UHGV-0187937 (vOTU-046994)

Viral Genome: UHGV-0187937

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0187937
vOTU ID	vOTU-046994
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMEA3951686_b1_ct2@circular@Siphoviridae__sp._ctZTi2
Associated BioSample	SAMEA3951686
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9821
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.3
Jumbo phage	No

Genome content
Genome length (bp)	45,512
GC content	40.95%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	70
CDS density	91%
Average CDS length (bps)	592.24
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0187937_2	K22300	73.5	4.1e-21	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0187937_2	phrog_8	70.3	4e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0187937_2	UniRef90_A0A395X7H2	221.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0187937_2	397288.C806_00131	99.8	4.89e-25	Transcriptional	N/A
PADLOC	UHGV-0187937_2	retron_type_VI_hth_cluster2_1	44.2	0.0000000000025	N/A	Retron
Pfam	UHGV-0187937_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0187937_2	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0187937_2	PF01381,MF_02017,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0187937_3	UniRef90_A0A395X814	141.0	8.71608e-43	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0187937_3	1121289.JHVL01000079_gene1187	60.5	0.0000000000236	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0187937_3	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0187937_3	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0187937_4	PF13601,MF_01819,NF008565,COG1846	N/A	N/A	N/A	N/A
PHROG	UHGV-0187937_5	phrog_463	198.1	0	anti-repressor	transcription regulation
UniRef90	UHGV-0187937_5	UniRef90_A0A3A6GZT3	357.0	0	Phage repressor protein	N/A
eggNOG-mapper	UHGV-0187937_5	411490.ANACAC_00813	206.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0187937_5	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0187937_5	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0187937_5	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0187937_5	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-0187937_6	phrog_6058	54.5	0.0000000000000012	N/A	unknown function
eggNOG-mapper	UHGV-0187937_6	742733.HMPREF9469_05094	73.6	8.84e-16	N/A	N/A
AcrCatalog	UHGV-0187937_7	cluster_17974	58.9	0.00000000000000303	NA	N/A
structural_annotation	UHGV-0187937_11	NF001645	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0187937_12	1235798.C817_05064	65.1	0.000000000000297	N/A	N/A
UniRef90	UHGV-0187937_13	UniRef90_R6RDX0	68.6	0.0000000000000684	Arginyl-tRNA synthetase	N/A
PHROG	UHGV-0187937_14	phrog_155	148.3	4.34403e-44	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0187937_14	UniRef90_A0A1V5UPJ3	176.0	0	ERF superfamily protein	N/A
eggNOG-mapper	UHGV-0187937_14	762982.HMPREF9442_00551	168.0	0	Erf family	N/A
Pfam	UHGV-0187937_14	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0187937_14	PF04404,TIGR00607,COG1978	N/A	N/A	N/A	N/A
KOfam	UHGV-0187937_15	K03111	138.7	6.29996e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0187937_15	phrog_44	141.3	6.19934e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0187937_15	UniRef90_A0A412ELG8	275.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0187937_15	742723.HMPREF9477_01387	184.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0187937_15	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0187937_15	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0187937_15	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0187937_15	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0187937_15	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0187937_16	phrog_3490	147.4	6.86636e-44	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0187937_16	UniRef90_A0A395XB48	335.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0187937_16	357809.Cphy_2986	215.0	0	N/A	N/A
Pfam	UHGV-0187937_16	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-0187937_16	PF03834,NF040956,COG1948	N/A	N/A	N/A	N/A
KOfam	UHGV-0187937_17	K02316	65.7	7.8e-19	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0187937_17	phrog_11992	153.0	1.4013e-45	N/A	unknown function
UniRef90	UHGV-0187937_17	UniRef90_A0A412EM56	322.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-0187937_17	476272.RUMHYD_01741	186.0	0	CHC2 zinc finger	N/A
PADLOC	UHGV-0187937_17	drt-UG29	54.1	0.0000000000000014	DRT	DRT
Pfam	UHGV-0187937_17	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-0187937_17	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0187937_17	PF01807,PF00401	N/A	N/A	N/A	N/A
PHROG	UHGV-0187937_18	phrog_8841	556.9	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0187937_18	UniRef90_A0A412EL97	1228.0	0	N/A	N/A
eggNOG-mapper	UHGV-0187937_18	476272.RUMHYD_01742	776.0	0	N/A	N/A
Pfam	UHGV-0187937_18	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0187937_18	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0187937_18	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0187937_18	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0187937_19	NF010187	N/A	N/A	N/A	N/A
