UHGV-0187375 (vOTU-097119)

Viral Genome: UHGV-0187375

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0187375
vOTU ID	vOTU-097119
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMEA2580153_a1_ct20756_vs1@Siphoviridae__sp._ctfb71
Associated BioSample	SAMEA2580153
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.04 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9723
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.43
Jumbo phage	No

Genome content
Genome length (bp)	30,987
GC content	51.21%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	50
CDS density	90%
Average CDS length (bps)	559.56
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 62.04)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0187375_1	K04759	370.7	0	feoB; ferrous iron transport protein B	N/A
UniRef90	UHGV-0187375_1	UniRef90_A0A3E2WBG9	827.0	0	Ferrous iron transport protein B	N/A
eggNOG-mapper	UHGV-0187375_1	457421.CBFG_03374	803.0	0	Nucleoside recognition	N/A
Pfam	UHGV-0187375_1	PF02421	N/A	N/A	Ferrous iron transport protein B	FeoB_N
Pfam	UHGV-0187375_1	PF17910	N/A	N/A	FeoB cytosolic helical domain	FeoB_Cyto
Pfam	UHGV-0187375_1	PF07670	N/A	N/A	Nucleoside recognition	Gate
COG	UHGV-0187375_1	COG0370	N/A	N/A	Fe2+ transporter FeoB	N/A
KOfam	UHGV-0187375_2	K06400	258.1	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0187375_2	phrog_95	281.7	0	integrase	integration and excision
UniRef90	UHGV-0187375_2	UniRef90_UPI001F44EB10	901.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0187375_2	1163671.JAGI01000001_gene335	550.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0187375_2	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0187375_2	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0187375_2	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0187375_2	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0187375_3	phrog_4980	180.5	0	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0187375_3	UniRef90_UPI001F193BFE	224.0	0	Ltp family lipoprotein	N/A
eggNOG-mapper	UHGV-0187375_3	411902.CLOBOL_05713	157.0	2.8026e-45	Host cell surface-exposed lipoprotein	N/A
Pfam	UHGV-0187375_3	PF07553	N/A	N/A	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
COG	UHGV-0187375_3	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-0187375_3	PF07553,MF_01114,NF001062,COG2137	N/A	N/A	N/A	N/A
KOfam	UHGV-0187375_4	K22299	56.8	5.6e-16	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0187375_4	phrog_8	43.4	0.0000000000074	transcriptional regulator	transcription regulation
UniRef90	UHGV-0187375_4	UniRef90_A8S0M1	120.0	2.19e-34	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0187375_4	411902.CLOBOL_05712	120.0	3.68e-35	sequence-specific DNA binding	N/A
PADLOC	UHGV-0187375_4	retron_type_VI_hth_cluster2_1	45.4	0.0000000000023	N/A	Retron
Pfam	UHGV-0187375_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0187375_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0187375_4	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0187375_6	K18830	45.6	0.0000000000013	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0187375_6	phrog_8	42.8	0.0000000000054	transcriptional regulator	transcription regulation
UniRef90	UHGV-0187375_6	UniRef90_UPI001183C4FD	139.0	3.15001e-40	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0187375_6	411902.CLOBOL_05710	77.4	1.97e-16	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0187375_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0187375_6	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0187375_6	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-0187375_7	cluster_147956	54.3	0.0000000000000764	NA	N/A
PHROG	UHGV-0187375_9	phrog_21028	48.0	0.00000000000021	N/A	unknown function
eggNOG-mapper	UHGV-0187375_9	411902.CLOBOL_05707	377.0	0	N/A	N/A
structural_annotation	UHGV-0187375_9	PF05354,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0187375_12	UniRef90_UPI001C642544	115.0	3.88e-29	molecular chaperone GrpE	N/A
eggNOG-mapper	UHGV-0187375_12	411902.CLOBOL_05703	235.0	0	N/A	N/A
PHROG	UHGV-0187375_13	phrog_3584	187.1	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0187375_13	610130.Closa_0713	336.0	0	N/A	N/A
structural_annotation	UHGV-0187375_13	PF21578	N/A	N/A	N/A	N/A
