458.0	0	N/A	N/A
eggNOG-mapper	UHGV-0183316_26	1232453.BAIF02000010_gene3340	419.0	0	N/A	N/A
Pfam	UHGV-0183316_26	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0183316_26	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0183316_26	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0183316_26	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
KOfam	UHGV-0183316_27	K17677	404.2	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0183316_27	phrog_16	265.7	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0183316_27	UniRef90_A0A2U1BEG6	625.0	0	Superfamily II DNA or RNA helicase	N/A
eggNOG-mapper	UHGV-0183316_27	742738.HMPREF9460_02499	579.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-0183316_27	mREase_IV_00005	109.1	4.1e-32	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0183316_27	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0183316_27	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0183316_27	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0183316_27	PF04851,PF16203,MF_01489,TIGR04095,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0183316_28	phrog_824	118.6	3.3e-35	N/A	unknown function
UniRef90	UHGV-0183316_28	UniRef90_A0A011VZ13	149.0	3.64338e-44	Nuclease	N/A
eggNOG-mapper	UHGV-0183316_28	1291050.JAGE01000001_gene480	103.0	1.69e-26	VRR_NUC	N/A
Pfam	UHGV-0183316_28	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0183316_28	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-0183316_33	phrog_20532	45.1	0.00000000000081	N/A	unknown function
Pfam	UHGV-0183316_33	PF00132	N/A	N/A	Bacterial transferase hexapeptide (six repeats)	Hexapep
structural_annotation	UHGV-0183316_33	MF_00387,TIGR03992,COG2171	N/A	N/A	N/A	N/A
PHROG	UHGV-0183316_35	phrog_6721	269.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0183316_35	537007.BLAHAN_05521	245.0	0	N/A	N/A
structural_annotation	UHGV-0183316_35	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-0183316_36	phrog_36	51.1	0.000000000000027	transcriptional regulator	transcription regulation
COG	UHGV-0183316_36	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0183316_36	PF05263,TIGR01636	N/A	N/A	N/A	N/A