UHGV-0187804 (vOTU-147044)

Viral Genome: UHGV-0187804

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0187804
vOTU ID	vOTU-147044
Representative Genome?	Yes
Source	GPD
Original Genome ID	uvig_595988
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	67 (Medium-quality)
Trimmed?	No
CheckV Viral Markers	18
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9827
Viral Hallmark Genes (geNomad)	9
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	37.69
Jumbo Phage?	No

Genome Content
Length (bps)	28,099
GC Content	53.29%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	47
CDS Density	96%
Average CDS Length (bps)	573.06
Total tRNA Genes	1
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 67)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0187804_1	645991.Sgly_0315	71.6	0.000000000000124	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0187804_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
PHROG	UHGV-0187804_2	phrog_111	167.4	0	DNA methyltransferase	other
UniRef90	UHGV-0187804_2	UniRef90_A0A7X5D119	218.0	0	Adenine methyltransferase	N/A
eggNOG-mapper	UHGV-0187804_2	1567011.A0A0A7RUD1_9VIRU	197.0	0	DNA N-6-adenine-methyltransferase (Dam)	N/A
PADLOC	UHGV-0187804_2	oMTase_00015	213.8	0	orphan methyltransferase	RM
Pfam	UHGV-0187804_2	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
NCBIFam	UHGV-0187804_2	TIGR01712.1	N/A	N/A	phage N-6-adenine-methyltransferase	N/A
structural_annotation	UHGV-0187804_2	PF05869,MF_03187,TIGR01712,COG2263	N/A	N/A	N/A	N/A
PHROG	UHGV-0187804_3	phrog_1770	104.8	8.1e-31	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0187804_3	UniRef90_A0A7W1N8Z0	105.0	5.44e-26	Holliday junction endonuclease	N/A
eggNOG-mapper	UHGV-0187804_3	329726.AM1_4255	103.0	4.9e-26	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	N/A
COG	UHGV-0187804_3	COG0817	N/A	N/A	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	N/A
structural_annotation	UHGV-0187804_3	PF16921,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
PHROG	UHGV-0187804_4	phrog_374	64.2	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0187804_4	UniRef90_UPI000977AB4C	150.0	1.39e-40	transcriptional regulator	N/A
eggNOG-mapper	UHGV-0187804_4	478749.BRYFOR_05054	138.0	8.6e-37	AP2 domain protein	N/A
structural_annotation	UHGV-0187804_4	PF17375	N/A	N/A	N/A	N/A
PHROG	UHGV-0187804_5	phrog_10714	44.1	0.0000000000023	N/A	unknown function
PHROG	UHGV-0187804_6	phrog_599	46.1	0.00000000000098	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-0187804_6	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0187804_6	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
structural_annotation	UHGV-0187804_6	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-0187804_7	phrog_15198	40.0	0.000000000061	N/A	unknown function
UniRef90	UHGV-0187804_7	UniRef90_A0A3A6ECV8	99.0	6.9e-25	N/A	N/A
eggNOG-mapper	UHGV-0187804_7	411470.RUMGNA_00214	75.5	0.00000000000000229	N/A	N/A
Pfam	UHGV-0187804_7	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0187804_7	PF04448,NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-0187804_15	phrog_36	45.3	0.0000000000015	transcriptional regulator	transcription regulation
UniRef90	UHGV-0187804_15	UniRef90_UPI001C10AB33	65.9	0.0000000000795	N/A	N/A
structural_annotation	UHGV-0187804_15	PF07374,TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-0187804_16	K03497	56.1	9.4e-16	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0187804_16	phrog_620	139.3	2.50006e-41	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0187804_16	UniRef90_A0A3D3Y046	307.0	0	Chromosome partitioning protein ParB	N/A
