UHGV-0188135 (vOTU-047008)

Viral Genome: UHGV-0188135

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0188135
vOTU ID	vOTU-047008
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMEA1906416_a1_ct1426@circular@Siphoviridae__sp._ctk7K426
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9793
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.54
Jumbo phage	No

Genome content
Genome length (bp)	31,269
GC content	60.42%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	49
CDS density	94%
Average CDS length (bps)	601.96
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0188135_1	phrog_749	69.3	4.6e-20	N/A	unknown function
UniRef90	UHGV-0188135_1	UniRef90_UPI001C0FB8A8	56.2	0.0000000351	head-tail connector protein	N/A
eggNOG-mapper	UHGV-0188135_1	349161.Dred_2603	80.5	2.22e-18	N/A	N/A
PHROG	UHGV-0188135_2	phrog_19734	117.6	7.6e-35	N/A	unknown function
UniRef90	UHGV-0188135_2	UniRef90_A0A6I7GNS7	125.0	2.36e-34	Phage head closure protein	N/A
eggNOG-mapper	UHGV-0188135_2	1235798.C817_04587	61.2	0.000000000227	N/A	N/A
structural_annotation	UHGV-0188135_2	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0188135_3	999413.HMPREF1094_02005	77.8	5.12e-17	N/A	N/A
structural_annotation	UHGV-0188135_3	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0188135_4	phrog_5	46.6	0.00000000000071	tail completion or Neck1 protein	connector
UniRef90	UHGV-0188135_4	UniRef90_A0A1C6FG30	137.0	3.67e-38	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0188135_4	908340.HMPREF9406_2573	133.0	1.19e-37	N/A	N/A
structural_annotation	UHGV-0188135_4	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0188135_5	phrog_88	95.7	5.2e-28	major tail protein	tail
UniRef90	UHGV-0188135_5	UniRef90_A0A1C6CIL7	136.0	9.79e-36	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0188135_5	33035.JPJF01000039_gene278	71.6	0.0000000000011	N/A	N/A
NCBIFam	UHGV-0188135_5	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0188135_5	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0188135_8	phrog_3981	263.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0188135_8	UniRef90_A0A373CK98	303.0	0	PblA (Fragment)	N/A
eggNOG-mapper	UHGV-0188135_8	1216932.CM240_0625	323.0	0	tape measure	N/A
COG	UHGV-0188135_8	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0188135_8	PF05537,MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-0188135_9	phrog_33	58.5	1.9e-16	distal tail protein Dit	tail
UniRef90	UHGV-0188135_9	UniRef90_A0A173Z1X4	177.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0188135_9	536233.CLO_0897	94.4	1.04e-20	tail component	N/A
COG	UHGV-0188135_9	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0188135_9	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0188135_10	phrog_1067	273.8	0	minor head protein	head and packaging
UniRef90	UHGV-0188135_10	UniRef90_A0A316NPB5	391.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0188135_10	1123263.AUKY01000068_gene489	302.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0188135_10	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0188135_10	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0188135_10	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0188135_10	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0188135_11	1408437.JNJN01000002_gene1389	60.1	0.000000597	N/A	N/A
structural_annotation	UHGV-0188135_11	PF10651,COG5513	N/A	N/A	N/A	N/A
PHROG	UHGV-0188135_12	phrog_4105	82.5	4.4e-24	N/A	unknown function
UniRef90	UHGV-0188135_12	UniRef90_A0A8D9UHA9	124.0	7.96e-35	Holin protein	N/A
eggNOG-mapper	UHGV-0188135_12	742740.HMPREF9474_02252	106.0	2.44e-28	N/A	N/A
PHROG	UHGV-0188135_13	phrog_881	90.2	1.2e-26	holin	lysis
UniRef90	UHGV-0188135_13	UniRef90_UPI00189D3A4F	85.5	1.61e-20	phage holin	N/A
eggNOG-mapper	UHGV-0188135_13	742740.HMPREF9474_02251	82.4	4.96e-20	Putative phage holin Dp-1	N/A
Pfam	UHGV-0188135_13	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0188135_13	PF16938	N/A	N/A	N/A	N/A
KOfam	UHGV-0188135_14	K01448	49.3	0.00000000000007	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0188135_14	phrog_435	72.4	8.4e-21	endolysin	lysis
UniRef90	UHGV-0188135_14	UniRef90_A0A810PUG7	206.0	0	SPOR domain-containing protein	N/A
eggNOG-mapper	UHGV-0188135_14	1297617.JPJD01000020_gene325	89.0	3.13e-18	Bacterial SH3 domain	N/A
Pfam	UHGV-0188135_14	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0188135_14	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0188135_14	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0188135_14	PF01520,PF01471,MF_00562,TIGR02883,TIGR03979,COG0860,COG3409	N/A	N/A	N/A	N/A