UniRef90	UHGV-0187937_20	UniRef90_A0A6L8SWV5	142.0	1.41952e-42	Winged helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0187937_20	PF13412	N/A	N/A	Winged helix-turn-helix DNA-binding	HTH_24
COG	UHGV-0187937_20	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0187937_20	PF01726,COG0640	N/A	N/A	N/A	N/A
PHROG	UHGV-0187937_21	phrog_17690	126.5	1e-37	N/A	unknown function
eggNOG-mapper	UHGV-0187937_21	476272.RUMHYD_03925	158.0	0	N/A	N/A
PHROG	UHGV-0187937_25	phrog_20593	41.2	0.000000000028	N/A	unknown function
PHROG	UHGV-0187937_26	phrog_8684	110.1	1.3e-32	N/A	unknown function
UniRef90	UHGV-0187937_26	UniRef90_A0A3A6GQT2	185.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0187937_26	457412.RSAG_01162	94.4	1.74e-22	YopX protein	N/A
Pfam	UHGV-0187937_26	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0187937_26	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0187937_26	PF09643,TIGR01671	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0187937_27	PF06107,COG4481	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0187937_32	397290.C810_01492	59.3	0.00000000459	N/A	N/A
KOfam	UHGV-0187937_35	K06909	416.9	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0187937_35	phrog_3717	161.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0187937_35	UniRef90_A0A412EKJ9	976.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0187937_35	33035.JPJF01000106_gene3136	667.0	0	Terminase small subunit	N/A
Pfam	UHGV-0187937_35	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
Pfam	UHGV-0187937_35	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0187937_35	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0187937_35	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0187937_35	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0187937_35	PF04466,PF17288,PF03592,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0187937_36	phrog_533	283.0	0	portal protein	head and packaging
UniRef90	UHGV-0187937_36	UniRef90_A0A1C6CDM8	700.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0187937_36	33035.JPJF01000106_gene3135	535.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0187937_36	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0187937_38	phrog_581	271.8	0	minor head protein	head and packaging
UniRef90	UHGV-0187937_38	UniRef90_A0A395X791	764.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0187937_38	476272.RUMHYD_01761	424.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0187937_38	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0187937_38	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0187937_38	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0187937_39	phrog_3754	113.6	1.4e-33	N/A	unknown function
eggNOG-mapper	UHGV-0187937_39	476272.RUMHYD_01764	174.0	0	N/A	N/A
UniRef90	UHGV-0187937_40	UniRef90_A0A395X7A4	178.0	0	CTP synthase	N/A
eggNOG-mapper	UHGV-0187937_40	476272.RUMHYD_01766	120.0	3.06e-34	N/A	N/A
PHROG	UHGV-0187937_42	phrog_25567	43.3	0.0000000000059	N/A	unknown function
UniRef90	UHGV-0187937_42	UniRef90_A0A416SH94	85.1	9.24e-21	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0187937_42	1321782.HMPREF1986_01432	58.5	0.00000000125	Helix-turn-helix	N/A
COG	UHGV-0187937_42	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0187937_42	PF01381,NF040522,COG2944	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0187937_44	411490.ANACAC_00698	122.0	3.02e-34	N/A	N/A
AcrCatalog	UHGV-0187937_44	cluster_81672	72.8	6.12e-19	NA	N/A
PHROG	UHGV-0187937_45	phrog_21718	131.2	4.6e-39	N/A	unknown function
eggNOG-mapper	UHGV-0187937_45	476272.RUMHYD_01768	130.0	1.6e-36	N/A	N/A
PHROG	UHGV-0187937_46	phrog_22984	96.5	1.6e-28	N/A	unknown function
PHROG	UHGV-0187937_47	phrog_16490	189.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0187937_47	397290.C810_01328	188.0	0	N/A	N/A
PHROG	UHGV-0187937_48	phrog_20016	202.3	0	N/A	unknown function
UniRef90	UHGV-0187937_48	UniRef90_A0A285PT46	171.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0187937_48	397290.C810_05214	188.0	0	N/A	N/A
structural_annotation	UHGV-0187937_48	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0187937_49	phrog_28802	225.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0187937_49	476272.RUMHYD_01772	199.0	0	N/A	N/A
PHROG	UHGV-0187937_50	phrog_194	67.5	2.7e-19	head scaffolding protein	head and packaging
UniRef90	UHGV-0187937_50	UniRef90_UPI001D14C9C8	188.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0187937_50	476272.RUMHYD_01775	199.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0187937_50	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-0187937_51	phrog_544	166.6	0	major head protein	head and packaging
UniRef90	UHGV-0187937_51	UniRef90_A0A395X7A1	708.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0187937_51	1232453.BAIF02000011_gene3359	391.0	0	N/A	N/A