KOfam	UHGV-0187375_14	K03469	73.8	3.3e-21	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0187375_14	phrog_531	66.6	4.1e-19	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0187375_14	UniRef90_A8S0K6	278.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0187375_14	411902.CLOBOL_05701	278.0	0	RNase H	N/A
Pfam	UHGV-0187375_14	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0187375_14	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0187375_14	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0187375_16	411902.CLOBOL_05699	315.0	0	N/A	N/A
PHROG	UHGV-0187375_17	phrog_4433	84.2	2e-29	N/A	unknown function
eggNOG-mapper	UHGV-0187375_17	411902.CLOBOL_05698	401.0	0	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0187375_17	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0187375_17	PF12120,NF000318	N/A	N/A	N/A	N/A
PHROG	UHGV-0187375_18	phrog_8470	240.0	0	N/A	unknown function
UniRef90	UHGV-0187375_18	UniRef90_UPI001D07A49A	790.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0187375_18	411902.CLOBOL_05697	1259.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0187375_18	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0187375_18	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0187375_19	phrog_15077	97.9	1.9e-28	N/A	unknown function
UniRef90	UHGV-0187375_19	UniRef90_A0A3A6HZA9	229.0	0	N/A	N/A
eggNOG-mapper	UHGV-0187375_19	411902.CLOBOL_05696	616.0	0	N/A	N/A
structural_annotation	UHGV-0187375_19	PF11300,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0187375_20	phrog_7566	85.1	5e-25	N/A	unknown function
eggNOG-mapper	UHGV-0187375_20	411902.CLOBOL_05695	189.0	0	N/A	N/A
KOfam	UHGV-0187375_23	K03111	130.7	1.8e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0187375_23	phrog_44	132.4	3.3e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0187375_23	UniRef90_A8S0J4	278.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0187375_23	411902.CLOBOL_05692	278.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0187375_23	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0187375_23	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0187375_23	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0187375_23	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0187375_23	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0187375_28	phrog_774	57.0	4.3e-16	N/A	unknown function
eggNOG-mapper	UHGV-0187375_28	397290.C810_05225	127.0	2.87e-37	N/A	N/A
structural_annotation	UHGV-0187375_32	PF13248	N/A	N/A	N/A	N/A
PHROG	UHGV-0187375_34	phrog_36	63.2	5.2e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0187375_34	UniRef90_R6ZAS5	182.0	0	GED domain-containing protein	N/A
eggNOG-mapper	UHGV-0187375_34	411902.CLOBOL_00148	286.0	0	N/A	N/A
structural_annotation	UHGV-0187375_34	PF02996	N/A	N/A	N/A	N/A
KOfam	UHGV-0187375_35	K22014	48.5	0.00000000000015	Nu1, Noh; terminase small subunit / prophage DNA-packing protein	N/A
PHROG	UHGV-0187375_35	phrog_57	108.9	5.8e-32	terminase small subunit	head and packaging
UniRef90	UHGV-0187375_35	UniRef90_A0A3A9BKD1	192.0	0	Protoporphyrinogen oxidase	N/A
eggNOG-mapper	UHGV-0187375_35	537007.BLAHAN_04229	207.0	0	N/A	N/A
COG	UHGV-0187375_35	COG4220	N/A	N/A	Phage DNA packaging protein, Nu1 subunit of terminase	N/A
structural_annotation	UHGV-0187375_35	PF07471,NF040990,COG4220	N/A	N/A	N/A	N/A
KOfam	UHGV-0187375_36	K21512	446.7	0	gpA; terminase, large subunit [EC:3.1.21.4]	N/A
PHROG	UHGV-0187375_36	phrog_15	599.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0187375_36	UniRef90_R6UWI3	1071.0	0	Phage terminase large subunit (GpA)	N/A
eggNOG-mapper	UHGV-0187375_36	411483.FAEPRAA2165_01897	1038.0	0	Phage terminase large subunit (GpA)	N/A
Pfam	UHGV-0187375_36	PF05876	N/A	N/A	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
Pfam	UHGV-0187375_36	PF20454	N/A	N/A	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
COG	UHGV-0187375_36	COG5525	N/A	N/A	Phage terminase, large subunit GpA	N/A
HAMAP	UHGV-0187375_36	MF_04144	N/A	N/A	Terminase, large subunit	N/A
structural_annotation	UHGV-0187375_36	PF05876,PF20454,MF_04144,TIGR01547,COG5525	N/A	N/A	N/A	N/A
PHROG	UHGV-0187375_37	phrog_118	75.4	4.6e-22	head-tail adaptor	connector
UniRef90	UHGV-0187375_37	UniRef90_A0A101WGN2	85.1	7.32e-20	Chemotaxis protein	N/A
eggNOG-mapper	UHGV-0187375_37	1203606.HMPREF1526_01900	98.6	5.8e-26	N/A	N/A
structural_annotation	UHGV-0187375_37	PF19645	N/A	N/A	N/A	N/A
PHROG	UHGV-0187375_38	phrog_21	338.3	0	portal protein	head and packaging
