UHGV-0190486 (vOTU-134503)

Viral Genome: UHGV-0190486

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0190486
vOTU ID	vOTU-134503
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_594820
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.2 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9778
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.92
Jumbo phage	No

Genome content
Genome length (bp)	36,988
GC content	56.42%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	60
CDS density	96%
Average CDS length (bps)	588.90
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 88.2)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0190486_1	phrog_19111	88.2	7e-26	N/A	unknown function
eggNOG-mapper	UHGV-0190486_1	1297617.JPJD01000034_gene670	58.5	0.000000197	N/A	N/A
PHROG	UHGV-0190486_2	phrog_134	56.1	5.1e-16	N/A	unknown function
UniRef90	UHGV-0190486_2	UniRef90_A0A7X9H6W0	73.6	1.51e-16	XkdX family protein	N/A
eggNOG-mapper	UHGV-0190486_2	697281.Mahau_0596	66.6	0.0000000000000139	Phage uncharacterised protein (Phage_XkdX)	N/A
Pfam	UHGV-0190486_2	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
structural_annotation	UHGV-0190486_2	PF09693,TIGR01669	N/A	N/A	N/A	N/A
UniRef90	UHGV-0190486_3	UniRef90_R6HCD7	130.0	2.88e-37	RNA binding protein Jsn1 putative	N/A
PHROG	UHGV-0190486_4	phrog_1419	93.2	1.2e-29	tail protein	tail
eggNOG-mapper	UHGV-0190486_4	742823.HMPREF9465_00923	123.0	1.71e-26	Membrane	N/A
Pfam	UHGV-0190486_4	PF11839	N/A	N/A	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
COG	UHGV-0190486_4	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
PHROG	UHGV-0190486_5	phrog_1396	44.6	0.0000000000026	tail fiber protein	tail
UniRef90	UHGV-0190486_5	UniRef90_UPI0013F616D1	412.0	0	short-chain fatty acid transporter	N/A
eggNOG-mapper	UHGV-0190486_5	762966.HMPREF9439_01055	320.0	0	tail collar domain protein	N/A
COG	UHGV-0190486_5	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0190486_5	PF14600	N/A	N/A	N/A	N/A
PHROG	UHGV-0190486_6	phrog_587	92.2	4.1e-28	structural protein	head and packaging
UniRef90	UHGV-0190486_6	UniRef90_UPI0013F5E2B1	254.0	0	N/A	N/A
eggNOG-mapper	UHGV-0190486_6	742823.HMPREF9465_00926	250.0	0	N/A	N/A
Pfam	UHGV-0190486_6	PF11041	N/A	N/A	N/A	DUF2612
structural_annotation	UHGV-0190486_6	PF11041,TIGR02242,COG3948	N/A	N/A	N/A	N/A
PHROG	UHGV-0190486_7	phrog_6	157.3	0	baseplate protein	tail
UniRef90	UHGV-0190486_7	UniRef90_K1KI67	532.0	0	Baseplate_J domain-containing protein	N/A
eggNOG-mapper	UHGV-0190486_7	742823.HMPREF9465_00927	532.0	0	Baseplate J-like protein	N/A
Pfam	UHGV-0190486_7	PF04865	N/A	N/A	Baseplate J-like protein	Baseplate_J
COG	UHGV-0190486_7	COG3299	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0190486_7	PF04865,MF_04102,TIGR02243,COG3299	N/A	N/A	N/A	N/A
PHROG	UHGV-0190486_8	phrog_120	62.5	6.3e-18	baseplate protein	tail
eggNOG-mapper	UHGV-0190486_8	1203554.HMPREF1476_01519	73.9	0.00000000000000218	N/A	N/A
structural_annotation	UHGV-0190486_8	PF10761,TIGR03357,COG3628	N/A	N/A	N/A	N/A
PHROG	UHGV-0190486_9	phrog_3216	49.4	0.000000000000071	baseplate assembly protein	tail
UniRef90	UHGV-0190486_9	UniRef90_K1JIF5	231.0	0	Phage_spike domain-containing protein	N/A
eggNOG-mapper	UHGV-0190486_9	742823.HMPREF9465_00928	231.0	0	Baseplate assembly protein	N/A
Pfam	UHGV-0190486_9	PF18715	N/A	N/A	Phage spike trimer	Phage_spike
COG	UHGV-0190486_9	COG4540	N/A	N/A	Phage P2 baseplate assembly protein gpV	N/A
structural_annotation	UHGV-0190486_9	PF18352,TIGR01644,COG4384	N/A	N/A	N/A	N/A
PHROG	UHGV-0190486_10	phrog_196	105.8	5.4e-31	virion structural protein	head and packaging
UniRef90	UHGV-0190486_10	UniRef90_F3QJE9	228.0	0	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0190486_10	469610.HMPREF0189_01203	242.0	0	N/A	N/A
