UHGV-0183684 (vOTU-067308)

Viral Genome: UHGV-0183684

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0183684
vOTU ID	vOTU-067308
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMEA1906523_a1_ct162478_vs2@Siphoviridae__sp._ctM7w2
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.35 (High-quality)
Trimmed provirus	Yes
CheckV viral markers	12
CheckV host markers	4
Recoded stop codon	No

Viral Content
geNomad score	0.9741
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.13
Jumbo phage	No

Genome content
Genome length (bp)	36,260
GC content	50.49%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	43
CDS density	95%
Average CDS length (bps)	798.28
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 91.35)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0183684_1	K22300	48.7	0.00000000000015	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0183684_1	phrog_3	51.9	0.000000000000032	transcriptional repressor	transcription regulation
UniRef90	UHGV-0183684_1	UniRef90_UPI001F201451	79.3	5.81e-18	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0183684_1	1321782.HMPREF1986_02244	62.8	0.00000000000405	Helix-turn-helix domain	N/A
Pfam	UHGV-0183684_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0183684_1	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0183684_1	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0183684_2	phrog_26314	117.8	2.6e-35	N/A	unknown function
KOfam	UHGV-0183684_3	K15352	49.1	0.000000000000048	pipB2; secreted effector protein PipB2	N/A
PHROG	UHGV-0183684_3	phrog_9562	78.6	2.8e-23	N/A	unknown function
UniRef90	UHGV-0183684_3	UniRef90_UPI001A9BFF4A	131.0	5.19e-35	pentapeptide repeat-containing protein	N/A
eggNOG-mapper	UHGV-0183684_3	1232443.BAIA02000078_gene49	115.0	1.05e-29	Pentapeptide repeat protein	N/A
Pfam	UHGV-0183684_3	PF00805	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide
Pfam	UHGV-0183684_3	PF19062	N/A	N/A	N/A	DUF5758
COG	UHGV-0183684_3	COG1357	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0183684_3	PF19062	N/A	N/A	N/A	N/A
PHROG	UHGV-0183684_4	phrog_33952	190.8	0	N/A	unknown function
PHROG	UHGV-0183684_8	phrog_253	131.8	3.9e-39	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0183684_8	UniRef90_R6J0Q7	287.0	0	N/A	N/A
eggNOG-mapper	UHGV-0183684_8	1227360.C176_12583	86.3	3.36e-19	Siphovirus Gp157	N/A
Pfam	UHGV-0183684_8	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0183684_8	PF05565,NF002139	N/A	N/A	N/A	N/A
PHROG	UHGV-0183684_9	phrog_7838	226.1	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0183684_9	UniRef90_A0A8D9UGW3	198.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0183684_9	742767.HMPREF9456_02052	167.0	0	N/A	N/A
structural_annotation	UHGV-0183684_9	PF04098,TIGR00607,COG5055	N/A	N/A	N/A	N/A
PHROG	UHGV-0183684_10	phrog_72	71.7	9.9e-21	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0183684_10	UniRef90_UPI001F3F3E5C	112.0	2.95e-28	recombination protein NinB	N/A
eggNOG-mapper	UHGV-0183684_10	445972.ANACOL_01825	96.3	1.07e-22	N/A	N/A
structural_annotation	UHGV-0183684_10	PF05772	N/A	N/A	N/A	N/A
KOfam	UHGV-0183684_11	K03111	138.7	6.29996e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0183684_11	phrog_44	141.3	5.59959e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0183684_11	UniRef90_R6JMM3	253.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0183684_11	718252.FP2_06770	155.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0183684_11	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0183684_11	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0183684_11	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0183684_11	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0183684_11	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0183684_12	phrog_2514	104.4	1e-30	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0183684_12	1461580.CCAS010000067_gene4022	121.0	1.55e-30	DnaD domain protein	N/A
