UHGV-0187161 (vOTU-131943)

Viral Genome: UHGV-0187161

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0187161
vOTU ID	vOTU-131943
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN00779630_a1_ct18988_vs1@linear@Siphoviridae__sp._ct9TL1
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.27 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9797
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.61
Jumbo phage	No

Genome content
Genome length (bp)	22,317
GC content	37.89%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	28
CDS density	94%
Average CDS length (bps)	748.50
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 63.27)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0187161_1	phrog_98	70.2	3.1e-20	N/A	unknown function
UniRef90	UHGV-0187161_1	UniRef90_UPI000C75AF45	235.0	0	YopX family protein	N/A
eggNOG-mapper	UHGV-0187161_1	742723.HMPREF9477_00921	175.0	0	YopX protein	N/A
Pfam	UHGV-0187161_1	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0187161_1	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0187161_1	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0187161_2	phrog_6570	40.7	0.000000000033	N/A	unknown function
PHROG	UHGV-0187161_3	phrog_15198	83.7	5.4e-32	N/A	unknown function
UniRef90	UHGV-0187161_3	UniRef90_F3AAR6	180.0	0	N/A	N/A
eggNOG-mapper	UHGV-0187161_3	658655.HMPREF0988_00863	50.8	0.00000979	N/A	N/A
Pfam	UHGV-0187161_3	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-0187161_4	phrog_6568	70.6	1.6e-20	N/A	unknown function
PHROG	UHGV-0187161_5	phrog_11237	85.8	5.4e-25	N/A	unknown function
eggNOG-mapper	UHGV-0187161_5	610130.Closa_0738	99.0	1.2e-24	N/A	N/A
KOfam	UHGV-0187161_6	K07451	44.6	0.0000000000028	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0187161_6	phrog_119	76.1	4.7e-22	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0187161_6	UniRef90_A0A7G5N126	160.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0187161_6	1232452.BAIB02000007_gene1631	103.0	4.03e-27	HNH nucleases	N/A
Pfam	UHGV-0187161_6	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0187161_6	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
UniRef90	UHGV-0187161_7	UniRef90_UPI001E546D43	103.0	8.76e-26	ATP-binding protein	N/A
structural_annotation	UHGV-0187161_7	PF18748,MF_03172,NF038208,COG4639	N/A	N/A	N/A	N/A
PHROG	UHGV-0187161_8	phrog_5110	99.3	2.3e-29	terminase small subunit	head and packaging
UniRef90	UHGV-0187161_8	UniRef90_A0A1C5LZF0	104.0	7.74e-27	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0187161_8	936140.AEOT01000014_gene1353	64.7	0.00000000000381	N/A	N/A
Pfam	UHGV-0187161_8	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0187161_8	PF05119,TIGR01558	N/A	N/A	N/A	N/A
PHROG	UHGV-0187161_9	phrog_9	270.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0187161_9	UniRef90_A0A3E3JY25	952.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0187161_9	1232452.BAIB02000007_gene1629	652.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0187161_9	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0187161_9	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0187161_9	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0187161_9	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0187161_10	phrog_12	66.0	2.6e-19	portal protein	head and packaging
UniRef90	UHGV-0187161_10	UniRef90_A0A3E3JY21	468.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0187161_10	1232452.BAIB02000007_gene1627	444.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0187161_10	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0187161_10	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0187161_10	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0187161_11	phrog_130	182.3	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0187161_11	UniRef90_R5RTD8	370.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0187161_11	658655.HMPREF0988_00912	295.0	0	Phage antirepressor protein KilAC domain	N/A
Pfam	UHGV-0187161_11	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0187161_11	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0187161_11	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0187161_11	PF03374,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-0187161_12	phrog_3896	63.9	1.8e-18	N/A	unknown function
eggNOG-mapper	UHGV-0187161_12	397290.C810_01338	48.1	0.000000517	N/A	N/A
KOfam	UHGV-0187161_13	K07741	105.2	1.6e-30	antB; anti-repressor protein	N/A
