UHGV-0188425 (vOTU-005989)

Viral Genome: UHGV-0188425

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0188425
vOTU ID	vOTU-005989
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_598213
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9827
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.98
Jumbo phage	No

Genome content
Genome length (bp)	36,240
GC content	57.25%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	69
CDS density	94%
Average CDS length (bps)	492.04
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0188425_3	phrog_14030	141.2	6.99949e-42	N/A	unknown function
UniRef90	UHGV-0188425_3	UniRef90_R6LL81	239.0	0	SLH domain-containing protein	N/A
eggNOG-mapper	UHGV-0188425_3	1121866.AUGK01000003_gene1444	90.1	6.09e-18	amidase activity	N/A
COG	UHGV-0188425_3	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
PHROG	UHGV-0188425_4	phrog_13256	66.7	1.9e-19	N/A	unknown function
eggNOG-mapper	UHGV-0188425_4	1226322.HMPREF1545_00132	72.8	5.16e-16	N/A	N/A
PHROG	UHGV-0188425_5	phrog_918	127.2	3.9e-38	N/A	unknown function
UniRef90	UHGV-0188425_5	UniRef90_UPI000F79A1D5	131.0	4.69e-38	N/A	N/A
eggNOG-mapper	UHGV-0188425_5	632112.C1KFI4_9CAUD	131.0	2.49e-38	N/A	N/A
Pfam	UHGV-0188425_5	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0188425_5	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-0188425_7	phrog_937	49.2	0.0000000000001	hemolysin	other
eggNOG-mapper	UHGV-0188425_7	1519439.JPJG01000023_gene533	55.1	0.000000016	N/A	N/A
structural_annotation	UHGV-0188425_9	PF14600	N/A	N/A	N/A	N/A
UniRef90	UHGV-0188425_11	UniRef90_A0A411ZUM8	175.0	0	Leucine-rich repeat domain-containing protein	N/A
eggNOG-mapper	UHGV-0188425_11	471875.RUMLAC_02240	147.0	8.6e-37	dockerin type I repeat-containing domain protein	N/A
Pfam	UHGV-0188425_11	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
COG	UHGV-0188425_11	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0188425_11	PF13306,NF041351	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0188425_13	PF16408,NF033510	N/A	N/A	N/A	N/A
PHROG	UHGV-0188425_14	phrog_10898	280.6	0	N/A	unknown function
UniRef90	UHGV-0188425_14	UniRef90_A0A7U3NJT3	187.0	0	Putative Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0188425_14	717606.PaecuDRAFT_2136	75.1	0.000000000000891	S-layer homology domain	N/A
COG	UHGV-0188425_14	COG1520	N/A	N/A	Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat	N/A
structural_annotation	UHGV-0188425_14	PF19081,PF15418,MF_01905,NF032891,COG3291	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0188425_16	PF10651	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0188425_17	PF18614,MF_00085,NF003076	N/A	N/A	N/A	N/A
PHROG	UHGV-0188425_18	phrog_26795	127.6	7.1e-38	N/A	unknown function
UniRef90	UHGV-0188425_18	UniRef90_A0A5J6T4K8	134.0	3.01e-32	Minor tail protein	N/A
eggNOG-mapper	UHGV-0188425_18	1195236.CTER_5102	134.0	3.49e-33	N/A	N/A
structural_annotation	UHGV-0188425_18	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0188425_19	phrog_37549	80.4	2.4e-27	virion structural protein	head and packaging
UniRef90	UHGV-0188425_19	UniRef90_A0A3D0W045	237.0	0	Fibronectin type-III domain-containing protein	N/A
eggNOG-mapper	UHGV-0188425_19	1195236.CTER_5103	127.0	1.01e-27	N/A	N/A
structural_annotation	UHGV-0188425_19	PF02010,PF06848,PF19266,MF_04116,NF033679,NF032891,TIGR01633,TIGR04488,COG3401,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0188425_20	phrog_33680	148.7	3.36312e-44	N/A	unknown function
UniRef90	UHGV-0188425_20	UniRef90_UPI00098F054B	210.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0188425_20	498761.HM1_2969	199.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0188425_20	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0188425_20	TIGR01760,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0188425_21	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0188425_22	phrog_88	84.7	1.1e-24	major tail protein	tail
