UHGV-0187093 (vOTU-029675)

Viral Genome: UHGV-0187093

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0187093
vOTU ID	vOTU-029675
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_595125
Associated BioSample	SAMN09781756
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.28 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	3
Recoded stop codon	No

Viral Content
geNomad score	0.9797
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.28
Jumbo phage	No

Genome content
Genome length (bp)	43,147
GC content	39.88%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	55
CDS density	88%
Average CDS length (bps)	686.56
Total tRNA genes	4
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 56.28)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0187093_1	PF09826,MF_04071,NF008351,COG5276	N/A	N/A	N/A	N/A
PHROG	UHGV-0187093_2	phrog_18190	112.3	8.5e-36	N/A	unknown function
eggNOG-mapper	UHGV-0187093_2	428125.CLOLEP_02759	150.0	5.57e-34	pathogenesis	N/A
Pfam	UHGV-0187093_2	PF07523	N/A	N/A	Bacterial Ig-like domain (group 3)	Big_3
COG	UHGV-0187093_2	COG0683	N/A	N/A	ABC-type branched-chain amino acid transport system, periplasmic component	N/A
PHROG	UHGV-0187093_3	phrog_1194	76.4	3.3e-22	N/A	unknown function
eggNOG-mapper	UHGV-0187093_3	1235790.C805_00088	130.0	4.87e-37	N/A	N/A
Pfam	UHGV-0187093_3	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0187093_3	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0187093_4	phrog_1204	82.2	3.50325e-44	tail protein	tail
eggNOG-mapper	UHGV-0187093_4	742733.HMPREF9469_01814	129.0	2.2e-27	tape measure	N/A
COG	UHGV-0187093_4	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
PHROG	UHGV-0187093_5	phrog_314	89.5	3.6e-26	homing endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0187093_5	UniRef90_UPI000CF201CD	340.0	0	GIY-YIG nuclease family protein	N/A
eggNOG-mapper	UHGV-0187093_5	926559.JoomaDRAFT_1090	100.0	1.69e-22	Intron encoded nuclease repeat motif	N/A
PADLOC	UHGV-0187093_5	HEase_00030	45.2	0.0000000000037	homing endonuclease	RM
Pfam	UHGV-0187093_5	PF01541	N/A	N/A	GIY-YIG catalytic domain	GIY-YIG
Pfam	UHGV-0187093_5	PF07453	N/A	N/A	NUMOD1 domain	NUMOD1
NCBIFam	UHGV-0187093_5	TIGR01453.1	N/A	N/A	group I intron endonuclease	N/A
structural_annotation	UHGV-0187093_5	PF19835,TIGR01453,COG2827	N/A	N/A	N/A	N/A
PHROG	UHGV-0187093_6	phrog_28918	46.4	0.00000000000027	N/A	unknown function
eggNOG-mapper	UHGV-0187093_6	397290.C810_01419	229.0	0	Transglycosylase SLT domain	N/A
COG	UHGV-0187093_6	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
PHROG	UHGV-0187093_8	phrog_36112	150.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0187093_8	476272.RUMHYD_01969	158.0	0	N/A	N/A
structural_annotation	UHGV-0187093_8	PF10666	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0187093_9	476272.RUMHYD_01968	201.0	0	N/A	N/A
structural_annotation	UHGV-0187093_9	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0187093_10	phrog_443	51.6	0.000000000000026	holin	lysis
UniRef90	UHGV-0187093_10	UniRef90_A0A1I5VN65	97.4	3.13e-25	Phage r1t holin	N/A
eggNOG-mapper	UHGV-0187093_10	1469948.JPNB01000002_gene3855	89.7	5.44e-23	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0187093_10	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0187093_10	PF16945	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0187093_11	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0187093_12	phrog_2657	204.4	0	transcriptional regulator	transcription regulation
UniRef90	UHGV-0187093_12	UniRef90_A0A317UDN3	384.0	0	Rha family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0187093_12	33035.JPJF01000043_gene993	296.0	0	N/A	N/A
Pfam	UHGV-0187093_12	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