UniRef90	UHGV-0187375_38	UniRef90_A0A3A9CYY4	858.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0187375_38	537007.BLAHAN_04233	839.0	0	Phage portal protein, lambda family	N/A
Pfam	UHGV-0187375_38	PF05136	N/A	N/A	Phage portal protein, lambda family	Phage_portal_2
NCBIFam	UHGV-0187375_38	TIGR01539.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0187375_38	COG5511	N/A	N/A	Phage capsid protein	N/A
structural_annotation	UHGV-0187375_38	PF05136,MF_04135,TIGR01539,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0187375_39	K01358	115.5	6.9e-34	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0187375_39	phrog_94	197.3	0	head maturation protease	head and packaging
UniRef90	UHGV-0187375_39	UniRef90_R6U4M3	624.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0187375_39	411483.FAEPRAA2165_01900	569.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0187375_39	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0187375_39	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0187375_39	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
UniRef90	UHGV-0187375_40	UniRef90_A0A3A9BHC4	154.0	1.4013e-45	Head decoration protein	N/A
eggNOG-mapper	UHGV-0187375_40	445972.ANACOL_03361	99.0	9.51e-25	N/A	N/A
structural_annotation	UHGV-0187375_40	PF02924	N/A	N/A	N/A	N/A
PHROG	UHGV-0187375_41	phrog_29	189.8	0	major head protein	head and packaging
UniRef90	UHGV-0187375_41	UniRef90_A0A3A9D854	624.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0187375_41	411483.FAEPRAA2165_01902	597.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0187375_41	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0187375_41	PF03864,MF_04133,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0187375_42	phrog_3281	74.5	1.2e-21	endonuclease VII	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0187375_42	UniRef90_R6M1E7	55.5	0.00000048	Rho_N domain-containing protein	N/A
structural_annotation	UHGV-0187375_42	PF07498	N/A	N/A	N/A	N/A
PHROG	UHGV-0187375_43	phrog_2551	100.3	1.3e-29	minor tail protein	tail
eggNOG-mapper	UHGV-0187375_43	887325.HMPREF0381_0389	107.0	6.74e-29	ATP-binding sugar transporter from pro-phage	N/A
structural_annotation	UHGV-0187375_43	PF13856	N/A	N/A	N/A	N/A
PHROG	UHGV-0187375_44	phrog_27	63.9	3.6e-18	tail completion or Neck1 protein	connector
UniRef90	UHGV-0187375_44	UniRef90_UPI001C3BDE3A	119.0	1.39e-30	Phage tail protein	N/A
eggNOG-mapper	UHGV-0187375_44	478749.BRYFOR_07541	100.0	8.04e-24	N/A	N/A
structural_annotation	UHGV-0187375_44	PF06763	N/A	N/A	N/A	N/A
PHROG	UHGV-0187375_45	phrog_2581	72.4	4e-21	virion structural protein	head and packaging
structural_annotation	UHGV-0187375_45	PF08873	N/A	N/A	N/A	N/A
PHROG	UHGV-0187375_46	phrog_17039	65.1	8.7e-19	N/A	unknown function
eggNOG-mapper	UHGV-0187375_46	610130.Closa_0845	74.3	1.84e-16	N/A	N/A
KOfam	UHGV-0187375_47	K06907	87.6	1.2e-25	N/A	N/A
PHROG	UHGV-0187375_47	phrog_23	155.0	0	tail sheath	tail
UniRef90	UHGV-0187375_47	UniRef90_A0A7X2TCX8	734.0	0	Phage tail sheath family protein	N/A
eggNOG-mapper	UHGV-0187375_47	610130.Closa_0846	655.0	0	COG3497 Phage tail sheath protein FI	N/A
COG	UHGV-0187375_47	COG3497	N/A	N/A	Phage tail sheath protein FI	N/A
structural_annotation	UHGV-0187375_47	PF10758,TIGR03355,COG3497	N/A	N/A	N/A	N/A
KOfam	UHGV-0187375_48	K06908	126.1	3.5e-37	N/A	N/A
PHROG	UHGV-0187375_48	phrog_55	143.5	7.90332e-43	head closure	connector
UniRef90	UHGV-0187375_48	UniRef90_A0A7X2TC80	291.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0187375_48	610130.Closa_0847	266.0	0	Phage tail tube protein FII	N/A
Pfam	UHGV-0187375_48	PF04985	N/A	N/A	Phage tail tube protein FII	Phage_tube
NCBIFam	UHGV-0187375_48	TIGR01611.1	N/A	N/A	phage major tail tube protein	N/A
COG	UHGV-0187375_48	COG3498	N/A	N/A	Phage tail tube protein FII	N/A
structural_annotation	UHGV-0187375_48	PF04985,TIGR01611,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0187375_49	phrog_3140	47.8	0.00000000000025	tail assembly chaperone	tail
UniRef90	UHGV-0187375_49	UniRef90_A0A7X2NKZ5	133.0	4.49e-38	Phage tail assembly protein	N/A
eggNOG-mapper	UHGV-0187375_49	1235793.C809_02671	55.8	0.0000000366	Phage tail assembly chaperone proteins, E, or 41 or 14	N/A
Pfam	UHGV-0187375_49	PF10109	N/A	N/A	Phage tail assembly chaperone proteins, E, or 41 or 14	Phage_TAC_7
structural_annotation	UHGV-0187375_49	PF10109	N/A	N/A	N/A	N/A