UHGV-0184283 (vOTU-017924)

Viral Genome: UHGV-0184283

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0184283
vOTU ID	vOTU-017924
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMEA2737857_b1_ct18_vs2@Podoviridae__sp._ct9il18@linear
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.34 (Medium-quality)
Trimmed provirus	Yes
CheckV viral markers	16
CheckV host markers	5
Recoded stop codon	No

Viral Content
geNomad score	0.9725
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.07
Jumbo phage	No

Genome content
Genome length (bp)	41,740
GC content	42.41%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	67
CDS density	93%
Average CDS length (bps)	581.42
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 88.34)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0184283_2	K14059	282.9	0	int; integrase	N/A
PHROG	UHGV-0184283_2	phrog_1	230.7	0	integrase	integration and excision
UniRef90	UHGV-0184283_2	UniRef90_G9YK08	345.0	0	Site-specific recombinase, phage integrase family	N/A
eggNOG-mapper	UHGV-0184283_2	861450.HMPREF0080_02017	345.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0184283_2	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0184283_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0184283_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0184283_2	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0184283_3	1005994.GTGU_01419	73.6	6.67e-16	N/A	N/A
structural_annotation	UHGV-0184283_5	PF06114	N/A	N/A	N/A	N/A
KOfam	UHGV-0184283_6	K22299	60.3	4.6e-17	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0184283_6	phrog_8	80.4	3e-23	transcriptional regulator	transcription regulation
UniRef90	UHGV-0184283_6	UniRef90_UPI00047E223F	110.0	1.26e-28	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0184283_6	340099.Teth39_0032	97.1	3.52e-24	PFAM helix-turn-helix domain protein	N/A
PADLOC	UHGV-0184283_6	retron_type_VI_hth_cluster2_1	46.0	0.0000000000012	N/A	Retron
Pfam	UHGV-0184283_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0184283_6	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0184283_6	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0184283_7	K07729	68.0	2e-19	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0184283_7	phrog_8	42.8	0.000000000011	transcriptional regulator	transcription regulation
UniRef90	UHGV-0184283_7	UniRef90_UPI0010FD1F0E	80.1	2.27e-18	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0184283_7	997350.HMPREF9129_1690	69.7	0.00000000000000395	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0184283_7	retron_type_VI_hth_cluster2_1	41.3	0.000000000047	N/A	Retron
Pfam	UHGV-0184283_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0184283_7	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0184283_7	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0184283_11	phrog_7338	41.2	0.000000000019	N/A	unknown function
UniRef90	UHGV-0184283_11	UniRef90_A0A1G6KQV8	72.0	0.0000000000000113	DNA binding domain-containing protein, excisionase family	N/A
eggNOG-mapper	UHGV-0184283_11	273068.TTE2123	50.1	0.000000963	Excisionase from transposon Tn916	N/A
structural_annotation	UHGV-0184283_11	PF09035,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0184283_15	phrog_253	115.5	4.3e-34	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0184283_15	UniRef90_UPI001C3A3B51	121.0	2.98e-32	Siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0184283_15	699218.HMPREF0889_0310	121.0	8.9e-33	Siphovirus Gp157	N/A
Pfam	UHGV-0184283_15	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0184283_15	PF05565,NF002139	N/A	N/A	N/A	N/A
PHROG	UHGV-0184283_16	phrog_7792	114.0	1.3e-33	N/A	unknown function
UniRef90	UHGV-0184283_16	UniRef90_UPI001D07B780	167.0	0	RAD52 family DNA repair protein	N/A
eggNOG-mapper	UHGV-0184283_16	1485543.JMME01000021_gene803	91.7	2.22e-20	N/A	N/A
structural_annotation	UHGV-0184283_16	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
PHROG	UHGV-0184283_18	phrog_72	59.6	4.9e-17	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
PHROG	UHGV-0184283_19	phrog_7566	90.7	9.7e-27	N/A	unknown function
