UHGV-0186990 (vOTU-029668)

Viral Genome: UHGV-0186990

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0186990
vOTU ID	vOTU-029668
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_596346
Associated BioSample	SAMN09781786
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.7 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9821
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.5
Jumbo phage	No

Genome content
Genome length (bp)	31,469
GC content	55.92%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	57
CDS density	93%
Average CDS length (bps)	512.95
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 85.7)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0186990_1	phrog_1066	128.2	3.1e-38	N/A	unknown function
eggNOG-mapper	UHGV-0186990_1	1341151.ASZU01000004_gene265	125.0	1.14e-35	N/A	N/A
structural_annotation	UHGV-0186990_1	PF05119,TIGR01558	N/A	N/A	N/A	N/A
PHROG	UHGV-0186990_2	phrog_9	373.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0186990_2	UniRef90_A0A1Y3W5R1	779.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0186990_2	1203606.HMPREF1526_00981	726.0	0	Terminase	N/A
Pfam	UHGV-0186990_2	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0186990_2	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0186990_2	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0186990_2	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0186990_3	phrog_12	172.0	0	portal protein	head and packaging
UniRef90	UHGV-0186990_3	UniRef90_UPI001898FCCE	500.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0186990_3	626523.GCWU000342_01027	498.0	0	Portal protein	N/A
Pfam	UHGV-0186990_3	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0186990_3	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0186990_3	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0186990_4	K01358	130.7	1.7e-38	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0186990_4	phrog_94	201.7	0	head maturation protease	head and packaging
UniRef90	UHGV-0186990_4	UniRef90_A0A355BJ21	203.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0186990_4	1280689.AUJC01000011_gene1520	187.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0186990_4	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0186990_4	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0186990_4	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0186990_5	phrog_10	189.0	0	major head protein	head and packaging
UniRef90	UHGV-0186990_5	UniRef90_UPI00189AE5FE	425.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0186990_5	1280689.AUJC01000011_gene1521	390.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0186990_5	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0186990_5	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0186990_5	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0186990_5	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0186990_6	phrog_5223	44.3	0.0000000000024	neck protein	connector
UniRef90	UHGV-0186990_6	UniRef90_A0A6N8H2B4	54.3	0.000000171	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0186990_6	931626.Awo_c31020	50.8	0.000000655	N/A	N/A
PHROG	UHGV-0186990_7	phrog_1951	76.5	2.5e-22	head-tail adaptor	connector
UniRef90	UHGV-0186990_7	UniRef90_A0A1F8UNT5	64.7	0.0000000000174	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-0186990_7	1094508.Tsac_2422	53.9	0.0000000568	Phage head-tail joining protein	N/A
Pfam	UHGV-0186990_7	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0186990_7	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0186990_7	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0186990_7	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0186990_8	1487921.DP68_11350	55.1	0.0000000247	N/A	N/A
structural_annotation	UHGV-0186990_8	PF05657	N/A	N/A	N/A	N/A
Pfam	UHGV-0186990_9	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0186990_9	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0186990_10	phrog_88	81.0	1.5e-23	major tail protein	tail
UniRef90	UHGV-0186990_10	UniRef90_S0FUN2	111.0	1.48e-27	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0186990_10	1195236.CTER_5106	111.0	2.49e-28	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0186990_10	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0186990_10	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0186990_10	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0186990_11	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-0186990_12	K10352	41.1	0.0000000000046	MYH9s; myosin heavy chain 9/10/11/14	N/A
PHROG	UHGV-0186990_12	phrog_8462	110.8	1.7e-32	tail length tape measure protein	tail
UniRef90	UHGV-0186990_12	UniRef90_UPI001D1265F0	115.0	3.07e-23	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0186990_12	742740.HMPREF9474_04296	154.0	3.3e-37	Phage tail tape measure protein TP901	N/A
COG	UHGV-0186990_12	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0186990_12	TIGR01760,COG5280	N/A	N/A	N/A	N/A
UniRef90	UHGV-0186990_13	UniRef90_A0A3D0W045	200.0	0	Fibronectin type-III domain-containing protein	N/A
eggNOG-mapper	UHGV-0186990_13	1195236.CTER_5103	106.0	4.61e-21	N/A	N/A
NCBIFam	UHGV-0186990_13	NF033679.1	N/A	N/A	DNRLRE domain-containing protein	N/A
structural_annotation	UHGV-0186990_13	PF02010,PF06848,PF19266,MF_04116,NF033679,NF032891,TIGR01633,TIGR04488,COG3401,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0186990_14	phrog_26795	87.7	3.9e-26	N/A	unknown function
