UHGV-0187909 (vOTU-029731)

Viral Genome: UHGV-0187909

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0187909
vOTU ID	vOTU-029731
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_593596
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.44 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9772
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.74
Jumbo phage	No

Genome content
Genome length (bp)	31,933
GC content	54.75%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	49
CDS density	92%
Average CDS length (bps)	600.43
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 87.44)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0187909_1	phrog_361	55.7	9.6e-16	terminase small subunit	head and packaging
UniRef90	UHGV-0187909_1	UniRef90_A0A1C6H6I9	123.0	6.04e-34	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0187909_1	1033744.CAEL01000029_gene1286	61.6	0.0000000002	Phage terminase, small subunit	N/A
Pfam	UHGV-0187909_1	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0187909_1	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0187909_2	phrog_9	291.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0187909_2	UniRef90_A0A0D8IV16	944.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0187909_2	1226322.HMPREF1545_00113	833.0	0	Phage Terminase	N/A
Pfam	UHGV-0187909_2	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0187909_2	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0187909_2	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0187909_2	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0187909_3	phrog_12	179.8	0	portal protein	head and packaging
UniRef90	UHGV-0187909_3	UniRef90_A0A0D8IVL0	560.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0187909_3	1226322.HMPREF1545_00114	468.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0187909_3	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0187909_3	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0187909_3	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0187909_3	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0187909_4	K06904	158.7	0	N/A	N/A
PHROG	UHGV-0187909_4	phrog_80	175.6	0	head maturation protease	head and packaging
UniRef90	UHGV-0187909_4	UniRef90_U2SBX0	260.0	0	Phage prohead protease, HK97 family	N/A
eggNOG-mapper	UHGV-0187909_4	1226322.HMPREF1545_00115	260.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0187909_4	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0187909_4	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0187909_4	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0187909_4	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0187909_5	phrog_10	187.0	0	major head protein	head and packaging
UniRef90	UHGV-0187909_5	UniRef90_A0A1C6H720	610.0	0	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
eggNOG-mapper	UHGV-0187909_5	1226322.HMPREF1545_00116	546.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0187909_5	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0187909_5	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0187909_5	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0187909_5	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0187909_5	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0187909_6	phrog_2550	70.3	1.8e-20	N/A	unknown function
UniRef90	UHGV-0187909_6	UniRef90_R5V091	84.7	1.64e-19	Phage related protein	N/A
eggNOG-mapper	UHGV-0187909_6	1226322.HMPREF1545_00117	93.6	8.8e-24	N/A	N/A
structural_annotation	UHGV-0187909_6	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0187909_7	phrog_19734	79.1	6.1e-23	N/A	unknown function
UniRef90	UHGV-0187909_7	UniRef90_A0A3R6AW46	70.9	0.000000000000174	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-0187909_7	1235798.C817_04587	70.5	0.0000000000000384	N/A	N/A
structural_annotation	UHGV-0187909_7	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0187909_8	1232446.BAIE02000002_gene829	90.1	1.75e-22	N/A	N/A
PHROG	UHGV-0187909_9	phrog_5	50.1	0.000000000000067	tail completion or Neck1 protein	connector
UniRef90	UHGV-0187909_9	UniRef90_A0A1C6FG30	147.0	2.04029e-42	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0187909_9	908340.HMPREF9406_2573	120.0	1.57e-32	N/A	N/A
structural_annotation	UHGV-0187909_9	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0187909_10	phrog_88	87.9	1.3e-25	major tail protein	tail
