UHGV-0190404 (vOTU-102102)

Viral Genome: UHGV-0190404

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0190404
vOTU ID	vOTU-102102
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMEA2737832_a1_ct86534_vs1@Siphoviridae__sp._ctSCn1
Associated BioSample	SAMEA2737832
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.63 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.98
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	10.84
Jumbo phage	No

Genome content
Genome length (bp)	21,408
GC content	54.40%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	37
CDS density	93%
Average CDS length (bps)	537.49
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 50.63)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0190404_2	phrog_544	137.5	8.90007e-41	major head protein	head and packaging
UniRef90	UHGV-0190404_2	UniRef90_R0BKA1	434.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0190404_2	476272.RUMHYD_01776	321.0	0	N/A	N/A
structural_annotation	UHGV-0190404_2	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0190404_4	phrog_17977	42.7	0.0000000000079	N/A	unknown function
UniRef90	UHGV-0190404_4	UniRef90_A0A844DHJ8	122.0	2e-33	Phage head closure protein	N/A
structural_annotation	UHGV-0190404_4	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0190404_5	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-0190404_6	phrog_885	67.7	1.3e-19	major tail protein	tail
eggNOG-mapper	UHGV-0190404_6	1111121.HMPREF1247_0789	150.0	2.28412e-43	N/A	N/A
structural_annotation	UHGV-0190404_6	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0190404_9	phrog_9959	99.8	1.6e-29	tail length tape measure protein	tail
UniRef90	UHGV-0190404_9	UniRef90_UPI001C038824	456.0	0	tape measure protein	N/A
eggNOG-mapper	UHGV-0190404_9	411470.RUMGNA_02228	147.0	4.73e-34	tape measure	N/A
Pfam	UHGV-0190404_9	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0190404_9	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0190404_9	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0190404_9	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
UniRef90	UHGV-0190404_10	UniRef90_A0A415UCK7	89.4	9.63e-19	MtfA protein	N/A
eggNOG-mapper	UHGV-0190404_10	1111121.HMPREF1247_1241	95.9	5.78e-22	N/A	N/A
structural_annotation	UHGV-0190404_10	PF05709,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0190404_11	phrog_3558	192.3	0	tail protein	tail
UniRef90	UHGV-0190404_11	UniRef90_A0A8B3ALT8	159.0	4.97e-38	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0190404_11	411460.RUMTOR_00484	161.0	1.83e-39	Prophage endopeptidase tail	N/A
Pfam	UHGV-0190404_11	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-0190404_11	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0190404_11	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0190404_13	phrog_19280	73.0	3.1e-21	N/A	unknown function
UniRef90	UHGV-0190404_13	UniRef90_A0A844DHL3	654.0	0	N/A	N/A
eggNOG-mapper	UHGV-0190404_13	1160721.RBI_I01569	133.0	1.13e-31	N/A	N/A
Pfam	UHGV-0190404_13	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0190404_13	PF19789	N/A	N/A	N/A	N/A
UniRef90	UHGV-0190404_15	UniRef90_A0A844DDG4	53.5	0.0000000189	XkdX family protein	N/A
Pfam	UHGV-0190404_15	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
structural_annotation	UHGV-0190404_15	PF09693,TIGR01669	N/A	N/A	N/A	N/A
UniRef90	UHGV-0190404_16	UniRef90_A0A3D4VZ42	55.1	0.00000000835	Endolysin (Fragment)	N/A
eggNOG-mapper	UHGV-0190404_16	411483.FAEPRAA2165_00002	53.5	0.0000000627	hydrolase, family 25	N/A
COG	UHGV-0190404_16	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
KOfam	UHGV-0190404_17	K07273	158.4	0	acm; lysozyme	N/A
PHROG	UHGV-0190404_17	phrog_291	121.6	7.3e-36	endolysin	lysis
UniRef90	UHGV-0190404_17	UniRef90_A0A564U0D3	393.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0190404_17	718252.FP2_04890	254.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0190404_17	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0190404_17	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0190404_17	PF01183,TIGR04053,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0190404_19	phrog_15303	74.9	8.4e-22	N/A	unknown function
KOfam	UHGV-0190404_22	K23779	55.7	0.0000000000000012	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-0190404_22	phrog_1373	42.0	0.000000000009	transcriptional regulator	transcription regulation
Pfam	UHGV-0190404_22	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0190404_22	COG1309	N/A	N/A	DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA	N/A
structural_annotation	UHGV-0190404_22	PF01381,TIGR03070,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0190404_24	phrog_3754	91.0	1.2e-26	N/A	unknown function
eggNOG-mapper	UHGV-0190404_24	1485543.JMME01000025_gene2462	102.0	5.62e-27	N/A	N/A
PHROG	UHGV-0190404_25	phrog_21718	116.3	2.2e-34	N/A	unknown function
eggNOG-mapper	UHGV-0190404_25	397290.C810_05210	97.4	1.68e-23	N/A	N/A
PHROG	UHGV-0190404_26	phrog_22984	79.9	8.6e-24	N/A	unknown function
PHROG	UHGV-0190404_27	phrog_16490	161.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0190404_27	1408437.JNJN01000043_gene803	123.0	1.61e-31	N/A	N/A
PHROG	UHGV-0190404_28	phrog_20016	205.8	0	N/A	unknown function
UniRef90	UHGV-0190404_28	UniRef90_A0A285PT46	228.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0190404_28	1226322.HMPREF1545_00077	187.0	0	N/A	N/A
structural_annotation	UHGV-0190404_28	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0190404_29	476272.RUMHYD_01772	50.4	0.00000944	N/A	N/A
structural_annotation	UHGV-0190404_29	PF12510	N/A	N/A	N/A	N/A
KOfam	UHGV-0190404_31	K14059	139.7	3.30006e-41	int; integrase	N/A
PHROG	UHGV-0190404_31	phrog_1	167.2	0	integrase	integration and excision
UniRef90	UHGV-0190404_31	UniRef90_A0A6N7TNQ4	713.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0190404_31	411471.SUBVAR_05137	264.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0190404_31	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0190404_31	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0190404_31	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0190404_32	UniRef90_A0A6N7TLT0	204.0	0	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0190404_32	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0190404_32	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0190404_35	321955.AAGP01000017_gene2211	64.7	0.000000000159	N/A	N/A
structural_annotation	UHGV-0190404_35	PF16900,NF040991	N/A	N/A	N/A	N/A