structural_annotation	UHGV-0190486_10	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0190486_11	phrog_349	41.3	0.000000000024	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0190486_11	1236501.BAJU01000020_gene2009	49.3	0.00000317	N/A	N/A
PHROG	UHGV-0190486_12	phrog_1830	72.3	6e-21	N/A	unknown function
UniRef90	UHGV-0190486_12	UniRef90_F3QJE7	83.6	4.91e-17	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0190486_12	469610.HMPREF0189_01201	89.0	6.92e-20	N/A	N/A
structural_annotation	UHGV-0190486_12	PF21821,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0190486_13	phrog_58	64.0	2e-18	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0190486_13	742823.HMPREF9465_00932	138.0	8.75e-32	domain protein	N/A
COG	UHGV-0190486_13	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0190486_14	phrog_1932	52.3	0.0000000000000063	tail assembly chaperone	tail
eggNOG-mapper	UHGV-0190486_14	742823.HMPREF9465_00933	91.3	1.12e-21	N/A	N/A
Pfam	UHGV-0190486_14	PF21822	N/A	N/A	Phage tail assembly chaperone protein, TAC	Phage_TAC_15
structural_annotation	UHGV-0190486_14	PF21822	N/A	N/A	N/A	N/A
PHROG	UHGV-0190486_15	phrog_1964	101.8	5.9e-30	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0190486_15	762966.HMPREF9439_01045	101.0	1.82e-25	N/A	N/A
structural_annotation	UHGV-0190486_15	PF11681,TIGR01603,COG3157	N/A	N/A	N/A	N/A
PHROG	UHGV-0190486_16	phrog_205	163.6	0	virion structural protein	head and packaging
UniRef90	UHGV-0190486_16	UniRef90_UPI0013F5A4D1	514.0	0	N/A	N/A
eggNOG-mapper	UHGV-0190486_16	742823.HMPREF9465_00935	497.0	0	N/A	N/A
Pfam	UHGV-0190486_16	PF11863	N/A	N/A	N/A	DUF3383
structural_annotation	UHGV-0190486_16	PF11863,COG4386	N/A	N/A	N/A	N/A
PHROG	UHGV-0190486_17	phrog_1876	78.2	9.1e-23	N/A	unknown function
eggNOG-mapper	UHGV-0190486_17	762966.HMPREF9439_01041	107.0	7.11e-27	N/A	N/A
structural_annotation	UHGV-0190486_17	PF16807	N/A	N/A	N/A	N/A
PHROG	UHGV-0190486_18	phrog_1912	46.3	0.00000000000063	head protein	head and packaging
eggNOG-mapper	UHGV-0190486_18	762966.HMPREF9439_01040	113.0	5.02e-30	N/A	N/A
structural_annotation	UHGV-0190486_18	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0190486_19	phrog_222	101.9	6.4e-30	tail protein	tail
UniRef90	UHGV-0190486_19	UniRef90_A0A6J5RNL9	63.5	0.00000000079	Bacteriophage HK97-gp10, putative tail-component	N/A
eggNOG-mapper	UHGV-0190486_19	1205683.CAKR01000013_gene1186	71.6	0.000000000000127	N/A	N/A
PHROG	UHGV-0190486_20	phrog_302	72.1	6.4e-21	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0190486_20	469610.HMPREF0189_01191	101.0	1.85e-25	N/A	N/A
Pfam	UHGV-0190486_20	PF13262	N/A	N/A	N/A	DUF4054
structural_annotation	UHGV-0190486_20	PF13262	N/A	N/A	N/A	N/A
PHROG	UHGV-0190486_22	phrog_264	161.2	0	major head protein	head and packaging
UniRef90	UHGV-0190486_22	UniRef90_UPI0010350299	264.0	0	N/A	N/A
eggNOG-mapper	UHGV-0190486_22	1205683.CAKR01000013_gene1189	264.0	0	Protein conserved in bacteria	N/A
Pfam	UHGV-0190486_22	PF09950	N/A	N/A	N/A	DUF2184
COG	UHGV-0190486_22	COG4834	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0190486_22	PF09950,MF_04119,NF041155,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0190486_23	phrog_2122	77.3	1.8e-22	minor head protein	head and packaging
eggNOG-mapper	UHGV-0190486_23	1408428.JNJP01000012_gene1116	65.9	0.0000000000806	N/A	N/A
KOfam	UHGV-0190486_24	K09960	275.6	0	N/A	N/A
PHROG	UHGV-0190486_24	phrog_2229	315.3	0	head maturation protease	head and packaging
UniRef90	UHGV-0190486_24	UniRef90_UPI001E52763D	229.0	0	N/A	N/A
eggNOG-mapper	UHGV-0190486_24	1408428.JNJP01000012_gene1115	216.0	0	N/A	N/A
Pfam	UHGV-0190486_24	PF09979	N/A	N/A	N/A	DUF2213
