UHGV-0189531 (vOTU-137138)

Viral Genome: UHGV-0189531

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0189531
vOTU ID	vOTU-137138
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMEA2737811_a1_ct78871_vs1@Siphoviridae__sp._ctq6v1
Associated BioSample	SAMEA2737811
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.02 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.98
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.28
Jumbo phage	No

Genome content
Genome length (bp)	25,813
GC content	61.84%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	38
CDS density	92%
Average CDS length (bps)	622.90
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 75.02)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0189531_1	phrog_428	47.4	0.00000000000038	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0189531_1	UniRef90_UPI001EE1549C	148.0	2.54994e-41	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0189531_1	1226322.HMPREF1545_00094	119.0	2.15e-31	DnaD domain protein	N/A
Pfam	UHGV-0189531_1	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0189531_1	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
PHROG	UHGV-0189531_3	phrog_6058	41.7	0.000000000013	N/A	unknown function
eggNOG-mapper	UHGV-0189531_3	742738.HMPREF9460_00848	102.0	1.4e-26	N/A	N/A
structural_annotation	UHGV-0189531_3	PF12728,TIGR01764	N/A	N/A	N/A	N/A
KOfam	UHGV-0189531_8	K18830	50.2	0.000000000000049	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
UniRef90	UHGV-0189531_8	UniRef90_UPI001D061BC2	120.0	9.59e-33	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0189531_8	1235797.C816_03553	97.8	8.11e-24	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0189531_8	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0189531_8	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0189531_8	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0189531_10	phrog_38135	61.8	6.7e-18	N/A	unknown function
eggNOG-mapper	UHGV-0189531_10	411459.RUMOBE_03713	61.6	0.000000095	Metallo-beta-lactamase superfamily	N/A
Pfam	UHGV-0189531_10	PF14020	N/A	N/A	N/A	DUF4236
COG	UHGV-0189531_10	COG2333	N/A	N/A	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	N/A
structural_annotation	UHGV-0189531_10	PF14020,PF21602	N/A	N/A	N/A	N/A
KOfam	UHGV-0189531_11	K14059	101.2	1.7e-29	int; integrase	N/A
PHROG	UHGV-0189531_11	phrog_1	143.6	1.69978e-42	integrase	integration and excision
UniRef90	UHGV-0189531_11	UniRef90_A0A3D4D8C4	355.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0189531_11	693746.OBV_19730	346.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0189531_11	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0189531_11	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0189531_11	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0189531_12	1378168.N510_03079	105.0	5.02e-25	N/A	N/A
eggNOG-mapper	UHGV-0189531_13	1408437.JNJN01000043_gene802	156.0	0	N/A	N/A
PHROG	UHGV-0189531_14	phrog_16490	190.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0189531_14	1408437.JNJN01000043_gene803	166.0	0	N/A	N/A
eggNOG-mapper	UHGV-0189531_16	445972.ANACOL_01878	74.7	0.00000000000000704	N/A	N/A
Pfam	UHGV-0189531_17	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
structural_annotation	UHGV-0189531_17	PF04545,MF_00245,NF001067,COG2771	N/A	N/A	N/A	N/A
KOfam	UHGV-0189531_18	K01447	63.4	4.1e-18	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0189531_18	phrog_15001	157.2	0	endolysin	lysis
UniRef90	UHGV-0189531_18	UniRef90_UPI001EE14AF5	434.0	0	peptidoglycan recognition protein family protein	N/A
eggNOG-mapper	UHGV-0189531_18	552398.HMPREF0866_01156	301.0	0	Ami_2	N/A
Pfam	UHGV-0189531_18	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0189531_18	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0189531_18	PF01510,MF_04111,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0189531_20	phrog_1129	67.7	1.2e-19	holin	lysis
UniRef90	UHGV-0189531_20	UniRef90_UPI001EDED0D7	136.0	2.9e-40	phage holin family protein	N/A
eggNOG-mapper	UHGV-0189531_20	1007096.BAGW01000036_gene2663	123.0	1.26e-35	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0189531_20	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0189531_20	PF06946	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0189531_22	1408437.JNJN01000040_gene189	64.3	0.00000000000692	N/A	N/A
UniRef90	UHGV-0189531_23	UniRef90_A0A417BX67	105.0	1.27e-21	Chitin-binding type-3 domain-containing protein	N/A
structural_annotation	UHGV-0189531_23	PF03426,TIGR04362	N/A	N/A	N/A	N/A
PHROG	UHGV-0189531_24	phrog_32744	359.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0189531_24	1120998.AUFC01000030_gene2247	204.0	0	N/A	N/A
structural_annotation	UHGV-0189531_24	PF14594,PF21722,NF033848,COG4379	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0189531_25	411902.CLOBOL_00125	79.3	3.96e-17	N/A	N/A