COG	UHGV-0183684_12	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0183684_12	PF12793,NF033788,COG0640	N/A	N/A	N/A	N/A
KOfam	UHGV-0183684_14	K01160	56.4	7.9e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0183684_14	phrog_140	128.1	4.8e-38	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0183684_14	UniRef90_A0A0L0WED4	126.0	1.02e-34	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-0183684_14	12348.Q8SDG7_BPLLH	122.0	6.47e-34	magnesium ion binding	N/A
Pfam	UHGV-0183684_14	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
structural_annotation	UHGV-0183684_14	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0183684_16	phrog_7704	44.9	0.000000000002	N/A	unknown function
Pfam	UHGV-0183684_16	PF04448	N/A	N/A	N/A	DUF551
COG	UHGV-0183684_16	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0183684_17	PF09871,COG4014	N/A	N/A	N/A	N/A
PHROG	UHGV-0183684_19	phrog_355	62.0	8.2e-18	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0183684_19	UniRef90_UPI001E585BFA	178.0	0	N/A	N/A
eggNOG-mapper	UHGV-0183684_19	97138.C820_00250	127.0	8.58e-37	N/A	N/A
Pfam	UHGV-0183684_19	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0183684_19	PF14359,COG3613	N/A	N/A	N/A	N/A
KOfam	UHGV-0183684_20	K01520	138.9	3.89995e-41	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0183684_20	phrog_135	116.9	1.4e-34	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0183684_20	UniRef90_R6ILQ3	256.0	0	Deoxyuridine 5'-triphosphate nucleotidohydrolase	N/A
eggNOG-mapper	UHGV-0183684_20	1282887.AUJG01000016_gene1113	145.0	6.4796e-42	N/A	N/A
Pfam	UHGV-0183684_20	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-0183684_20	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-0183684_20	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0183684_20	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
PHROG	UHGV-0183684_22	phrog_1206	45.7	0.000000000000014	terminase small subunit	head and packaging
KOfam	UHGV-0183684_23	K06909	154.8	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0183684_23	phrog_979	163.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0183684_23	UniRef90_R6IPR7	979.0	0	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0183684_23	1410650.JHWL01000003_gene2834	528.0	0	N/A	N/A
Pfam	UHGV-0183684_23	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0183684_23	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0183684_23	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0183684_24	phrog_156	293.6	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0183684_24	1410650.JHWL01000003_gene2833	500.0	0	N/A	N/A
structural_annotation	UHGV-0183684_24	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-0183684_25	K07584	44.2	0.0000000000034	N/A	N/A
PHROG	UHGV-0183684_25	phrog_4478	47.6	0.00000000000021	peptidase	other
Pfam	UHGV-0183684_25	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
structural_annotation	UHGV-0183684_25	PF04327,NF011124,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0183684_26	phrog_13908	382.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0183684_26	1410650.JHWL01000003_gene2831	108.0	1.41e-24	N/A	N/A