NCBIFam	UHGV-0187093_12	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-0187093_12	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0187093_12	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
UniRef90	UHGV-0187093_13	UniRef90_UPI001BBD4500	64.3	0.000000000864	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0187093_13	476272.RUMHYD_01963	107.0	5.29e-27	N/A	N/A
AcrCatalog	UHGV-0187093_13	cluster_24841	68.9	1.05e-16	NA	N/A
structural_annotation	UHGV-0187093_14	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
KOfam	UHGV-0187093_15	K04763	242.1	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0187093_15	phrog_1	203.5	0	integrase	integration and excision
UniRef90	UHGV-0187093_15	UniRef90_A0A373N0F6	380.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0187093_15	1235793.C809_01951	249.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0187093_15	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0187093_15	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0187093_15	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0187093_15	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0187093_16	457412.RSAG_04673	77.0	4.26e-18	N/A	N/A
UniRef90	UHGV-0187093_17	UniRef90_A0A417A921	65.5	0.000000000000131	N/A	N/A
Pfam	UHGV-0187093_17	PF12664	N/A	N/A	N/A	DUF3789
KOfam	UHGV-0187093_20	K00986	106.3	3.4e-31	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0187093_20	phrog_1423	149.6	5.60519e-45	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0187093_20	UniRef90_A0A417A9G0	759.0	0	Reverse transcriptase domain-containing protein	N/A
eggNOG-mapper	UHGV-0187093_20	33035.JPJF01000043_gene1000	231.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-0187093_20	icity0040	66.5	5e-19	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-0187093_20	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-0187093_20	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0187093_20	PF00078,MF_04065,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-0187093_21	phrog_17147	193.9	0	N/A	unknown function
UniRef90	UHGV-0187093_21	UniRef90_A0A374JQW7	452.0	0	N/A	N/A
eggNOG-mapper	UHGV-0187093_21	1273103.NM10_03056	64.7	0.0000000525	N/A	N/A
COG	UHGV-0187093_22	COG0683	N/A	N/A	ABC-type branched-chain amino acid transport system, periplasmic component	N/A
structural_annotation	UHGV-0187093_22	PF16255,PF17065,NF011908,COG2755	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0187093_24	397290.C810_01336	74.7	0.00000000000000107	N/A	N/A
eggNOG-mapper	UHGV-0187093_26	1408437.JNJN01000043_gene802	164.0	0	N/A	N/A
PHROG	UHGV-0187093_27	phrog_16490	211.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0187093_27	658655.HMPREF0988_00917	191.0	0	N/A	N/A
PHROG	UHGV-0187093_29	phrog_21718	75.2	7.8e-22	N/A	unknown function
eggNOG-mapper	UHGV-0187093_29	476272.RUMHYD_01952	104.0	4.99e-26	N/A	N/A
UniRef90	UHGV-0187093_30	UniRef90_A0A412EMQ9	152.0	0	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0187093_30	476272.RUMHYD_01951	59.7	0.000000000104	N/A	N/A
structural_annotation	UHGV-0187093_30	PF04545,MF_00674,NF001073,COG1595	N/A	N/A	N/A	N/A
PHROG	UHGV-0187093_31	phrog_937	52.6	0.0000000000000039	hemolysin	other
eggNOG-mapper	UHGV-0187093_32	476272.RUMHYD_01948	115.0	7.08e-32	N/A	N/A
PHROG	UHGV-0187093_33	phrog_29	142.8	2.59941e-42	major head protein	head and packaging
UniRef90	UHGV-0187093_33	UniRef90_R0C0Z5	392.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0187093_33	1232443.BAIA02000078_gene29	279.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0187093_33	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0187093_33	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0187093_34	phrog_909	69.0	6.1e-20	major head protein	head and packaging
eggNOG-mapper	UHGV-0187093_34	1497679.EP56_02915	63.9	0.0000000000105	N/A	N/A