Pfam	UHGV-0187937_51	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-0187937_51	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0187937_52	phrog_541	96.0	2e-28	head-tail adaptor	connector
eggNOG-mapper	UHGV-0187937_52	476272.RUMHYD_01778	105.0	1.28e-26	N/A	N/A
PHROG	UHGV-0187937_54	phrog_1129	75.8	3.8e-22	holin	lysis
UniRef90	UHGV-0187937_54	UniRef90_A0A395X7B2	170.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0187937_54	411461.DORFOR_00721	117.0	3.06e-33	N/A	N/A
Pfam	UHGV-0187937_54	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0187937_54	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0187937_55	phrog_3366	95.3	6e-28	N/A	unknown function
eggNOG-mapper	UHGV-0187937_55	476272.RUMHYD_01779	160.0	0	N/A	N/A
structural_annotation	UHGV-0187937_55	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0187937_56	phrog_556	66.0	3.9e-19	minor head protein	head and packaging
UniRef90	UHGV-0187937_56	UniRef90_UPI000E4989EB	296.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0187937_56	476272.RUMHYD_01780	161.0	0	N/A	N/A
Pfam	UHGV-0187937_56	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0187937_56	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0187937_57	phrog_3266	92.4	3.8e-27	tail completion	connector
eggNOG-mapper	UHGV-0187937_57	476272.RUMHYD_01781	150.0	4.90454e-44	N/A	N/A
structural_annotation	UHGV-0187937_57	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0187937_58	phrog_3099	132.6	2.6e-39	N/A	unknown function
eggNOG-mapper	UHGV-0187937_58	411902.CLOBOL_00129	171.0	0	N/A	N/A
structural_annotation	UHGV-0187937_58	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0187937_59	phrog_11299	66.5	4.8e-19	N/A	unknown function
eggNOG-mapper	UHGV-0187937_59	411459.RUMOBE_01382	59.3	0.00000000298	N/A	N/A
structural_annotation	UHGV-0187937_59	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0187937_60	phrog_706	130.8	1e-38	N/A	unknown function
UniRef90	UHGV-0187937_60	UniRef90_UPI001BAD00AD	211.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0187937_60	411459.RUMOBE_01383	354.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0187937_60	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0187937_60	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0187937_61	phrog_1535	542.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0187937_61	UniRef90_A0A173R880	485.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0187937_61	476272.RUMHYD_01785	492.0	0	phage tail tape measure protein	N/A
COG	UHGV-0187937_61	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0187937_61	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0187937_62	phrog_1194	84.7	8.5e-25	N/A	unknown function
structural_annotation	UHGV-0187937_62	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0187937_63	phrog_6616	545.2	0	tail protein	tail
UniRef90	UHGV-0187937_63	UniRef90_A0A352BLY8	511.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0187937_63	33035.JPJF01000043_gene1002	221.0	0	N/A	N/A
structural_annotation	UHGV-0187937_63	PF05113,PF18432,NF033848,NF011735,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0187937_64	phrog_18444	76.3	2.7e-22	N/A	unknown function
KOfam	UHGV-0187937_65	K19719	94.4	2.2e-28	COL2A; collagen type II alpha	N/A
PHROG	UHGV-0187937_65	phrog_819	132.0	8.69996e-41	tail protein	tail
UniRef90	UHGV-0187937_65	UniRef90_A0A3A6GQL7	1123.0	0	Fibronectin type-III domain-containing protein	N/A
eggNOG-mapper	UHGV-0187937_65	1508644.SFBmNL_00815	99.8	1.12e-18	N/A	N/A
Pfam	UHGV-0187937_65	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
Pfam	UHGV-0187937_65	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0187937_65	PF19789,PF16323,COG2033	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0187937_67	NF040910	N/A	N/A	N/A	N/A
PHROG	UHGV-0187937_68	phrog_9589	78.9	6.5e-23	endolysin	lysis
UniRef90	UHGV-0187937_68	UniRef90_A0A6N9LGV5	457.0	0	CHAP domain-containing protein	N/A
eggNOG-mapper	UHGV-0187937_68	1123075.AUDP01000020_gene1533	330.0	0	pathogenesis	N/A
Pfam	UHGV-0187937_68	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-0187937_68	COG3942	N/A	N/A	Surface antigen	N/A
structural_annotation	UHGV-0187937_68	PF08230,PF19087	N/A	N/A	N/A	N/A
KOfam	UHGV-0187937_69	K14059	101.0	1.9e-29	int; integrase	N/A
PHROG	UHGV-0187937_69	phrog_1	123.9	1.7e-36	integrase	integration and excision
UniRef90	UHGV-0187937_69	UniRef90_A0A6L8SXX0	756.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0187937_69	1235792.C808_05256	359.0	0	Belongs to the 'phage' integrase family	N/A
COG	UHGV-0187937_69	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0187937_69	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0187937_70	phrog_8545	55.5	9.1e-16	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0187937_70	UniRef90_UPI001C0EAFDF	238.0	0	OB-fold putative lipoprotein	N/A
eggNOG-mapper	UHGV-0187937_70	1304866.K413DRAFT_0836	185.0	0	tRNA_anti-like	N/A
Pfam	UHGV-0187937_70	PF12869	N/A	N/A	tRNA_anti-like	tRNA_anti-like
structural_annotation	UHGV-0187937_70	PF12869,PF10571,MF_01959,TIGR03943,COG5235	N/A	N/A	N/A	N/A