eggNOG-mapper	UHGV-0184283_19	1280698.AUJS01000007_gene1020	72.8	0.0000000000000029	N/A	N/A
PHROG	UHGV-0184283_20	phrog_270	97.7	1.7e-28	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0184283_20	UniRef90_UPI0015D10FB3	67.0	0.0000000011	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0184283_20	1273103.NM10_01164	75.9	0.0000000000000263	DnaD domain protein	N/A
COG	UHGV-0184283_20	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0184283_20	PF01978,MF_01819,TIGR01610,COG3355	N/A	N/A	N/A	N/A
PHROG	UHGV-0184283_22	phrog_5070	170.2	0	N/A	unknown function
UniRef90	UHGV-0184283_22	UniRef90_UPI00103291C8	225.0	0	polymer-forming cytoskeletal protein	N/A
eggNOG-mapper	UHGV-0184283_22	478749.BRYFOR_05427	115.0	9.75e-30	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
Pfam	UHGV-0184283_22	PF18836	N/A	N/A	YdcK Beta solenoid repeat	B_solenoid_ydck
COG	UHGV-0184283_22	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
structural_annotation	UHGV-0184283_22	NF040481	N/A	N/A	N/A	N/A
PHROG	UHGV-0184283_24	phrog_1008	97.6	6.9e-30	DNA methyltransferase	other
UniRef90	UHGV-0184283_24	UniRef90_E6X1S7	79.0	0.000000000000575	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0184283_24	521098.Aaci_0567	162.0	4.2039e-45	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0184283_24	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-0184283_28	phrog_190	132.1	2.9e-39	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0184283_28	UniRef90_A0A7X2XHL8	277.0	0	N/A	N/A
eggNOG-mapper	UHGV-0184283_28	1009370.ALO_12696	102.0	4.77e-26	N/A	N/A
Pfam	UHGV-0184283_28	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0184283_28	PF06356,NF033179	N/A	N/A	N/A	N/A
PHROG	UHGV-0184283_29	phrog_8538	64.4	1.2e-18	N/A	unknown function
eggNOG-mapper	UHGV-0184283_29	1009370.ALO_12631	67.4	0.00000000000284	N/A	N/A
PHROG	UHGV-0184283_32	phrog_2999	42.0	0.000000000021	N/A	unknown function
KOfam	UHGV-0184283_38	K03111	145.7	4.90454e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0184283_38	phrog_44	144.9	4.40008e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0184283_38	UniRef90_UPI000F0C363F	271.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0184283_38	1262914.BN533_00181	201.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0184283_38	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0184283_38	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0184283_38	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0184283_38	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0184283_38	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
Pfam	UHGV-0184283_40	PF06056	N/A	N/A	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
structural_annotation	UHGV-0184283_40	PF13384	N/A	N/A	N/A	N/A
PHROG	UHGV-0184283_41	phrog_36	75.7	7.5e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-0184283_41	UniRef90_UPI001032C146	248.0	0	N/A	N/A
eggNOG-mapper	UHGV-0184283_41	742741.HMPREF9475_02386	59.7	0.00000000219	sigma factor activity	N/A
Pfam	UHGV-0184283_41	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-0184283_41	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0184283_41	PF07374,MF_00245,TIGR02980,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0184283_42	phrog_419	77.8	1.9e-22	N/A	unknown function
UniRef90	UHGV-0184283_42	UniRef90_A0A4U9RIR3	113.0	6.86e-31	N/A	N/A
eggNOG-mapper	UHGV-0184283_42	476272.RUMHYD_01760	106.0	7.74e-29	N/A	N/A
structural_annotation	UHGV-0184283_42	PF14083	N/A	N/A	N/A	N/A
PHROG	UHGV-0184283_44	phrog_309	183.3	0	terminase small subunit	head and packaging
UniRef90	UHGV-0184283_44	UniRef90_A0A7X3BWM5	220.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0184283_44	1522092.A0A090DCM3_9CAUD	171.0	0	endonuclease activity	N/A
Pfam	UHGV-0184283_44	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
structural_annotation	UHGV-0184283_44	PF07141	N/A	N/A	N/A	N/A
PHROG	UHGV-0184283_45	phrog_5902	216.1	0	N/A	unknown function
UniRef90	UHGV-0184283_45	UniRef90_UPI001032D579	838.0	0	terminase	N/A
eggNOG-mapper	UHGV-0184283_45	1485543.JMME01000020_gene792	494.0	0	Terminase RNaseH-like domain	N/A