structural_annotation	UHGV-0187093_34	PF02924	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0187093_35	1298920.KI911353_gene2662	56.6	0.000000391	N/A	N/A
structural_annotation	UHGV-0187093_35	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0187093_36	phrog_2468	60.5	1.9e-17	head morphogenesis	head and packaging
UniRef90	UHGV-0187093_36	UniRef90_D7GWD5	184.0	0	Phage Mu protein F like protein	N/A
eggNOG-mapper	UHGV-0187093_36	1329516.JPST01000018_gene2643	59.3	0.000000171	cell adhesion	N/A
Pfam	UHGV-0187093_36	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0187093_36	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0187093_36	PF04233,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-0187093_37	phrog_64	188.3	0	portal protein	head and packaging
UniRef90	UHGV-0187093_37	UniRef90_A0A412EMP0	850.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0187093_37	1298920.KI911353_gene2663	569.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0187093_37	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0187093_37	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0187093_38	phrog_36	63.0	6.1e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0187093_38	UniRef90_A0A373NRA4	139.0	6.52e-40	N/A	N/A
eggNOG-mapper	UHGV-0187093_38	97138.C820_00221	73.9	0.00000000000000734	sigma factor activity	N/A
Pfam	UHGV-0187093_38	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-0187093_38	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0187093_38	PF07374,MF_00674,NF008895,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0187093_39	phrog_38	151.2	7.00649e-45	terminase large subunit	head and packaging
UniRef90	UHGV-0187093_39	UniRef90_A0A7X2P7N6	453.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0187093_39	476272.RUMHYD_01940	830.0	0	TIGRFAM Phage	N/A
COG	UHGV-0187093_39	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0187093_39	PF17289,PF04466,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
PHROG	UHGV-0187093_40	phrog_3886	284.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0187093_40	742733.HMPREF9469_05056	328.0	0	N/A	N/A
KOfam	UHGV-0187093_41	K03744	144.8	7.80523e-43	lemA; LemA protein	N/A
PHROG	UHGV-0187093_41	phrog_1383	155.1	0	virion structural protein	head and packaging
UniRef90	UHGV-0187093_41	UniRef90_A0A414SKJ0	256.0	0	LemA family protein	N/A
eggNOG-mapper	UHGV-0187093_41	742735.HMPREF9467_00879	235.0	0	LemA family	N/A
Pfam	UHGV-0187093_41	PF04011	N/A	N/A	LemA family	LemA
COG	UHGV-0187093_41	COG1704	N/A	N/A	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	N/A
structural_annotation	UHGV-0187093_41	PF04011,NF040966,COG1704	N/A	N/A	N/A	N/A
PHROG	UHGV-0187093_48	phrog_6730	73.0	1.7e-21	N/A	unknown function
eggNOG-mapper	UHGV-0187093_48	1136534.J9PTY8_9CAUD	56.6	0.00000000279	N/A	N/A
structural_annotation	UHGV-0187093_48	PF00684	N/A	N/A	N/A	N/A
PHROG	UHGV-0187093_49	phrog_850	385.2	0	RNA-binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0187093_49	UniRef90_A0A3E5EPH1	893.0	0	N/A	N/A
eggNOG-mapper	UHGV-0187093_49	476272.RUMHYD_01913	565.0	0	N/A	N/A
Pfam	UHGV-0187093_49	PF11443	N/A	N/A	N/A	DUF2828
COG	UHGV-0187093_49	COG2304	N/A	N/A	Secreted protein containing bacterial Ig-like domain and vWFA domain	N/A
structural_annotation	UHGV-0187093_49	PF11443,MF_01340,COG2304	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0187093_52	411473.RUMCAL_02525	114.0	9.03e-32	N/A	N/A
eggNOG-mapper	UHGV-0187093_54	1158610.UC3_00023	55.8	0.000000126	Helix-turn-helix domain of resolvase	N/A
COG	UHGV-0187093_54	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0187093_54	PF00239,NF009949,COG1961	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0187093_55	476272.RUMHYD_01907	130.0	2.3e-35	N/A	N/A