UHGV-0190986 (vOTU-022954)

Viral Genome: UHGV-0190986

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0190986
vOTU ID	vOTU-022954
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMEA2737824_a1_ct52349_vs1@Siphoviridae__sp._ctSXH1
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.33 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9807
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.21
Jumbo phage	No

Genome content
Genome length (bp)	29,350
GC content	45.52%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	30
CDS density	93%
Average CDS length (bps)	907.90
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 70.33)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0190986_3	phrog_36	54.2	0.0000000000000026	transcriptional regulator	transcription regulation
UniRef90	UHGV-0190986_3	UniRef90_R6ZAS5	171.0	0	GED domain-containing protein	N/A
eggNOG-mapper	UHGV-0190986_3	411902.CLOBOL_00148	185.0	0	N/A	N/A
structural_annotation	UHGV-0190986_3	PF02996	N/A	N/A	N/A	N/A
KOfam	UHGV-0190986_4	K07474	124.5	1.2e-36	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0190986_4	phrog_2606	338.2	0	terminase small subunit	head and packaging
UniRef90	UHGV-0190986_4	UniRef90_UPI001592B6B8	348.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-0190986_4	1235799.C818_04216	337.0	0	Putative ATPase subunit of terminase (gpP-like)	N/A
Pfam	UHGV-0190986_4	PF10668	N/A	N/A	Phage terminase small subunit	Phage_terminase
Pfam	UHGV-0190986_4	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0190986_4	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0190986_4	PF03592,PF10668,NF040601,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0190986_5	K06909	101.7	9.3e-30	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0190986_5	phrog_2	102.5	7.2e-30	terminase large subunit	head and packaging
UniRef90	UHGV-0190986_5	UniRef90_R5ILS3	809.0	0	Phage terminase large subunit PBSX family	N/A
eggNOG-mapper	UHGV-0190986_5	1449050.JNLE01000003_gene3895	600.0	0	phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0190986_5	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0190986_5	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0190986_5	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0190986_6	phrog_533	413.3	0	portal protein	head and packaging
UniRef90	UHGV-0190986_6	UniRef90_A0A396QLL8	825.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0190986_6	411902.CLOBOL_00138	716.0	0	N/A	N/A
Pfam	UHGV-0190986_6	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0190986_6	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0190986_7	phrog_581	308.4	0	minor head protein	head and packaging
UniRef90	UHGV-0190986_7	UniRef90_A0A396Q8K1	687.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0190986_7	411902.CLOBOL_00137	602.0	0	N/A	N/A
Pfam	UHGV-0190986_7	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-0190986_7	PF15644	N/A	N/A	Papain fold toxin 1, glutamine deamidase	Gln_amidase
COG	UHGV-0190986_7	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0190986_7	PF06152,PF15887,TIGR01641,COG4307	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0190986_8	476272.RUMHYD_02848	81.3	4.58e-19	N/A	N/A
structural_annotation	UHGV-0190986_8	PF16244	N/A	N/A	N/A	N/A
PHROG	UHGV-0190986_9	phrog_918	96.9	1.1e-28	N/A	unknown function
UniRef90	UHGV-0190986_9	UniRef90_UPI00156D5D02	159.0	0	N/A	N/A
eggNOG-mapper	UHGV-0190986_9	537007.BLAHAN_05515	154.0	0	N/A	N/A
Pfam	UHGV-0190986_9	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0190986_9	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-0190986_10	phrog_355	59.9	3.7e-17	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0190986_10	UniRef90_A0A417J5P5	202.0	0	N/A	N/A
eggNOG-mapper	UHGV-0190986_10	97138.C820_00250	124.0	1.86e-35	N/A	N/A
Pfam	UHGV-0190986_10	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0190986_10	PF14359,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0190986_11	phrog_194	89.5	4.5e-26	head scaffolding protein	head and packaging
UniRef90	UHGV-0190986_11	UniRef90_UPI001923CA74	255.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0190986_11	411902.CLOBOL_00135	234.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0190986_11	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0190986_11	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0190986_12	phrog_10	175.7	0	major head protein	head and packaging
UniRef90	UHGV-0190986_12	UniRef90_A0A3R6X865	692.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0190986_12	411902.CLOBOL_00134	658.0	0	Phage capsid family	N/A
Pfam	UHGV-0190986_12	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0190986_12	PF08308	N/A	N/A	PEGA domain	PEGA
NCBIFam	UHGV-0190986_12	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0190986_12	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0190986_12	PF05065,PF13620,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0190986_13	phrog_541	103.4	1.5e-30	head-tail adaptor	connector
