UHGV-0186628 (vOTU-069071)

Viral Genome: UHGV-0186628

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0186628
vOTU ID	vOTU-069071
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_593930
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9744
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	11.68
Jumbo phage	No

Genome content
Genome length (bp)	27,967
GC content	35.79%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	39
CDS density	96%
Average CDS length (bps)	689.39
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
dbAPIS	UHGV-0186628_1	APIS008	N/A	N/A	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	N/A
PHROG	UHGV-0186628_2	phrog_335	115.3	5.4e-34	phosphatase	other
UniRef90	UHGV-0186628_2	UniRef90_UPI00067E78B7	164.0	0	macro domain-containing protein	N/A
eggNOG-mapper	UHGV-0186628_2	1416760.AYMS01000039_gene1384	60.1	0.0000000134	Macro domain	N/A
PADLOC	UHGV-0186628_2	darG	71.8	2e-20	N/A	N/A
Pfam	UHGV-0186628_2	PF01661	N/A	N/A	Macro domain	Macro
COG	UHGV-0186628_2	COG2110	N/A	N/A	O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain	N/A
structural_annotation	UHGV-0186628_2	PF20016,MF_01205,NF001666,COG2110	N/A	N/A	N/A	N/A
KOfam	UHGV-0186628_5	K03091	77.8	1.9e-22	sigH; RNA polymerase sporulation-specific sigma factor	N/A
PHROG	UHGV-0186628_5	phrog_351	57.2	1.6e-18	RNA polymerase sigma factor	transcription regulation
UniRef90	UHGV-0186628_5	UniRef90_UPI00110606D0	63.2	0.00000000257	sigma-70 family RNA polymerase sigma factor	N/A
Pfam	UHGV-0186628_5	PF04542	N/A	N/A	Sigma-70 region 2	Sigma70_r2
Pfam	UHGV-0186628_5	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
NCBIFam	UHGV-0186628_5	TIGR02937.1	N/A	N/A	sigma-70 family RNA polymerase sigma factor	N/A
COG	UHGV-0186628_5	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
KOfam	UHGV-0186628_6	K06223	53.3	5.5e-18	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-0186628_6	phrog_56	60.6	1e-29	DNA methyltransferase	other
UniRef90	UHGV-0186628_6	UniRef90_UPI00164C574E	228.0	0	DNA adenine methylase	N/A
eggNOG-mapper	UHGV-0186628_6	1236504.HMPREF2132_01695	143.0	3.23e-37	D12 class N6 adenine-specific DNA methyltransferase	N/A
Pfam	UHGV-0186628_6	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
structural_annotation	UHGV-0186628_6	PF02086,NF008152,COG0338	N/A	N/A	N/A	N/A
UniRef90	UHGV-0186628_7	UniRef90_A0A6H1MM30	72.4	0.000000000000124	DNA packaging protein	N/A
KOfam	UHGV-0186628_8	K06909	141.8	6.30024e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0186628_8	phrog_3717	100.3	1.8e-29	terminase large subunit	head and packaging
UniRef90	UHGV-0186628_8	UniRef90_A0A843GU32	285.0	0	Phage terminase large subunit (Fragment)	N/A
eggNOG-mapper	UHGV-0186628_8	1300150.EMQU_2501	128.0	1.29e-29	Terminase RNAseH like domain	N/A
Pfam	UHGV-0186628_8	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0186628_8	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0186628_8	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0186628_10	phrog_533	61.0	1.9e-23	portal protein	head and packaging
structural_annotation	UHGV-0186628_10	PF05133,MF_04120,TIGR01542,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0186628_12	phrog_581	78.3	3e-23	minor head protein	head and packaging
UniRef90	UHGV-0186628_12	UniRef90_A0A2Z4GUI4	170.0	0	Minor capsid protein 2	N/A
Pfam	UHGV-0186628_12	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0186628_12	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0186628_12	PF06152,TIGR01641	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0186628_14	PF05065,PF13287,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0186628_16	PF07405,TIGR01563	N/A	N/A	N/A	N/A
UniRef90	UHGV-0186628_17	UniRef90_A0A2Z4GU91	75.5	0.00000000000000131	Minor capsid protein	N/A
Pfam	UHGV-0186628_17	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0186628_18	PF09393,PF05561,TIGR02126,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0186628_20	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0186628_21	phrog_34297	86.0	4.1e-26	N/A	unknown function
eggNOG-mapper	UHGV-0186628_21	886379.AEWI01000001_gene1727	85.5	0.0000000000000499	Phage minor structural protein	N/A
Pfam	UHGV-0186628_21	PF05658	N/A	N/A	YadA head domain repeat (2 copies)	YadA_head
COG	UHGV-0186628_21	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0186628_28	phrog_7838	111.1	1.3e-32	exonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0186628_28	742767.HMPREF9456_02052	159.0	0	N/A	N/A
Pfam	UHGV-0186628_28	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
structural_annotation	UHGV-0186628_28	PF04098,TIGR00607,COG5055	N/A	N/A	N/A	N/A
PHROG	UHGV-0186628_29	phrog_253	102.9	3.2e-30	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0186628_29	UniRef90_A0A843GTJ9	142.0	2.61e-40	Siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0186628_29	330396.A8ATE9_9CAUD	57.8	0.0000000334	Siphovirus Gp157	N/A
Pfam	UHGV-0186628_29	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0186628_29	PF05565,NF002139	N/A	N/A	N/A	N/A
KOfam	UHGV-0186628_31	K03111	111.4	1.4e-32	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0186628_31	phrog_44	105.5	6.6e-31	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0186628_31	UniRef90_A0A2V2ET76	102.0	1.97e-25	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0186628_31	1408439.JHXW01000003_gene1637	97.1	3.66e-24	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0186628_31	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0186628_31	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0186628_31	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0186628_31	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0186628_31	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0186628_32	phrog_72	59.5	4.7e-17	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0186628_32	UniRef90_A0A285PU94	99.8	5.46e-23	Recombinase NinB	N/A
eggNOG-mapper	UHGV-0186628_32	1408437.JNJN01000039_gene370	127.0	1.37e-34	N/A	N/A
structural_annotation	UHGV-0186628_32	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0186628_33	phrog_7566	103.0	1.5e-30	N/A	unknown function
eggNOG-mapper	UHGV-0186628_33	411459.RUMOBE_00948	89.7	7.19e-22	N/A	N/A
PHROG	UHGV-0186628_34	phrog_3490	115.5	4e-34	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0186628_34	UniRef90_A0A843HS26	108.0	1.58e-26	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0186628_34	1232453.BAIF02000057_gene1143	107.0	3.01e-27	N/A	N/A
Pfam	UHGV-0186628_34	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-0186628_34	PF03834,NF040956,COG1948	N/A	N/A	N/A	N/A
PHROG	UHGV-0186628_35	phrog_9773	53.7	0.0000000000000022	replication initiation O-like	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0186628_35	1414720.CBYM010000018_gene3019	67.0	0.00000000105	N/A	N/A
KOfam	UHGV-0186628_36	K02315	162.9	0	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0186628_36	phrog_50	139.7	2.29995e-41	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0186628_36	UniRef90_A0A6I2R230	149.0	7.29e-40	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0186628_36	203119.Cthe_2467	139.0	7.99e-37	IstB-like ATP binding protein	N/A
Pfam	UHGV-0186628_36	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0186628_36	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0186628_36	PF01695,MF_01919,NF005992,COG1484	N/A	N/A	N/A	N/A