COG	UHGV-0184283_45	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0184283_45	PF03237,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0184283_47	phrog_332	305.3	0	head-tail adaptor	connector
UniRef90	UHGV-0184283_47	UniRef90_UPI0010329B07	893.0	0	portal protein	N/A
eggNOG-mapper	UHGV-0184283_47	2754.EH55_08515	159.0	1.25e-39	Bacteriophage head to tail connecting protein	N/A
Pfam	UHGV-0184283_47	PF12236	N/A	N/A	Bacteriophage head to tail connecting protein	Head-tail_con
structural_annotation	UHGV-0184283_47	PF12236,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0184283_48	phrog_528	41.1	0.000000000018	N/A	unknown function
PHROG	UHGV-0184283_50	phrog_212	88.7	0	major head protein	head and packaging
UniRef90	UHGV-0184283_50	UniRef90_A0A0M3F638	208.0	0	N/A	N/A
eggNOG-mapper	UHGV-0184283_50	82995.CR62_16685	213.0	0	N/A	N/A
Pfam	UHGV-0184283_50	PF20911	N/A	N/A	Major capsid protein GP7	GP7
structural_annotation	UHGV-0184283_50	PF20911,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0184283_53	phrog_394	93.8	1.8e-27	tail protein	tail
structural_annotation	UHGV-0184283_53	PF17212	N/A	N/A	N/A	N/A
PHROG	UHGV-0184283_54	phrog_376	136.7	1.6e-40	tail protein	tail
eggNOG-mapper	UHGV-0184283_54	585503.HMPREF7545_1740	82.8	0.00000000000000858	N/A	N/A
PHROG	UHGV-0184283_55	phrog_376	325.6	0	tail protein	tail
eggNOG-mapper	UHGV-0184283_55	568816.Acin_1828	277.0	0	N/A	N/A
structural_annotation	UHGV-0184283_55	PF04053,PF13157,MF_03056,NF038015,COG2706	N/A	N/A	N/A	N/A
PHROG	UHGV-0184283_59	phrog_9880	421.6	0	N/A	unknown function
UniRef90	UHGV-0184283_59	UniRef90_A0A412X674	1274.0	0	MuF_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0184283_59	1123288.SOV_1c10750	400.0	0	N/A	N/A
Pfam	UHGV-0184283_59	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C
PHROG	UHGV-0184283_61	phrog_1640	42.3	0.000000000011	tail protein	tail
PHROG	UHGV-0184283_63	phrog_2837	48.0	0.00000000000017	tail protein	tail
UniRef90	UHGV-0184283_63	UniRef90_UPI001032F78F	274.0	0	N/A	N/A
eggNOG-mapper	UHGV-0184283_63	1009370.ALO_04638	57.4	0.0000000621	N/A	N/A
Pfam	UHGV-0184283_63	PF14301	N/A	N/A	N/A	DUF4376
structural_annotation	UHGV-0184283_63	PF14301	N/A	N/A	N/A	N/A
PHROG	UHGV-0184283_64	phrog_199	41.7	0.0000000000091	holin	lysis
UniRef90	UHGV-0184283_64	UniRef90_UPI001EDD344B	180.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-0184283_64	1009370.ALO_09224	99.0	9.21e-24	Bacteriophage holin family	N/A
Pfam	UHGV-0184283_64	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
structural_annotation	UHGV-0184283_64	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0184283_65	373903.Hore_18550	92.4	2.82e-21	Peptidoglycan-binding domain 1 protein	N/A
COG	UHGV-0184283_65	COG1376	N/A	N/A	Lipoprotein-anchoring transpeptidase ErfK/SrfK	N/A
structural_annotation	UHGV-0184283_65	PF03734,NF007563,COG1376	N/A	N/A	N/A	N/A
PHROG	UHGV-0184283_66	phrog_3066	42.6	0.0000000000093	toxin of TA system	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0184283_66	UniRef90_G2SM67	129.0	3.38e-37	Toxin/antitoxin system, Toxin component	N/A
eggNOG-mapper	UHGV-0184283_66	1069534.LRC_05410	129.0	5.67e-38	Plasmid maintenance system killer	N/A
COG	UHGV-0184283_66	COG3549	N/A	N/A	Plasmid maintenance system killer protein	N/A
structural_annotation	UHGV-0184283_66	PF05015,TIGR02385,COG3549	N/A	N/A	N/A	N/A
KOfam	UHGV-0184283_67	K18831	113.7	2e-33	higA; HTH-type transcriptional regulator / antitoxin HigA	N/A
PHROG	UHGV-0184283_67	phrog_2439	128.2	4.4e-38	transcriptional regulator	transcription regulation
UniRef90	UHGV-0184283_67	UniRef90_Q0AZN6	465.0	0	Putative plasmid maintenance system antidote protein, XRE family	N/A
eggNOG-mapper	UHGV-0184283_67	335541.Swol_0483	465.0	0	Addiction module antidote protein, HigA	N/A
Pfam	UHGV-0184283_67	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0184283_67	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0184283_67	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-0184283_67	PF12844,MF_00535,TIGR02607,COG3093,COG2856	N/A	N/A	N/A	N/A