structural_annotation	UHGV-0189531_25	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0189531_26	phrog_23464	266.5	0	N/A	unknown function
UniRef90	UHGV-0189531_26	UniRef90_A0A318XNK8	210.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-0189531_26	1211814.CAPG01000074_gene3445	189.0	0	Phage tail tape measure protein TP901	N/A
COG	UHGV-0189531_26	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0189531_26	PF20155,TIGR02971,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0189531_27	phrog_3033	49.3	0.000000000000062	N/A	unknown function
eggNOG-mapper	UHGV-0189531_27	411489.CLOL250_01719	70.5	0.00000000000000276	N/A	N/A
PHROG	UHGV-0189531_28	phrog_709	91.8	5.9e-27	N/A	unknown function
eggNOG-mapper	UHGV-0189531_28	1410670.JHXF01000015_gene2298	125.0	1.7e-35	N/A	N/A
structural_annotation	UHGV-0189531_28	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0189531_29	phrog_88	165.2	0	major tail protein	tail
UniRef90	UHGV-0189531_29	UniRef90_UPI001031AF27	228.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0189531_29	483218.BACPEC_01314	201.0	0	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0189531_29	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0189531_29	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0189531_30	phrog_78	40.5	0.000000000049	tail terminator	connector
UniRef90	UHGV-0189531_30	UniRef90_F2BRF4	73.9	0.00000000000000535	Prophage pi2 protein 38	N/A
eggNOG-mapper	UHGV-0189531_30	1154860.SAG0136_05785	81.3	1.3e-18	N/A	N/A
structural_annotation	UHGV-0189531_30	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
PHROG	UHGV-0189531_31	phrog_5	46.0	0.0000000000013	tail completion or Neck1 protein	connector
UniRef90	UHGV-0189531_31	UniRef90_UPI000428028A	79.3	2.3e-16	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0189531_31	1280671.AUJH01000012_gene3146	79.3	3.86e-17	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0189531_31	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0189531_31	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0189531_32	phrog_19734	65.3	1.1e-18	N/A	unknown function
eggNOG-mapper	UHGV-0189531_33	908340.HMPREF9406_2576	55.5	0.00000000753	N/A	N/A
PHROG	UHGV-0189531_34	phrog_10	173.3	0	major head protein	head and packaging
UniRef90	UHGV-0189531_34	UniRef90_UPI001E346EE7	412.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0189531_34	913865.DOT_5633	325.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0189531_34	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0189531_34	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0189531_34	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0189531_34	COG2273	N/A	N/A	Beta-glucanase, GH16 family	N/A
structural_annotation	UHGV-0189531_34	PF05065,PF18316,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0189531_35	K06904	163.8	0	N/A	N/A
PHROG	UHGV-0189531_35	phrog_80	181.1	0	head maturation protease	head and packaging
UniRef90	UHGV-0189531_35	UniRef90_A0A3D1VA27	224.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0189531_35	1235798.C817_04584	207.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0189531_35	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0189531_35	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0189531_35	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0189531_35	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0189531_36	phrog_12	178.9	0	portal protein	head and packaging
UniRef90	UHGV-0189531_36	UniRef90_A0A1F2PE41	459.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0189531_36	1235798.C817_04583	448.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0189531_36	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0189531_36	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0189531_36	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0189531_36	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0189531_37	K00571	122.3	5.1e-36	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0189531_37	phrog_67	125.1	5.6e-37	DNA methyltransferase	other
UniRef90	UHGV-0189531_37	UniRef90_UPI00156E2B02	201.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0189531_37	1423758.BN55_09485	197.0	0	DNA methylase	N/A
PADLOC	UHGV-0189531_37	MTase_II_00037	119.0	0	Type II methyltransferase	RM
Pfam	UHGV-0189531_37	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0189531_37	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0189531_37	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0189531_38	phrog_9	269.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0189531_38	UniRef90_A0A3D1VAR5	755.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0189531_38	1226322.HMPREF1545_00113	696.0	0	Phage Terminase	N/A
Pfam	UHGV-0189531_38	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
Pfam	UHGV-0189531_38	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0189531_38	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0189531_38	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A