UniRef90	UHGV-0188425_22	UniRef90_S0FUN2	114.0	1.33e-28	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0188425_22	1195236.CTER_5106	114.0	2.23e-29	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0188425_22	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0188425_22	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0188425_22	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0188425_23	phrog_5	45.1	0.0000000000021	tail completion or Neck1 protein	connector
structural_annotation	UHGV-0188425_23	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0188425_24	1487921.DP68_11350	59.7	0.000000000395	N/A	N/A
structural_annotation	UHGV-0188425_24	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0188425_25	phrog_1951	76.2	3e-22	head-tail adaptor	connector
UniRef90	UHGV-0188425_25	UniRef90_UPI001B02B074	64.7	0.0000000000183	phage head closure protein	N/A
eggNOG-mapper	UHGV-0188425_25	1094508.Tsac_2422	55.5	0.0000000143	Phage head-tail joining protein	N/A
Pfam	UHGV-0188425_25	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0188425_25	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0188425_25	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0188425_25	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0188425_26	phrog_5223	46.2	0.00000000000064	neck protein	connector
UniRef90	UHGV-0188425_26	UniRef90_B6W9Y5	61.2	0.000000000363	Putative phage DNA packaging protein	N/A
eggNOG-mapper	UHGV-0188425_26	561177.ANHYDRO_01411	61.2	0.0000000000609	N/A	N/A
PHROG	UHGV-0188425_27	phrog_10	182.9	0	major head protein	head and packaging
UniRef90	UHGV-0188425_27	UniRef90_UPI00189AE5FE	407.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0188425_27	1280689.AUJC01000011_gene1521	391.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0188425_27	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0188425_27	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0188425_27	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0188425_27	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0188425_28	K01358	133.2	3e-39	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0188425_28	phrog_94	198.8	0	head maturation protease	head and packaging
UniRef90	UHGV-0188425_28	UniRef90_UPI0018979DC8	205.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0188425_28	1280689.AUJC01000011_gene1520	186.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0188425_28	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0188425_28	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0188425_28	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0188425_29	phrog_12	180.3	0	portal protein	head and packaging
UniRef90	UHGV-0188425_29	UniRef90_UPI001898FCCE	506.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0188425_29	626523.GCWU000342_01027	504.0	0	Portal protein	N/A
Pfam	UHGV-0188425_29	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0188425_29	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0188425_29	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0188425_30	phrog_9	378.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0188425_30	UniRef90_A0A1Y3W5R1	785.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0188425_30	1203606.HMPREF1526_00981	730.0	0	Terminase	N/A
Pfam	UHGV-0188425_30	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0188425_30	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0188425_30	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0188425_30	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0188425_31	phrog_1066	129.7	1e-38	N/A	unknown function
eggNOG-mapper	UHGV-0188425_31	1341151.ASZU01000004_gene265	120.0	1.53e-33	N/A	N/A
structural_annotation	UHGV-0188425_31	PF05119,TIGR01558	N/A	N/A	N/A	N/A
PHROG	UHGV-0188425_32	phrog_119	49.1	0.000000000000078	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0188425_32	UniRef90_A0A174XSZ8	124.0	1.18e-34	Prophage LambdaBa04, GP54	N/A
eggNOG-mapper	UHGV-0188425_32	1235793.C809_01915	117.0	2e-32	HNH endonuclease	N/A
Pfam	UHGV-0188425_32	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0188425_32	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
eggNOG-mapper	UHGV-0188425_33	1297617.JPJD01000059_gene2640	84.7	3.61e-19	N/A	N/A