eggNOG-mapper	UHGV-0187804_16	985665.HPL003_12065	117.0	2.12e-28	DNA methylase	N/A
PADLOC	UHGV-0187804_16	MTase_II_00015	95.0	1.5e-27	Type II methyltransferase	RM
Pfam	UHGV-0187804_16	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0187804_16	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0187804_16	PF02195,TIGR04285,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-0187804_17	K21527	139.5	6.30024e-42	mom; adenine modification enzyme [EC:2.3.1.-]	N/A
PHROG	UHGV-0187804_17	phrog_1384	166.6	0	Mom-like DNA modification protein	other
UniRef90	UHGV-0187804_17	UniRef90_F0SQP3	271.0	0	Phage DNA modification protein	N/A
eggNOG-mapper	UHGV-0187804_17	619693.HMPREF6745_2515	287.0	0	N/A	N/A
structural_annotation	UHGV-0187804_17	PF16092,MF_02210,NF007025,COG3818	N/A	N/A	N/A	N/A
KOfam	UHGV-0187804_18	K06909	392.5	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0187804_18	phrog_3717	155.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0187804_18	UniRef90_A0A416S378	645.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0187804_18	33035.JPJF01000106_gene3136	479.0	0	Terminase small subunit	N/A
Pfam	UHGV-0187804_18	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0187804_18	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0187804_18	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0187804_18	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0187804_18	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0187804_19	phrog_533	376.2	0	portal protein	head and packaging
UniRef90	UHGV-0187804_19	UniRef90_A0A1C5N775	504.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0187804_19	1226322.HMPREF1545_00044	501.0	0	N/A	N/A
Pfam	UHGV-0187804_19	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0187804_19	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0187804_20	phrog_581	249.8	0	minor head protein	head and packaging
UniRef90	UHGV-0187804_20	UniRef90_A0A1C5N7V1	361.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0187804_20	525255.HMPREF0077_0390	283.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0187804_20	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-0187804_20	PF15542	N/A	N/A	Bacterial toxin 50	Ntox50
COG	UHGV-0187804_20	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0187804_20	PF06152,PF15542,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0187804_22	phrog_2303	63.1	2.8e-18	head scaffolding protein	head and packaging
UniRef90	UHGV-0187804_22	UniRef90_A0A4D6BD32	59.7	0.0000000928	Capsid and scaffold protein	N/A
eggNOG-mapper	UHGV-0187804_22	1226322.HMPREF1545_00049	82.8	1.99e-17	N/A	N/A
PHROG	UHGV-0187804_23	phrog_544	138.5	3.30006e-41	major head protein	head and packaging
UniRef90	UHGV-0187804_23	UniRef90_A0A1C6B5R0	558.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0187804_23	1232453.BAIF02000011_gene3359	380.0	0	N/A	N/A
Pfam	UHGV-0187804_23	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-0187804_23	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0187804_24	phrog_541	112.8	1.9e-33	head-tail adaptor	connector
eggNOG-mapper	UHGV-0187804_24	1235799.C818_04224	57.8	0.00000000841	N/A	N/A
PHROG	UHGV-0187804_25	phrog_3366	103.5	1.6e-30	N/A	unknown function
eggNOG-mapper	UHGV-0187804_25	1226322.HMPREF1545_00053	119.0	2.22e-32	N/A	N/A
structural_annotation	UHGV-0187804_25	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0187804_26	phrog_556	53.0	0.0000000000000046	minor head protein	head and packaging
UniRef90	UHGV-0187804_26	UniRef90_A0A1C5N8K8	94.7	3.42e-22	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0187804_26	1226322.HMPREF1545_00054	82.0	5.48e-18	Minor capsid protein	N/A