KOfam	UHGV-0188135_15	K07726	41.0	0.000000000035	K07726; putative transcriptional regulator	N/A
PHROG	UHGV-0188135_15	phrog_25567	53.0	0.0000000000000052	N/A	unknown function
UniRef90	UHGV-0188135_15	UniRef90_UPI00164AED9E	119.0	8.54e-33	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0188135_15	1235798.C817_04600	82.4	5.22e-19	N/A	N/A
Pfam	UHGV-0188135_15	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0188135_15	NF040522,COG2944	N/A	N/A	N/A	N/A
KOfam	UHGV-0188135_16	K14059	147.0	2.20004e-43	int; integrase	N/A
PHROG	UHGV-0188135_16	phrog_1	147.4	1.09301e-43	integrase	integration and excision
UniRef90	UHGV-0188135_16	UniRef90_UPI001EDEB0AD	284.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0188135_16	1226322.HMPREF1545_00144	226.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0188135_16	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0188135_16	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0188135_16	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0188135_17	1262449.CP6013_2082	166.0	0	N/A	N/A
structural_annotation	UHGV-0188135_17	PF11631,TIGR03066	N/A	N/A	N/A	N/A
UniRef90	UHGV-0188135_19	UniRef90_A0A1Y4C9D7	90.5	2.44e-21	HTH cro/C1-type domain-containing protein	N/A
COG	UHGV-0188135_19	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0188135_19	PF13443,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0188135_20	K02342	179.5	0	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-0188135_20	phrog_192	157.3	0	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0188135_20	UniRef90_UPI001897CA3A	279.0	0	exonuclease	N/A
eggNOG-mapper	UHGV-0188135_20	1437608.BBIA_1844	257.0	0	Exonuclease, DNA polymerase III, epsilon subunit family	N/A
PADLOC	UHGV-0188135_20	cd06127	133.8	1.6e-39	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-0188135_20	PF00929	N/A	N/A	Exonuclease	RNase_T
Pfam	UHGV-0188135_20	PF00533	N/A	N/A	BRCA1 C Terminus (BRCT) domain	BRCT
NCBIFam	UHGV-0188135_20	TIGR00573.1	N/A	N/A	exonuclease, DNA polymerase III, epsilon subunit family	N/A
COG	UHGV-0188135_20	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A
structural_annotation	UHGV-0188135_20	PF00929,PF00533,MF_00157,NF005289,COG0847	N/A	N/A	N/A	N/A
KOfam	UHGV-0188135_23	K22300	59.0	1.1e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-0188135_23	UniRef90_UPI000F0D19B9	54.7	0.0000000217	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0188135_23	345341.KUTG_05563	50.4	0.00000219	TRANSCRIPTIONal	N/A
Pfam	UHGV-0188135_23	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0188135_23	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0188135_23	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0188135_24	K22300	41.6	0.000000000023	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0188135_24	phrog_6499	120.0	1.1e-35	transcriptional regulator	transcription regulation
UniRef90	UHGV-0188135_24	UniRef90_G9YL68	140.0	1.5e-39	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0188135_24	742738.HMPREF9460_00847	140.0	1.76e-40	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0188135_24	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0188135_24	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-0188135_24	PF01381,MF_00535,NF040522,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0188135_26	PF21327	N/A	N/A	N/A	N/A
PHROG	UHGV-0188135_27	phrog_270	119.5	3.8e-35	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0188135_27	UniRef90_UPI001F170B82	182.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0188135_27	742738.HMPREF9460_00851	168.0	0	Helix-turn-helix domain	N/A
Pfam	UHGV-0188135_27	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0188135_27	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0188135_27	PF04182,NF040939,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-0188135_28	K02314	259.0	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0188135_28	phrog_19	227.6	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0188135_28	UniRef90_A0A1Y3ZTC3	294.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0188135_28	1226322.HMPREF1545_00095	284.0	0	DnaB-like helicase N terminal domain	N/A
Pfam	UHGV-0188135_28	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0188135_28	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0188135_28	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0188135_28	PF03796,PF00772,MF_04155,NF005240,COG0305	N/A	N/A	N/A	N/A