COG	UHGV-0190486_24	COG3566	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0190486_24	PF09979,TIGR01543,COG3566	N/A	N/A	N/A	N/A
PHROG	UHGV-0190486_25	phrog_324	168.0	0	head morphogenesis	head and packaging
UniRef90	UHGV-0190486_25	UniRef90_A0A1Y4CYL3	199.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0190486_25	1408428.JNJP01000012_gene1114	219.0	0	protein homolog of phage Mu protein gp30	N/A
Pfam	UHGV-0190486_25	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0190486_25	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0190486_25	PF06152,TIGR01641,COG2369	N/A	N/A	N/A	N/A
KOfam	UHGV-0190486_26	K09961	340.2	0	N/A	N/A
PHROG	UHGV-0190486_26	phrog_146	279.7	0	portal protein	head and packaging
UniRef90	UHGV-0190486_26	UniRef90_UPI001D0BAEDD	325.0	0	N/A	N/A
eggNOG-mapper	UHGV-0190486_26	1408428.JNJP01000012_gene1113	324.0	0	N/A	N/A
Pfam	UHGV-0190486_26	PF06381	N/A	N/A	Anti-CBASS protein Acb1-like	Abc1-like
COG	UHGV-0190486_26	COG3567	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0190486_26	PF06381,MF_04135,TIGR01555,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0190486_27	K06909	366.5	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0190486_27	phrog_3717	244.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0190486_27	UniRef90_A0A139K4Q1	569.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0190486_27	556268.OFAG_00321	464.0	0	Terminase RNAseH like domain	N/A
Pfam	UHGV-0190486_27	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0190486_27	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0190486_27	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0190486_27	COG1783	N/A	N/A	Phage terminase large subunit	N/A
PHROG	UHGV-0190486_28	phrog_309	57.2	8.9e-17	terminase small subunit	head and packaging
UniRef90	UHGV-0190486_28	UniRef90_UPI001F4FD8EF	120.0	4.92e-33	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0190486_28	742823.HMPREF9465_00949	131.0	1.19e-37	N/A	N/A
structural_annotation	UHGV-0190486_28	PF13022	N/A	N/A	N/A	N/A
UniRef90	UHGV-0190486_29	UniRef90_U2IUE8	51.2	0.00000068	6-carboxy-5,6,7,8-tetrahydropterin synthase	N/A
eggNOG-mapper	UHGV-0190486_29	1175654.A0A0S0MVM4_9CAUD	66.6	0.00000000000052	6-pyruvoyl tetrahydropterin synthase	N/A
KOfam	UHGV-0190486_30	K03497	50.5	0.000000000000044	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0190486_30	phrog_620	109.2	4.2e-32	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0190486_30	UniRef90_A0A454TG32	125.0	9.13e-35	DNA modification methylase (Fragment)	N/A
eggNOG-mapper	UHGV-0190486_30	742823.HMPREF9465_00951	141.0	2.01997e-41	ParB-like nuclease domain	N/A
PADLOC	UHGV-0190486_30	MTase_II_00015	70.1	4.7e-20	Type II methyltransferase	RM
Pfam	UHGV-0190486_30	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0190486_30	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0190486_31	PF06530,NF008895,COG1595	N/A	N/A	N/A	N/A
KOfam	UHGV-0190486_32	K01160	45.6	0.0000000000019	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0190486_32	phrog_140	124.8	5.5e-37	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0190486_32	UniRef90_A0A3B9Q6M1	104.0	7.04e-26	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0190486_32	279238.Saro_3008	95.5	2.79e-23	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0190486_32	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0190486_32	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0190486_32	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0190486_35	COG3201	N/A	N/A	N/A	N/A
KOfam	UHGV-0190486_39	K17680	137.1	1.2e-40	PEO1; twinkle protein [EC:5.6.2.3]	N/A
PHROG	UHGV-0190486_39	phrog_5482	168.5	0	N/A	unknown function