PHROG	UHGV-0187161_13	phrog_5817	128.5	6.1e-38	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0187161_13	UniRef90_A0A4R3JPG1	254.0	0	Phage anti-repressor protein	N/A
eggNOG-mapper	UHGV-0187161_13	1567013.A0A0A7RVQ9_9CAUD	202.0	0	AntA/AntB antirepressor	N/A
Pfam	UHGV-0187161_13	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-0187161_13	PF10552	N/A	N/A	ORF6C domain	ORF6C
structural_annotation	UHGV-0187161_13	PF10552,PF08346,NF008573,COG3561	N/A	N/A	N/A	N/A
KOfam	UHGV-0187161_15	K01358	148.4	6.02558e-44	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0187161_15	phrog_94	226.4	0	head maturation protease	head and packaging
UniRef90	UHGV-0187161_15	UniRef90_A0A3E3JYT5	274.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0187161_15	1232452.BAIB02000007_gene1626	275.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0187161_15	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0187161_15	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0187161_15	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0187161_16	phrog_10	68.1	6.3e-20	major head protein	head and packaging
UniRef90	UHGV-0187161_16	UniRef90_A0A3E3JY53	533.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0187161_16	1232452.BAIB02000007_gene1625	535.0	0	Phage capsid family	N/A
COG	UHGV-0187161_16	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0187161_16	PF05065,TIGR01554,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0187161_18	UniRef90_A0A844KCF4	132.0	1.3e-37	Phage head closure protein	N/A
structural_annotation	UHGV-0187161_18	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0187161_19	phrog_78	43.9	0.0000000000045	tail terminator	connector
structural_annotation	UHGV-0187161_19	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0187161_20	phrog_5	54.4	0.0000000000000035	tail completion or Neck1 protein	connector
UniRef90	UHGV-0187161_20	UniRef90_D4M595	131.0	4.14e-37	Phage protein, HK97 gp10 family	N/A
NCBIFam	UHGV-0187161_20	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0187161_20	TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0187161_21	phrog_88	91.9	7.1e-27	major tail protein	tail
UniRef90	UHGV-0187161_21	UniRef90_A0A3E3JYD8	283.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0187161_21	1460635.JCM19038_2812	52.8	0.00000795	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0187161_21	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0187161_21	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0187161_24	phrog_1272	233.4	0	tail length tape measure protein	tail
UniRef90	UHGV-0187161_24	UniRef90_A0A7G5N113	584.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0187161_24	931626.Awo_c35010	388.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0187161_24	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0187161_24	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0187161_24	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
PHROG	UHGV-0187161_25	phrog_33	68.1	2.1e-19	distal tail protein Dit	tail
UniRef90	UHGV-0187161_25	UniRef90_A0A3R6C171	239.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0187161_25	1235798.C817_02569	280.0	0	tail component	N/A
NCBIFam	UHGV-0187161_25	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0187161_25	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0187161_25	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0187161_26	phrog_13289	471.8	0	tail protein	tail
UniRef90	UHGV-0187161_26	UniRef90_UPI000CDA202F	897.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0187161_26	1235798.C817_02568	565.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0187161_26	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-0187161_26	PF21470	N/A	N/A	Minor structural protein 5-like, C-terminal domain	BppU-like_C
NCBIFam	UHGV-0187161_26	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0187161_26	COG2885	N/A	N/A	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	N/A
PHROG	UHGV-0187161_27	phrog_18444	88.6	3.7e-26	N/A	unknown function
UniRef90	UHGV-0187161_27	UniRef90_UPI00156E9A45	81.3	6.07e-19	peptide chain release factor 2	N/A
PHROG	UHGV-0187161_28	phrog_17147	319.4	0	N/A	unknown function
UniRef90	UHGV-0187161_28	UniRef90_A0A1M6MWL0	271.0	0	N-terminal domain of peptidoglycan hydrolase CwlO-containing protein	N/A
eggNOG-mapper	UHGV-0187161_28	478749.BRYFOR_08557	394.0	0	N/A	N/A
structural_annotation	UHGV-0187161_28	PF10651	N/A	N/A	N/A	N/A