KOfam	UHGV-0188135_30	K03496	189.5	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0188135_30	phrog_164	148.3	5.1848e-44	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0188135_30	UniRef90_UPI000318E277	303.0	0	ParA family protein	N/A
eggNOG-mapper	UHGV-0188135_30	1007096.BAGW01000033_gene1614	294.0	0	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	N/A
Pfam	UHGV-0188135_30	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0188135_30	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0188135_30	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-0188135_31	K03497	76.6	5e-22	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0188135_31	phrog_27290	337.6	0	N/A	unknown function
UniRef90	UHGV-0188135_31	UniRef90_UPI0003130F10	306.0	0	ParB N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0188135_31	1007096.BAGW01000033_gene1613	306.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0188135_31	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0188135_31	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0188135_31	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0188135_37	phrog_38832	63.3	2.1e-18	N/A	unknown function
eggNOG-mapper	UHGV-0188135_37	665956.HMPREF1032_03087	51.6	0.00000522	N/A	N/A
PHROG	UHGV-0188135_42	phrog_3584	73.3	3.7e-21	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0188135_42	742738.HMPREF9460_04063	241.0	0	N/A	N/A
structural_annotation	UHGV-0188135_42	PF01446	N/A	N/A	N/A	N/A
UniRef90	UHGV-0188135_43	UniRef90_UPI001D014F8E	72.8	0.00000000000000121	cysteine-rich KTR domain-containing protein	N/A
eggNOG-mapper	UHGV-0188135_43	1226322.HMPREF1545_00110	67.4	0.0000000000000352	Cysteine-rich KTR	N/A
Pfam	UHGV-0188135_43	PF14205	N/A	N/A	Cysteine-rich KTR	Cys_rich_KTR
structural_annotation	UHGV-0188135_43	PF14205	N/A	N/A	N/A	N/A
PHROG	UHGV-0188135_44	phrog_119	71.6	1e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0188135_44	UniRef90_G9YSB5	149.0	1.4013e-44	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0188135_44	1235792.C808_00081	82.8	5.64e-19	HNH nucleases	N/A
Pfam	UHGV-0188135_44	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0188135_44	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0188135_45	phrog_5110	58.3	1.1e-16	terminase small subunit	head and packaging
UniRef90	UHGV-0188135_45	UniRef90_UPI00195E8788	127.0	2.66e-35	P27 family phage terminase small subunit	N/A
PHROG	UHGV-0188135_46	phrog_9	247.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0188135_46	UniRef90_UPI0018737C02	907.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0188135_46	1235792.C808_00083	605.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0188135_46	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0188135_46	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0188135_46	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0188135_46	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0188135_47	phrog_12	117.1	7.8e-35	portal protein	head and packaging
UniRef90	UHGV-0188135_47	UniRef90_G9YSB8	509.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-0188135_47	610130.Closa_0742	294.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0188135_47	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0188135_47	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0188135_47	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0188135_47	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0188135_48	K01358	129.2	4.5e-38	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0188135_48	phrog_94	244.7	0	head maturation protease	head and packaging
UniRef90	UHGV-0188135_48	UniRef90_A0A1Y4BT12	348.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0188135_48	349161.Dred_2605	300.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0188135_48	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0188135_48	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0188135_48	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0188135_49	phrog_10	137.4	1.6e-40	major head protein	head and packaging
UniRef90	UHGV-0188135_49	UniRef90_G9YSC0	690.0	0	Cadherin-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0188135_49	1235792.C808_00086	422.0	0	Phage capsid family	N/A
Pfam	UHGV-0188135_49	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0188135_49	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0188135_49	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0188135_49	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0188135_49	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A