UniRef90	UHGV-0190486_39	UniRef90_A0A643FF24	197.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0190486_39	398578.Daci_1933	184.0	0	DnaB-like helicase C terminal domain	N/A
Pfam	UHGV-0190486_39	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0190486_39	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0190486_39	PF03796,MF_04154,NF004109,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0190486_41	phrog_1032	48.1	0.00000000000023	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0190486_41	1203554.HMPREF1476_00237	97.1	2.33e-20	Helix-turn-helix domain	N/A
COG	UHGV-0190486_41	COG0640	N/A	N/A	DNA-binding transcriptional regulator, ArsR family	N/A
structural_annotation	UHGV-0190486_41	PF10007,MF_01909,NF040939,COG5529	N/A	N/A	N/A	N/A
PHROG	UHGV-0190486_42	phrog_270	46.9	0.00000000000061	replication initiation protein	DNA, RNA and nucleotide metabolism
Pfam	UHGV-0190486_42	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0190486_42	COG2188	N/A	N/A	DNA-binding transcriptional regulator, GntR family	N/A
PHROG	UHGV-0190486_46	phrog_2324	144.2	4.90454e-43	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0190486_46	UniRef90_A0A6J5KNV3	107.0	1.54e-25	Essential recombination function protein	N/A
eggNOG-mapper	UHGV-0190486_46	1209989.TepiRe1_1126	99.8	5.33e-23	ERF superfamily	N/A
Pfam	UHGV-0190486_46	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0190486_46	PF04404,COG5055	N/A	N/A	N/A	N/A
KOfam	UHGV-0190486_47	K03111	160.2	0	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0190486_47	phrog_44	137.8	7.09996e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0190486_47	UniRef90_R7C2Q7	124.0	9.04e-34	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0190486_47	1004785.AMBLS11_12370	119.0	3.72e-32	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0190486_47	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0190486_47	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0190486_47	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0190486_47	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0190486_47	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0190486_48	phrog_253	46.9	0.00000000000055	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
Pfam	UHGV-0190486_48	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
eggNOG-mapper	UHGV-0190486_56	742821.HMPREF9464_01810	53.5	0.0000000114	N/A	N/A
KOfam	UHGV-0190486_57	K08640	90.9	2.2e-26	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-0190486_57	phrog_894	84.4	1.7e-24	endolysin	lysis
UniRef90	UHGV-0190486_57	UniRef90_A0A3B9QA10	249.0	0	Peptidase_M15_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0190486_57	1327968.R9ZW03_9VIRU	90.1	1.67e-21	Peptidase M15	N/A
Pfam	UHGV-0190486_57	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
structural_annotation	UHGV-0190486_57	PF05951,COG3108	N/A	N/A	N/A	N/A
PHROG	UHGV-0190486_58	phrog_199	67.5	1.5e-19	holin	lysis
UniRef90	UHGV-0190486_58	UniRef90_UPI000A02732D	288.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-0190486_58	742821.HMPREF9464_01076	101.0	6.75e-25	Bacteriophage holin family	N/A
Pfam	UHGV-0190486_58	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0190486_58	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0190486_58	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0190486_58	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0190486_59	phrog_2143	113.1	2.3e-33	N/A	unknown function
UniRef90	UHGV-0190486_59	UniRef90_UPI00158AE458	90.5	8.89e-19	glucosaminidase domain-containing protein	N/A
eggNOG-mapper	UHGV-0190486_59	742823.HMPREF9465_00917	162.0	0	N/A	N/A
PHROG	UHGV-0190486_60	phrog_19111	49.2	0.000000000000041	N/A	unknown function