Pfam	UHGV-0187804_26	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0187804_26	PF11114,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0187804_27	phrog_3266	49.2	0.000000000000075	tail completion	connector
eggNOG-mapper	UHGV-0187804_27	1232443.BAIA02000078_gene24	120.0	5.17e-33	N/A	N/A
structural_annotation	UHGV-0187804_27	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0187804_28	phrog_3099	78.5	9.6e-23	N/A	unknown function
eggNOG-mapper	UHGV-0187804_28	1235797.C816_04186	217.0	0	N/A	N/A
structural_annotation	UHGV-0187804_28	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0187804_29	phrog_11299	49.6	0.000000000000074	N/A	unknown function
eggNOG-mapper	UHGV-0187804_29	693746.OBV_18160	145.0	5.60519e-43	N/A	N/A
structural_annotation	UHGV-0187804_29	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0187804_30	phrog_706	117.4	1e-34	N/A	unknown function
UniRef90	UHGV-0187804_30	UniRef90_A0A2U1BEN4	197.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0187804_30	693746.OBV_18170	177.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0187804_30	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0187804_30	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0187804_31	phrog_1535	102.0	1.4013e-45	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0187804_31	1235797.C816_04182	135.0	7.49e-30	SLT domain	N/A
COG	UHGV-0187804_31	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0187804_31	PF05546,TIGR02559	N/A	N/A	N/A	N/A
PHROG	UHGV-0187804_32	phrog_1194	58.8	9.6e-17	N/A	unknown function
structural_annotation	UHGV-0187804_32	PF20458,TIGR02126,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-0187804_33	UniRef90_A0A2Z4QA17	98.2	3.43e-21	KID repeat-containing protein	N/A
eggNOG-mapper	UHGV-0187804_33	1235797.C816_04180	97.4	1.12e-21	N/A	N/A
structural_annotation	UHGV-0187804_33	PF21683,TIGR02126,COG4379	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0187804_34	1235797.C816_04179	87.8	4.84e-16	Chaperone of endosialidase	N/A
structural_annotation	UHGV-0187804_34	NF041249,COG4379	N/A	N/A	N/A	N/A
UniRef90	UHGV-0187804_35	UniRef90_A0A8D9PDX6	62.8	0.0000000000603	Zinc-finger double domain protein	N/A
structural_annotation	UHGV-0187804_35	PF07238	N/A	N/A	N/A	N/A
PHROG	UHGV-0187804_38	phrog_863	46.7	0.0000000000007	tail fiber assembly	tail
Pfam	UHGV-0187804_38	PF21722	N/A	N/A	Glycine-rich domain	Gly_rich_2
structural_annotation	UHGV-0187804_38	PF21722	N/A	N/A	N/A	N/A
KOfam	UHGV-0187804_40	K07273	138.2	7.59994e-41	acm; lysozyme	N/A
PHROG	UHGV-0187804_40	phrog_291	160.7	0	endolysin	lysis
UniRef90	UHGV-0187804_40	UniRef90_A0A3R6RNG6	194.0	0	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	N/A
eggNOG-mapper	UHGV-0187804_40	742722.HMPREF9463_00268	162.0	8.40779e-45	CW_7 repeat	N/A
Pfam	UHGV-0187804_40	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0187804_40	PF08230	N/A	N/A	CW_7 repeat	CW_7
COG	UHGV-0187804_40	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0187804_40	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0187804_41	phrog_37604	76.1	3.9e-22	N/A	unknown function
eggNOG-mapper	UHGV-0187804_41	585501.HMPREF6123_0817	76.6	6.93e-16	N/A	N/A
PHROG	UHGV-0187804_42	phrog_1129	81.2	7.4e-24	holin	lysis
UniRef90	UHGV-0187804_42	UniRef90_A0A3R8INC9	107.0	1.95e-28	Enolase	N/A
eggNOG-mapper	UHGV-0187804_42	1007096.BAGW01000036_gene2663	101.0	6.83e-27	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0187804_42	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0187804_42	PF06946	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0187804_45	445972.ANACOL_01878	65.1	0.0000000000124	N/A	N/A
eggNOG-mapper	UHGV-0187804_47	1408437.JNJN01000043_gene803	78.6	4.01e-16	N/A	N/A