eggNOG-mapper	UHGV-0190986_13	411902.CLOBOL_00133	164.0	0	N/A	N/A
PHROG	UHGV-0190986_14	phrog_3366	77.8	1.1e-22	N/A	unknown function
eggNOG-mapper	UHGV-0190986_14	411902.CLOBOL_00132	183.0	0	N/A	N/A
Pfam	UHGV-0190986_14	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0190986_14	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0190986_15	phrog_556	92.2	1.7e-27	minor head protein	head and packaging
UniRef90	UHGV-0190986_15	UniRef90_UPI0015948E32	225.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0190986_15	411902.CLOBOL_00131	228.0	0	Minor capsid protein	N/A
Pfam	UHGV-0190986_15	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0190986_15	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0190986_16	phrog_3266	119.5	1.5e-35	tail completion	connector
eggNOG-mapper	UHGV-0190986_16	411902.CLOBOL_00130	197.0	0	N/A	N/A
structural_annotation	UHGV-0190986_16	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0190986_17	phrog_3099	142.3	2.49992e-42	N/A	unknown function
eggNOG-mapper	UHGV-0190986_17	411902.CLOBOL_00129	226.0	0	N/A	N/A
structural_annotation	UHGV-0190986_17	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0190986_18	phrog_11299	99.0	4.4e-29	N/A	unknown function
eggNOG-mapper	UHGV-0190986_18	411902.CLOBOL_00128	187.0	0	N/A	N/A
structural_annotation	UHGV-0190986_18	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0190986_19	phrog_706	144.9	4.49817e-43	N/A	unknown function
UniRef90	UHGV-0190986_19	UniRef90_A0A0F0CE18	298.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0190986_19	411902.CLOBOL_00127	303.0	0	N/A	N/A
Pfam	UHGV-0190986_19	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0190986_19	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0190986_20	phrog_1535	239.5	0	tail length tape measure protein	tail
UniRef90	UHGV-0190986_20	UniRef90_A0A1H7MQ92	181.0	2.68068e-42	Phage-related protein	N/A
eggNOG-mapper	UHGV-0190986_20	411902.CLOBOL_00126	1021.0	0	N/A	N/A
COG	UHGV-0190986_20	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-0190986_21	phrog_1194	50.9	0.000000000000024	N/A	unknown function
eggNOG-mapper	UHGV-0190986_21	411902.CLOBOL_00125	223.0	0	N/A	N/A
structural_annotation	UHGV-0190986_21	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0190986_22	phrog_13879	189.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0190986_22	411902.CLOBOL_00124	983.0	0	N/A	N/A
structural_annotation	UHGV-0190986_22	PF14594,PF21114,MF_00813,NF033848,TIGR02961,COG4379,COG4266	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0190986_23	411902.CLOBOL_00123	173.0	0	N/A	N/A
PHROG	UHGV-0190986_24	phrog_30220	43.5	0.0000000000044	N/A	unknown function
eggNOG-mapper	UHGV-0190986_24	411902.CLOBOL_00122	81.3	0.00000000000000187	N/A	N/A
structural_annotation	UHGV-0190986_24	PF20620,NF038128	N/A	N/A	N/A	N/A
PHROG	UHGV-0190986_26	phrog_215	84.6	2.8026e-45	structural protein with Ig domain	head and packaging
UniRef90	UHGV-0190986_26	UniRef90_A0A3P1XMC3	77.8	0.0000000000147	T9SS C-terminal target domain-containing protein	N/A
eggNOG-mapper	UHGV-0190986_26	1408416.JNJT01000002_gene156	110.0	5.52e-22	N-Acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0190986_26	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
COG	UHGV-0190986_26	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0190986_27	PF21602,PF00544,PF13385,NF007517,NF007636	N/A	N/A	N/A	N/A
PHROG	UHGV-0190986_28	phrog_199	76.8	2.4e-22	holin	lysis
UniRef90	UHGV-0190986_28	UniRef90_D7GNX5	214.0	0	Toxin secretion/phage lysis holin	N/A
eggNOG-mapper	UHGV-0190986_28	742740.HMPREF9474_04290	188.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0190986_28	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0190986_28	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0190986_28	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0190986_28	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
UniRef90	UHGV-0190986_29	UniRef90_A0A416IJF5	48.9	0.000000512	Molybdenum cofactor biosynthesis protein MoaD	N/A
KOfam	UHGV-0190986_30	K17733	149.4	1.96182e-44	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	N/A
PHROG	UHGV-0190986_30	phrog_2649	131.1	1.1e-38	endolysin	lysis
UniRef90	UHGV-0190986_30	UniRef90_A0A3R6TWE4	414.0	0	Peptidase_M15_4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0190986_30	411902.CLOBOL_06235	210.0	0	D-alanyl-D-alanine carboxypeptidase	N/A
Pfam	UHGV-0190986_30	PF13539	N/A	N/A	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
Pfam	UHGV-0190986_30	PF01473	N/A	N/A	Putative cell wall binding repeat	Choline_bind_1
COG	UHGV-0190986_30	COG1876	N/A	N/A	LD-carboxypeptidase LdcB, LAS superfamily	N/A
structural_annotation	UHGV-0190986_30	PF02557,PF19127,MF_01924,NF007557,TIGR04035,COG2173	N/A	N/A	N/A	N/A