UHGV-0187472 (vOTU-114452)

Viral Genome: UHGV-0187472

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0187472
vOTU ID	vOTU-114452
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN00767973_a1_ct52007_vs1@linear@Myoviridae__sp._ctt1E1
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.5 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9792
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	5.17
Jumbo phage	No

Genome content
Genome length (bp)	26,115
GC content	58.15%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	27
CDS density	92%
Average CDS length (bps)	894.44
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 82.5)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0187472_1	742738.HMPREF9460_02022	58.5	0.000000000152	Transposase	N/A
COG	UHGV-0187472_1	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
PHROG	UHGV-0187472_3	phrog_373	94.1	1.9e-27	anti-repressor	transcription regulation
UniRef90	UHGV-0187472_3	UniRef90_UPI0005A8A2DB	139.0	2.69e-37	Rha family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0187472_3	1308866.J416_09319	124.0	3.2e-32	Phage regulatory protein	N/A
Pfam	UHGV-0187472_3	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
NCBIFam	UHGV-0187472_3	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-0187472_3	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
UniRef90	UHGV-0187472_4	UniRef90_A0A845RC52	61.2	0.0000000000318	CopG family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0187472_4	1235802.C823_04889	48.9	0.0000004	N/A	N/A
structural_annotation	UHGV-0187472_4	PF01402,COG4710	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0187472_5	665956.HMPREF1032_03899	223.0	0	N/A	N/A
Pfam	UHGV-0187472_5	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
Pfam	UHGV-0187472_5	PF00036	N/A	N/A	EF hand	EF-hand_1
PHROG	UHGV-0187472_7	phrog_1129	71.0	1.2e-20	holin	lysis
UniRef90	UHGV-0187472_7	UniRef90_A0A0D8J2M2	172.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0187472_7	665956.HMPREF1032_03272	159.0	0	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0187472_7	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0187472_7	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0187472_8	phrog_4105	93.9	1.2e-27	N/A	unknown function
eggNOG-mapper	UHGV-0187472_8	657322.FPR_27220	112.0	4.72e-31	N/A	N/A
KOfam	UHGV-0187472_9	K19304	89.7	3.8e-26	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-0187472_9	phrog_7767	83.4	2.4e-24	metallo-endopeptidase	other
UniRef90	UHGV-0187472_9	UniRef90_A0A0W7TLV7	498.0	0	Peptidase_M23 domain-containing protein	N/A
eggNOG-mapper	UHGV-0187472_9	665956.HMPREF1032_00102	471.0	0	heme binding	N/A
Pfam	UHGV-0187472_9	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-0187472_9	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-0187472_9	PF01551,NF040883,COG0739	N/A	N/A	N/A	N/A
PHROG	UHGV-0187472_10	phrog_134	58.5	9.2e-17	N/A	unknown function
UniRef90	UHGV-0187472_10	UniRef90_A0A372V0Q1	82.8	3.27e-20	XkdX family protein	N/A
eggNOG-mapper	UHGV-0187472_10	697281.Mahau_0596	49.3	0.000000108	Phage uncharacterised protein (Phage_XkdX)	N/A
Pfam	UHGV-0187472_10	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
NCBIFam	UHGV-0187472_10	TIGR01669.1	N/A	N/A	XkdX family protein	N/A
structural_annotation	UHGV-0187472_10	PF09693,TIGR01669	N/A	N/A	N/A	N/A
PHROG	UHGV-0187472_11	phrog_24451	75.5	6.6e-22	N/A	unknown function
eggNOG-mapper	UHGV-0187472_11	931276.Cspa_c07590	72.0	0.00000000000000847	N/A	N/A
KOfam	UHGV-0187472_12	K19721	111.4	2.8e-33	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	N/A
PHROG	UHGV-0187472_12	phrog_819	116.9	3.09967e-42	tail protein	tail
UniRef90	UHGV-0187472_12	UniRef90_UPI0009EC2831	798.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-0187472_12	665956.HMPREF1032_03918	70.1	0.00000000032	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	N/A
Pfam	UHGV-0187472_12	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
PHROG	UHGV-0187472_13	phrog_3287	164.7	0	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0187472_13	693746.OBV_23870	422.0	0	N/A	N/A
structural_annotation	UHGV-0187472_13	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0187472_14	PF11650	N/A	N/A	N/A	N/A
PHROG	UHGV-0187472_15	phrog_422	147.5	7.84727e-44	major head protein	head and packaging
UniRef90	UHGV-0187472_15	UniRef90_UPI001F19F6D3	332.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0187472_15	1408437.JNJN01000001_gene1710	242.0	0	N/A	N/A
Pfam	UHGV-0187472_15	PF13290	N/A	N/A	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
structural_annotation	UHGV-0187472_15	PF19821,PF13287,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0187472_16	755731.Clo1100_2435	56.6	0.00000212	N/A	N/A
structural_annotation	UHGV-0187472_17	NF007241	N/A	N/A	N/A	N/A
PHROG	UHGV-0187472_18	phrog_156	111.6	2.2e-33	portal protein	head and packaging
eggNOG-mapper	UHGV-0187472_18	1408437.JNJN01000001_gene1708	358.0	0	N/A	N/A
structural_annotation	UHGV-0187472_18	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0187472_20	K21523	43.0	1.8e-19	gp17; terminase, large subunit [EC:3.1.-.-]	N/A
PHROG	UHGV-0187472_20	phrog_2	90.3	3.2e-26	terminase large subunit	head and packaging
UniRef90	UHGV-0187472_20	UniRef90_UPI00189AAAC0	539.0	0	DNA packaging protein	N/A
eggNOG-mapper	UHGV-0187472_20	693746.OBV_23980	493.0	0	phage Terminase large subunit	N/A
COG	UHGV-0187472_20	COG4373	N/A	N/A	Mu-like prophage FluMu protein gp28	N/A
structural_annotation	UHGV-0187472_20	PF03237,PF17289,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
UniRef90	UHGV-0187472_21	UniRef90_UPI001F42B438	104.0	1.81e-24	transposase	N/A
Pfam	UHGV-0187472_21	PF01527	N/A	N/A	Transposase	HTH_Tnp_1
structural_annotation	UHGV-0187472_22	PF06530,MF_00674,TIGR01637,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0187472_24	phrog_3584	237.3	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0187472_24	525255.HMPREF0077_0972	170.0	0	N/A	N/A
structural_annotation	UHGV-0187472_24	PF21578,NF033538	N/A	N/A	N/A	N/A
KOfam	UHGV-0187472_27	K00558	160.6	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0187472_27	phrog_116	202.1	0	DNA methyltransferase	other
UniRef90	UHGV-0187472_27	UniRef90_G9RV41	1080.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0187472_27	665956.HMPREF1032_00142	1080.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-0187472_27	MTase_II_00164	66.3	3.8e-27	Type II methyltransferase	RM
Pfam	UHGV-0187472_27	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0187472_27	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0187472_27	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A