UniRef90	UHGV-0187909_10	UniRef90_G9YSC5	102.0	1.65e-23	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0187909_10	33035.JPJF01000039_gene278	65.1	0.000000000294	N/A	N/A
NCBIFam	UHGV-0187909_10	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0187909_10	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0187909_13	phrog_8462	93.0	4.4e-27	tail length tape measure protein	tail
UniRef90	UHGV-0187909_13	UniRef90_A0A7X6UMX1	157.0	3.93e-39	Phage tail protein (Fragment)	N/A
eggNOG-mapper	UHGV-0187909_13	498761.HM1_2969	169.0	1.56945e-42	nuclear chromosome segregation	N/A
COG	UHGV-0187909_13	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0187909_13	PF20155	N/A	N/A	N/A	N/A
PHROG	UHGV-0187909_14	phrog_33	86.7	4.6e-25	distal tail protein Dit	tail
UniRef90	UHGV-0187909_14	UniRef90_A0A173Z1X4	196.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0187909_14	1262449.CP6013_2095	107.0	9.17e-26	tail component	N/A
Pfam	UHGV-0187909_14	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0187909_14	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0187909_14	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0187909_14	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0187909_15	phrog_1067	358.4	0	minor head protein	head and packaging
UniRef90	UHGV-0187909_15	UniRef90_A0A1C6H6B4	526.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0187909_15	1123263.AUKY01000068_gene489	373.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0187909_15	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-0187909_15	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
NCBIFam	UHGV-0187909_15	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0187909_15	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0187909_15	PF14594,PF13884,TIGR01665,COG4926	N/A	N/A	N/A	N/A
KOfam	UHGV-0187909_16	K16628	184.2	0	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-0187909_16	phrog_819	151.0	0	tail protein	tail
eggNOG-mapper	UHGV-0187909_16	1519439.JPJG01000060_gene1892	75.5	0.0000000000429	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-0187909_16	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0187909_16	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
NCBIFam	UHGV-0187909_20	TIGR01167.1	N/A	N/A	LPXTG cell wall anchor domain-containing protein	N/A
structural_annotation	UHGV-0187909_20	PF12988	N/A	N/A	N/A	N/A
KOfam	UHGV-0187909_21	K21471	68.4	1.7e-19	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	N/A
PHROG	UHGV-0187909_21	phrog_329	45.0	0.0000000000005	minor tail protein	tail
UniRef90	UHGV-0187909_21	UniRef90_A0A2V2EEK9	134.0	1.97e-35	NlpC/P60 domain-containing protein	N/A
eggNOG-mapper	UHGV-0187909_21	1089546.AQUI01000002_gene3251	63.5	0.00000000827	NlpC/P60 family	N/A
Pfam	UHGV-0187909_21	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-0187909_21	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0187909_21	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0187909_21	PF00877,PF01471,NF033743,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0187909_22	phrog_199	97.8	1.1e-28	holin	lysis
UniRef90	UHGV-0187909_22	UniRef90_A0A316PI30	171.0	0	Holin	N/A
eggNOG-mapper	UHGV-0187909_22	1216932.CM240_0689	117.0	5.13e-32	toxin secretion phage lysis holin	N/A
Pfam	UHGV-0187909_22	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0187909_22	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0187909_22	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0187909_22	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
Pfam	UHGV-0187909_25	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0187909_25	PF21291,TIGR02607,COG3093	N/A	N/A	N/A	N/A
UniRef90	UHGV-0187909_27	UniRef90_A0A415ZLW7	71.6	0.0000000000000744	DNA-binding response regulator	N/A
eggNOG-mapper	UHGV-0187909_27	689781.AUJX01000009_gene401	67.8	0.00000000000448	N/A	N/A
structural_annotation	UHGV-0187909_27	PF00196,NF040595,COG2771	N/A	N/A	N/A	N/A
KOfam	UHGV-0187909_28	K06400	300.1	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0187909_28	phrog_95	306.1	0	integrase	integration and excision
