UHGV-0190672 (vOTU-029930)

Viral Genome: UHGV-0190672

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0190672
vOTU ID	vOTU-029930
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMEA2737695_a1_ct2930_vs1@Siphoviridae__sp._ct9pm1
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.26 (Medium-quality)
Trimmed provirus	Yes
CheckV viral markers	9
CheckV host markers	4
Recoded stop codon	No

Viral Content
geNomad score	0.9539
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.61
Jumbo phage	No

Genome content
Genome length (bp)	20,299
GC content	59.96%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	37
CDS density	95%
Average CDS length (bps)	522.49
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 54.26)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0190672_1	K07504	447.3	0	K07504; predicted type IV restriction endonuclease	N/A
PHROG	UHGV-0190672_1	phrog_4225	465.9	0	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0190672_1	UniRef90_UPI0011DD3E1F	611.0	0	type I restriction endonuclease	N/A
eggNOG-mapper	UHGV-0190672_1	742738.HMPREF9460_04035	626.0	0	Type I restriction enzyme R protein N terminus (HSDR_N)	N/A
Pfam	UHGV-0190672_1	PF04313	N/A	N/A	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
COG	UHGV-0190672_1	COG4748	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0190672_1	PF13588,TIGR04256,COG4748	N/A	N/A	N/A	N/A
PHROG	UHGV-0190672_2	phrog_87	81.7	6.8e-24	metallo-protease	other
UniRef90	UHGV-0190672_2	UniRef90_UPI00189AFBD9	229.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0190672_2	1007096.BAGW01000011_gene2354	149.0	1.96182e-44	IrrE N-terminal-like domain	N/A
Pfam	UHGV-0190672_2	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0190672_2	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0190672_2	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0190672_3	K22299	62.1	1.3e-17	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0190672_3	phrog_8	64.9	1.8e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0190672_3	UniRef90_UPI00195603C9	112.0	1.29e-29	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0190672_3	1121344.JHZO01000003_gene989	74.7	0.0000000000000014	PFAM helix-turn-helix domain protein	N/A
Pfam	UHGV-0190672_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0190672_3	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0190672_3	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0190672_4	K07729	58.8	1.2e-16	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0190672_4	phrog_8	49.2	0.00000000000011	transcriptional regulator	transcription regulation
UniRef90	UHGV-0190672_4	UniRef90_A0A2K9P4T7	65.1	0.00000000000228	Helix-turn-helix domain protein	N/A
eggNOG-mapper	UHGV-0190672_4	1117108.PAALTS15_22128	63.2	0.0000000000363	SpoVT / AbrB like domain	N/A
Pfam	UHGV-0190672_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0190672_4	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
UniRef90	UHGV-0190672_10	UniRef90_A0A316Q5K4	53.1	0.0000000641	TraY domain-containing protein	N/A
eggNOG-mapper	UHGV-0190672_10	1378168.N510_00491	72.0	2.82e-16	N/A	N/A
structural_annotation	UHGV-0190672_10	PF03869,NF008671,COG4877	N/A	N/A	N/A	N/A
PHROG	UHGV-0190672_12	phrog_22134	43.5	0.0000000000054	N/A	unknown function
UniRef90	UHGV-0190672_12	UniRef90_A0A3C0WYV2	56.6	0.0000000232	Helix-turn-helix domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0190672_12	665950.HMPREF1025_01423	57.4	0.0000000171	N/A	N/A
Pfam	UHGV-0190672_12	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0190672_12	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
PHROG	UHGV-0190672_13	phrog_678	61.7	1.7e-17	replication initiation O-like	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0190672_13	UniRef90_UPI001ADEF5BC	172.0	0	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0190672_13	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
structural_annotation	UHGV-0190672_13	PF20714,MF_01177,NF040582,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-0190672_14	K02314	274.5	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0190672_14	phrog_19	247.4	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0190672_14	UniRef90_A0A3A8Z521	546.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0190672_14	1226322.HMPREF1545_00095	287.0	0	DnaB-like helicase N terminal domain	N/A
Pfam	UHGV-0190672_14	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0190672_14	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0190672_14	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0190672_14	PF03796,PF00772,MF_04155,NF005240,COG0305	N/A	N/A	N/A	N/A
KOfam	UHGV-0190672_15	K03496	198.9	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0190672_15	phrog_164	162.2	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0190672_15	UniRef90_A0A1Y4CFT6	446.0	0	AAA_31 domain-containing protein	N/A
eggNOG-mapper	UHGV-0190672_15	742738.HMPREF9460_00854	243.0	0	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	N/A
Pfam	UHGV-0190672_15	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0190672_15	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0190672_15	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
PHROG	UHGV-0190672_16	phrog_15609	271.5	0	N/A	unknown function
UniRef90	UHGV-0190672_16	UniRef90_UPI001246A313	380.0	0	N/A	N/A
eggNOG-mapper	UHGV-0190672_16	1226322.HMPREF1545_00098	248.0	0	N/A	N/A
Pfam	UHGV-0190672_16	PF11300	N/A	N/A	N/A	DUF3102
COG	UHGV-0190672_16	COG2433	N/A	N/A	Possible nuclease of RNase H fold, RuvC/YqgF family	N/A
structural_annotation	UHGV-0190672_16	PF11300,PF07321,NF038070	N/A	N/A	N/A	N/A