eggNOG-mapper	UHGV-0186990_14	997296.PB1_16154	132.0	8.68e-33	N/A	N/A
structural_annotation	UHGV-0186990_14	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0186990_15	PF18614,MF_00085,NF003082,COG0361	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0186990_16	PF10651,NF038186	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0186990_17	428125.CLOLEP_01433	51.6	0.000000255	N/A	N/A
PHROG	UHGV-0186990_18	phrog_13589	152.5	2.8026e-45	N/A	unknown function
eggNOG-mapper	UHGV-0186990_18	742733.HMPREF9469_05009	205.0	0	N/A	N/A
PHROG	UHGV-0186990_19	phrog_37900	96.0	3.7e-28	N/A	unknown function
UniRef90	UHGV-0186990_19	UniRef90_UPI00051B4A1C	299.0	0	N/A	N/A
eggNOG-mapper	UHGV-0186990_19	1519439.JPJG01000060_gene1894	299.0	0	N/A	N/A
Pfam	UHGV-0186990_19	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-0186990_19	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-0186990_19	PF19789,PF14686,NF040788,COG2512	N/A	N/A	N/A	N/A
PHROG	UHGV-0186990_22	phrog_937	51.9	0.000000000000015	hemolysin	other
eggNOG-mapper	UHGV-0186990_22	693746.OBV_19000	58.9	0.000000000519	N/A	N/A
PHROG	UHGV-0186990_24	phrog_13256	63.2	2.2e-18	N/A	unknown function
eggNOG-mapper	UHGV-0186990_24	1226322.HMPREF1545_00132	73.9	1.81e-16	N/A	N/A
UniRef90	UHGV-0186990_25	UniRef90_A0A358M2Y7	219.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0186990_25	525254.HMPREF0072_1273	207.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
COG	UHGV-0186990_25	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0186990_25	NF033743	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0186990_26	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0186990_28	phrog_16490	55.5	0.0000000000000013	N/A	unknown function
eggNOG-mapper	UHGV-0186990_28	641112.ACOK01000103_gene525	53.1	0.00000545	N/A	N/A
structural_annotation	UHGV-0186990_29	PF18573,NF033147	N/A	N/A	N/A	N/A
UniRef90	UHGV-0186990_30	UniRef90_A0A8F1B662	68.6	0.0000000000225	RNA polymerase sigma factor/Ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0186990_30	1408437.JNJN01000043_gene801	67.0	0.0000000000125	N/A	N/A
KOfam	UHGV-0186990_31	K14059	208.5	0	int; integrase	N/A
PHROG	UHGV-0186990_31	phrog_1	200.6	0	integrase	integration and excision
UniRef90	UHGV-0186990_31	UniRef90_A0A212JT52	262.0	0	Putative Integrase family protein	N/A
eggNOG-mapper	UHGV-0186990_31	1507.HMPREF0262_00307	178.0	0	Phage integrase family	N/A
Pfam	UHGV-0186990_31	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0186990_31	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0186990_31	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0186990_31	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
Pfam	UHGV-0186990_32	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0186990_32	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0186990_33	1121924.ATWH01000011_gene257	94.7	1.07e-18	TM2 domain	N/A
COG	UHGV-0186990_33	COG2314	N/A	N/A	N/A	N/A
PHROG	UHGV-0186990_35	phrog_33519	71.3	1.3e-20	N/A	unknown function
eggNOG-mapper	UHGV-0186990_35	1123405.AUMM01000015_gene2367	205.0	0	N/A	N/A
structural_annotation	UHGV-0186990_35	PF13958,NF010262,COG2337	N/A	N/A	N/A	N/A
KOfam	UHGV-0186990_36	K22300	46.6	0.00000000000062	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0186990_36	phrog_2967	42.4	0.000000000011	transcriptional regulator	transcription regulation
UniRef90	UHGV-0186990_36	UniRef90_A0A844DFR0	123.0	6.36e-34	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0186990_36	748224.HMPREF9436_01444	110.0	2.09e-29	N/A	N/A
Pfam	UHGV-0186990_36	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0186990_36	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0186990_36	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0186990_38	PF03885	N/A	N/A	N/A	N/A
Pfam	UHGV-0186990_43	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
structural_annotation	UHGV-0186990_43	PF12728,NF040990	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0186990_44	642492.Clole_0961	68.2	0.0000000000000307	N/A	N/A
structural_annotation	UHGV-0186990_44	PF12286	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0186990_46	NF041247	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0186990_47	PF05082	N/A	N/A	N/A	N/A
KOfam	UHGV-0186990_50	K00390	98.1	1e-28	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0186990_50	phrog_424	120.1	1.6e-35	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0186990_50	UniRef90_UPI001D087498	418.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0186990_50	1408437.JNJN01000032_gene2312	318.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-0186990_50	BrxP_00001	58.4	1.3e-17	BrxP	BREX
Pfam	UHGV-0186990_50	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0186990_50	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0186990_50	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0186990_53	phrog_5781	56.4	5.3e-16	N/A	unknown function
UniRef90	UHGV-0186990_53	UniRef90_A0A413FXK8	110.0	1.58e-29	N/A	N/A
eggNOG-mapper	UHGV-0186990_53	573061.Clocel_3558	83.2	1.65e-19	N/A	N/A
Pfam	UHGV-0186990_53	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-0186990_53	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-0186990_53	PF14359,MF_03036,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0186990_54	phrog_38832	45.0	0.0000000000012	N/A	unknown function
eggNOG-mapper	UHGV-0186990_54	445972.ANACOL_00165	53.9	0.00000185	N/A	N/A
structural_annotation	UHGV-0186990_54	PF11717,TIGR02450	N/A	N/A	N/A	N/A