UniRef90	UHGV-0187909_28	UniRef90_A0A352UMB6	421.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0187909_28	1128398.Curi_c22150	397.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0187909_28	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0187909_28	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0187909_28	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0187909_28	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0187909_28	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-0187909_29	UniRef90_A0A542YGG9	75.1	0.000000000003	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0187909_29	1280682.AUKA01000008_gene3204	60.5	0.0000000741	Sh3 type 3 domain protein	N/A
COG	UHGV-0187909_29	COG3103	N/A	N/A	N/A	N/A
PHROG	UHGV-0187909_30	phrog_8	46.7	0.00000000000074	transcriptional regulator	transcription regulation
UniRef90	UHGV-0187909_30	UniRef90_A0A2X2WL53	65.5	0.000000000146	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0187909_30	742740.HMPREF9474_01673	65.5	0.0000000000245	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0187909_30	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
PHROG	UHGV-0187909_31	phrog_8	60.9	3.4e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0187909_31	UniRef90_A8U888	75.1	4.37e-16	Transcriptional regulator, Cro/CI family protein	N/A
eggNOG-mapper	UHGV-0187909_31	226185.EF_2040	72.4	0.00000000000000101	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0187909_31	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0187909_31	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0187909_31	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0187909_33	phrog_10993	40.3	0.000000000033	Hoc-like head decoration	head and packaging
Pfam	UHGV-0187909_33	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0187909_33	PF19789	N/A	N/A	N/A	N/A
KOfam	UHGV-0187909_34	K07451	42.7	0.00000000001	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0187909_34	phrog_7370	61.1	1.7e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0187909_34	UniRef90_UPI00082FB90B	137.0	3.41e-40	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0187909_34	445972.ANACOL_01826	104.0	5.57e-28	HNH nucleases	N/A
Pfam	UHGV-0187909_34	PF01844	N/A	N/A	HNH endonuclease	HNH
Pfam	UHGV-0187909_36	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
PHROG	UHGV-0187909_37	phrog_24368	46.0	0.00000000000045	N/A	unknown function
PHROG	UHGV-0187909_38	phrog_428	91.1	2e-26	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0187909_38	UniRef90_UPI00112CDEA2	55.5	0.00000426	conserved phage C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0187909_38	642492.Clole_1831	76.3	0.0000000000000194	Helix-turn-helix domain	N/A
Pfam	UHGV-0187909_38	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0187909_38	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-0187909_38	COG1846	N/A	N/A	DNA-binding transcriptional regulator, MarR family	N/A
structural_annotation	UHGV-0187909_38	PF09524,TIGR02220	N/A	N/A	N/A	N/A
PHROG	UHGV-0187909_39	phrog_111	156.8	0	DNA methyltransferase	other
UniRef90	UHGV-0187909_39	UniRef90_A0A1C6GCR8	242.0	0	Phage N-6-adenine-methyltransferase	N/A
eggNOG-mapper	UHGV-0187909_39	445972.ANACOL_03344	207.0	0	DNA N-6-adenine-methyltransferase (Dam)	N/A
PADLOC	UHGV-0187909_39	oMTase_00015	180.9	0	orphan methyltransferase	RM
Pfam	UHGV-0187909_39	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-0187909_39	PF05869,TIGR01712,COG0338	N/A	N/A	N/A	N/A
PHROG	UHGV-0187909_41	phrog_3584	109.5	3.2e-32	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0187909_41	537013.CLOSTMETH_02141	90.9	8.2e-20	N/A	N/A
structural_annotation	UHGV-0187909_41	PF21578,MF_00360	N/A	N/A	N/A	N/A
PHROG	UHGV-0187909_42	phrog_21498	296.1	0	N/A	unknown function
UniRef90	UHGV-0187909_42	UniRef90_A0A250ETS9	222.0	0	Chromosome partitioning protein ParB	N/A
eggNOG-mapper	UHGV-0187909_42	1095750.HMPREF9970_2290	238.0	0	chromosome segregation	N/A
COG	UHGV-0187909_42	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0187909_42	PF05869,TIGR01712	N/A	N/A	N/A	N/A
PHROG	UHGV-0187909_43	phrog_824	139.4	9.99967e-42	N/A	unknown function
UniRef90	UHGV-0187909_43	UniRef90_UPI001B37B675	129.0	4.29e-36	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0187909_43	411470.RUMGNA_02049	127.0	1e-35	VRR-NUC domain	N/A
Pfam	UHGV-0187909_43	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
PHROG	UHGV-0187909_45	phrog_22543	51.6	0.000000000000018	N/A	unknown function
Pfam	UHGV-0187909_47	PF20037	N/A	N/A	N/A	DUF6440
structural_annotation	UHGV-0187909_47	PF20037	N/A	N/A	N/A	N/A
Pfam	UHGV-0187909_48	PF07374	N/A	N/A	N/A	DUF1492