KOfam	UHGV-0190672_17	K03111	140.8	1.49995e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0190672_17	phrog_44	139.9	1.6e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0190672_17	UniRef90_UPI0012489F18	209.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0190672_17	1378168.N510_01674	160.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0190672_17	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0190672_17	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0190672_17	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0190672_17	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0190672_17	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0190672_18	phrog_10714	100.3	1.2e-29	N/A	unknown function
UniRef90	UHGV-0190672_18	UniRef90_UPI001C3A10B1	52.0	0.00000428	Zinc ribbon domain-containing protein	N/A
eggNOG-mapper	UHGV-0190672_18	1226322.HMPREF1545_00023	130.0	1.14e-37	N/A	N/A
PHROG	UHGV-0190672_19	phrog_25732	62.1	6.7e-18	N/A	unknown function
PHROG	UHGV-0190672_21	phrog_31029	154.0	0	N/A	unknown function
PHROG	UHGV-0190672_25	phrog_3584	177.2	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0190672_25	742738.HMPREF9460_00867	221.0	0	N/A	N/A
structural_annotation	UHGV-0190672_25	PF01446,NF041486	N/A	N/A	N/A	N/A
UniRef90	UHGV-0190672_26	UniRef90_UPI001F309B22	120.0	2.71e-34	cysteine-rich KTR domain-containing protein	N/A
eggNOG-mapper	UHGV-0190672_26	1226322.HMPREF1545_00110	60.5	0.0000000000172	Cysteine-rich KTR	N/A
Pfam	UHGV-0190672_26	PF14205	N/A	N/A	Cysteine-rich KTR	Cys_rich_KTR
structural_annotation	UHGV-0190672_26	PF14205,COG4416	N/A	N/A	N/A	N/A
PHROG	UHGV-0190672_27	phrog_144	94.9	7.4e-28	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0190672_27	UniRef90_A0A1Y4RJ73	222.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0190672_27	742738.HMPREF9460_00869	199.0	0	HNH endonuclease	N/A
AcrCatalog	UHGV-0190672_27	cluster_19695	53.1	0.00000000001	NA	N/A
Pfam	UHGV-0190672_27	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0190672_27	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0190672_27	PF01844,COG1403	N/A	N/A	N/A	N/A
KOfam	UHGV-0190672_29	K00571	171.9	0	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0190672_29	phrog_12862	172.0	0	N/A	unknown function
UniRef90	UHGV-0190672_29	UniRef90_A0A1Y3RDZ9	338.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0190672_29	1120998.AUFC01000030_gene2227	266.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-0190672_29	MTase_II_00037	148.2	0	Type II methyltransferase	RM
Pfam	UHGV-0190672_29	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0190672_29	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0190672_29	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0190672_30	phrog_83	77.9	1.3e-22	terminase small subunit	head and packaging
UniRef90	UHGV-0190672_30	UniRef90_UPI0013EF3F2C	279.0	0	phage terminase small subunit P27 family	N/A
eggNOG-mapper	UHGV-0190672_30	1007096.BAGW01000012_gene2373	217.0	0	Phage terminase, small subunit	N/A
Pfam	UHGV-0190672_30	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
NCBIFam	UHGV-0190672_30	TIGR01558.1	N/A	N/A	phage terminase small subunit P27 family	N/A
COG	UHGV-0190672_30	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0190672_30	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0190672_31	phrog_9	370.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0190672_31	UniRef90_UPI001031973F	946.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0190672_31	1007096.BAGW01000012_gene2374	809.0	0	Phage Terminase	N/A
Pfam	UHGV-0190672_31	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0190672_31	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0190672_31	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0190672_31	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0190672_33	phrog_12	259.7	0	portal protein	head and packaging
UniRef90	UHGV-0190672_33	UniRef90_A0A1Y4RNE3	658.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0190672_33	742738.HMPREF9460_00874	576.0	0	Phage portal protein	N/A
Pfam	UHGV-0190672_33	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0190672_33	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0190672_33	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0190672_33	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0190672_34	K01358	100.7	2.1e-29	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0190672_34	phrog_94	142.3	5.09933e-42	head maturation protease	head and packaging
UniRef90	UHGV-0190672_34	UniRef90_A0A096CPA9	374.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0190672_34	742738.HMPREF9460_00875	374.0	0	Clp protease	N/A
Pfam	UHGV-0190672_34	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0190672_34	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0190672_34	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0190672_35	phrog_10	151.2	8.40779e-45	major head protein	head and packaging
UniRef90	UHGV-0190672_35	UniRef90_UPI00195AAE7C	676.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0190672_35	742738.HMPREF9460_00876	671.0	0	Phage capsid family	N/A
Pfam	UHGV-0190672_35	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0190672_35	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0190672_35	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0190672_35	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0190672_36	742738.HMPREF9460_00877	173.0	0	N/A	N/A
structural_annotation	UHGV-0190672_36	PF03898,NF033675	N/A	N/A	N/A	N/A
UniRef90	UHGV-0190672_37	UniRef90_UPI0010309381	82.8	1.52e-18	head-tail connector protein	N/A
eggNOG-mapper	UHGV-0190672_37	742738.HMPREF9460_00878	71.2	0.0000000000000114	N/A	N/A
structural_annotation	UHGV-0190672_37	PF05135,TIGR01560	N/A	N/A	N/A	N/A