structural_annotation	UHGV-0188425_33	PF06530,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0188425_34	phrog_3584	112.2	4.5e-33	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0188425_34	537013.CLOSTMETH_02141	73.6	0.00000000000035	N/A	N/A
structural_annotation	UHGV-0188425_34	PF21578,MF_00360	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0188425_40	PF10013	N/A	N/A	N/A	N/A
PHROG	UHGV-0188425_41	phrog_190	103.3	2.4e-30	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0188425_41	UniRef90_UPI0006C2AC63	132.0	1.89e-36	N/A	N/A
eggNOG-mapper	UHGV-0188425_41	1226322.HMPREF1545_00295	120.0	1.67e-32	N/A	N/A
Pfam	UHGV-0188425_41	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0188425_41	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-0188425_47	phrog_38832	61.8	6.5e-18	N/A	unknown function
eggNOG-mapper	UHGV-0188425_47	1232443.BAIA02000078_gene48	119.0	2.67e-33	N/A	N/A
structural_annotation	UHGV-0188425_47	PF09871,COG4014	N/A	N/A	N/A	N/A
KOfam	UHGV-0188425_48	K00571	169.5	0	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0188425_48	phrog_67	167.6	0	DNA methyltransferase	other
UniRef90	UHGV-0188425_48	UniRef90_A0A401IT16	197.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0188425_48	1327981.R9ZYG2_9CAUD	174.0	0	helicase activity	N/A
PADLOC	UHGV-0188425_48	MTase_II_00157	125.8	9.1e-40	Type II methyltransferase	RM
Pfam	UHGV-0188425_48	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
UniRef90	UHGV-0188425_49	UniRef90_A0A1C5YXG3	185.0	0	Radical SAM superfamily	N/A
eggNOG-mapper	UHGV-0188425_49	742738.HMPREF9460_03770	181.0	0	radical SAM domain protein	N/A
COG	UHGV-0188425_49	COG1032	N/A	N/A	Radical SAM superfamily enzyme YgiQ, UPF0313 family	N/A
structural_annotation	UHGV-0188425_53	PF05082	N/A	N/A	N/A	N/A
PHROG	UHGV-0188425_58	phrog_478	134.6	3.3e-40	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0188425_58	UniRef90_A0A373Q857	164.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0188425_58	1111121.HMPREF1247_0834	100.0	2.54e-25	N/A	N/A
eggNOG-mapper	UHGV-0188425_59	642492.Clole_0961	67.0	0.0000000000000878	N/A	N/A
structural_annotation	UHGV-0188425_59	PF12286	N/A	N/A	N/A	N/A
KOfam	UHGV-0188425_63	K22300	50.7	0.000000000000042	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0188425_63	phrog_2967	48.6	0.00000000000011	transcriptional regulator	transcription regulation
UniRef90	UHGV-0188425_63	UniRef90_A0A1Y4L0A2	125.0	1.07e-34	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0188425_63	1235797.C816_03553	97.4	8.64e-24	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0188425_63	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0188425_63	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0188425_63	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0188425_65	phrog_10292	74.2	1.1e-21	N/A	unknown function
UniRef90	UHGV-0188425_65	UniRef90_A0A416W984	95.9	9.04e-23	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0188425_65	537013.CLOSTMETH_02269	80.5	3.89e-17	TM2 domain	N/A
Pfam	UHGV-0188425_65	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-0188425_65	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-0188425_65	COG2314	N/A	N/A	N/A	N/A
Pfam	UHGV-0188425_66	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0188425_66	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0188425_66	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0188425_67	K06400	371.7	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0188425_67	phrog_95	364.9	0	integrase	integration and excision
UniRef90	UHGV-0188425_67	UniRef90_UPI00189960B8	498.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0188425_67	1235835.C814_00825	404.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0188425_67	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0188425_67	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0188425_67	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0188425_67	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0188425_67	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-0188425_68	UniRef90_A0A7M1RTM1	73.2	0.000000000000471	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0188425_68	1378168.N510_03079	57.8	0.0000000844	N/A	N/A