PHROG	UHGV-0183684_27	phrog_1357	253.0	0	major head protein	head and packaging
UniRef90	UHGV-0183684_27	UniRef90_A0A1I0BH03	317.0	0	Major capsid protein, N4-gp56 family	N/A
eggNOG-mapper	UHGV-0183684_27	748224.HMPREF9436_02545	271.0	0	N/A	N/A
Pfam	UHGV-0183684_27	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0183684_27	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0183684_27	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0183684_29	phrog_12105	148.2	2.38221e-44	N/A	unknown function
eggNOG-mapper	UHGV-0183684_29	1519439.JPJG01000060_gene1891	57.0	0.0000000102	N/A	N/A
PHROG	UHGV-0183684_30	phrog_511	417.1	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0183684_30	1410650.JHWL01000003_gene2827	246.0	0	N/A	N/A
structural_annotation	UHGV-0183684_30	PF11134,MF_01605,NF038128,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0183684_34	phrog_22978	2793.5	0	N/A	unknown function
UniRef90	UHGV-0183684_34	UniRef90_R6ILN9	4908.0	0	MuF_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0183684_34	1410650.JHWL01000003_gene2814	95.1	5.18e-16	N/A	N/A
Pfam	UHGV-0183684_34	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
KOfam	UHGV-0183684_35	K24248	64.1	1.4e-18	EMID1; EMI domain-containing protein 1	N/A
PHROG	UHGV-0183684_35	phrog_5073	50.3	0.0000000000000072	tail fiber protein	tail
UniRef90	UHGV-0183684_35	UniRef90_R6ISY1	371.0	0	Extracellular nuclease	N/A
eggNOG-mapper	UHGV-0183684_35	2754.EH55_03895	60.5	0.0000009	alpha-ribazole phosphatase activity	N/A
Pfam	UHGV-0183684_35	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0183684_35	COG0406	N/A	N/A	Broad specificity phosphatase PhoE	N/A
UniRef90	UHGV-0183684_36	UniRef90_R6J123	115.0	1.51e-32	ATP synthase B chain	N/A
PHROG	UHGV-0183684_37	phrog_4105	77.0	1.6e-22	N/A	unknown function
eggNOG-mapper	UHGV-0183684_37	397288.C806_00056	89.7	1.19e-21	N/A	N/A
PHROG	UHGV-0183684_38	phrog_263	93.5	1.2e-27	holin	lysis
UniRef90	UHGV-0183684_38	UniRef90_R6JQI4	151.0	0	Holin SPP1 family	N/A
eggNOG-mapper	UHGV-0183684_38	1121344.JHZO01000003_gene952	78.2	7.76e-18	SPP1 phage holin	N/A
Pfam	UHGV-0183684_38	PF04688	N/A	N/A	SPP1 phage holin	Holin_SPP1
NCBIFam	UHGV-0183684_38	TIGR01592.1	N/A	N/A	phage holin	N/A
structural_annotation	UHGV-0183684_38	PF04688	N/A	N/A	N/A	N/A
UniRef90	UHGV-0183684_39	UniRef90_R6J3S0	619.0	0	Peptidase_C39_2 domain-containing protein	N/A
Pfam	UHGV-0183684_39	PF13529	N/A	N/A	Peptidase_C39 like family	Peptidase_C39_2
structural_annotation	UHGV-0183684_39	PF11814,NF033920,COG4990	N/A	N/A	N/A	N/A
PHROG	UHGV-0183684_40	phrog_9151	153.1	1.4013e-45	HicB-like antitoxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0183684_40	UniRef90_UPI001E454195	140.0	7.08e-40	type II toxin-antitoxin system HicB family antitoxin	N/A
eggNOG-mapper	UHGV-0183684_40	33035.JPJF01000090_gene99	128.0	1.29e-35	HicB family	N/A
Pfam	UHGV-0183684_40	PF05534	N/A	N/A	HicB family	HicB
COG	UHGV-0183684_40	COG4226	N/A	N/A	Predicted nuclease of the RNAse H fold, HicB family	N/A
structural_annotation	UHGV-0183684_40	PF21748,PF07878,NF041264,COG4226	N/A	N/A	N/A	N/A
KOfam	UHGV-0183684_43	K06334	134.7	5.9e-40	cotJC; spore coat protein JC	N/A
PHROG	UHGV-0183684_43	phrog_7573	122.7	2.6e-36	N/A	unknown function
UniRef90	UHGV-0183684_43	UniRef90_A0A316R679	206.0	0	Rubrerythrin family protein	N/A
eggNOG-mapper	UHGV-0183684_43	742738.HMPREF9460_01512	169.0	0	Manganese containing catalase	N/A
Pfam	UHGV-0183684_43	PF05067	N/A	N/A	Manganese containing catalase	Mn_catalase
COG	UHGV-0183684_43	COG3546	N/A	N/A	Mn-containing catalase (includes spore coat protein CotJC)	N/A