UHGV-0191221 (vOTU-066360)

Viral Genome: UHGV-0191221

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0191221
vOTU ID	vOTU-066360
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_597328
Associated BioSample	SAMN09781764
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.83 (High-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9802
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.77
Jumbo phage	No

Genome content
Genome length (bp)	43,769
GC content	55.60%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	66
CDS density	93%
Average CDS length (bps)	614.91
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 98.83)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0191221_2	PF03869	N/A	N/A	N/A	N/A
COG	UHGV-0191221_3	COG0249	N/A	N/A	DNA mismatch repair ATPase MutS	N/A
PHROG	UHGV-0191221_5	phrog_19458	278.3	0	primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0191221_5	UniRef90_A0A1V5KAU2	221.0	0	DarA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0191221_5	657322.FPR_26770	330.0	0	N/A	N/A
COG	UHGV-0191221_5	COG4227	N/A	N/A	Antirestriction protein ArdC	N/A
eggNOG-mapper	UHGV-0191221_6	469378.Ccur_02570	73.9	5.79e-17	N/A	N/A
eggNOG-mapper	UHGV-0191221_9	1394176.AWUO01000014_gene642	93.2	2.37e-22	N/A	N/A
structural_annotation	UHGV-0191221_9	PF07825,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0191221_11	phrog_5070	139.2	1.29998e-41	N/A	unknown function
eggNOG-mapper	UHGV-0191221_11	929794.CALV01000014_gene27	80.1	0.0000000000000176	Homologous to orf229 gp Streptococcus thermophilus bacteriophage Sfi19 gi 9632919 ref NP_049948.1	N/A
COG	UHGV-0191221_11	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
structural_annotation	UHGV-0191221_11	MF_01691,NF040481	N/A	N/A	N/A	N/A
PHROG	UHGV-0191221_12	phrog_36	74.4	1.9e-21	transcriptional regulator	transcription regulation
Pfam	UHGV-0191221_12	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-0191221_12	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0191221_12	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0191221_14	phrog_3136	144.2	3.60134e-43	N/A	unknown function
UniRef90	UHGV-0191221_14	UniRef90_UPI001CBCD733	171.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0191221_14	693746.OBV_25380	60.8	0.0000000113	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0191221_14	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0191221_14	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0191221_15	phrog_599	46.8	0.00000000000064	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0191221_15	UniRef90_A0A845MWR1	64.3	0.00000000000252	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-0191221_15	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0191221_15	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0191221_15	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0191221_15	PF14354,NF007260	N/A	N/A	N/A	N/A
PHROG	UHGV-0191221_16	phrog_6721	294.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0191221_16	665950.HMPREF1025_01974	271.0	0	N/A	N/A
structural_annotation	UHGV-0191221_16	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-0191221_19	phrog_757	192.4	0	DNA methyltransferase	other
UniRef90	UHGV-0191221_19	UniRef90_A0A3E2U1Y9	270.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0191221_19	748224.HMPREF9436_03069	256.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0191221_19	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0191221_19	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0191221_21	phrog_236	83.3	4.8e-24	nucleotide kinase	other
UniRef90	UHGV-0191221_21	UniRef90_UPI00189D59F4	95.9	1.14e-23	N/A	N/A
eggNOG-mapper	UHGV-0191221_21	1236504.HMPREF2132_11120	74.7	4.98e-16	N/A	N/A
Pfam	UHGV-0191221_21	PF11753	N/A	N/A	N/A	DUF3310
structural_annotation	UHGV-0191221_21	PF11753	N/A	N/A	N/A	N/A
KOfam	UHGV-0191221_22	K01160	42.1	0.000000000022	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0191221_22	phrog_1682	66.1	5.6e-19	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0191221_22	UniRef90_UPI0009406B47	96.7	1.91e-23	endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0191221_22	220668.lp_2433	92.4	1.48e-22	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0191221_22	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0191221_22	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0191221_23	K02314	231.4	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0191221_23	phrog_19	218.2	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0191221_23	UniRef90_UPI001F1C052D	434.0	0	replicative DNA helicase	N/A
eggNOG-mapper	UHGV-0191221_23	1203606.HMPREF1526_01325	164.0	1.68156e-43	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0191221_23	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0191221_23	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0191221_23	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0191221_23	PF03796,PF00772,MF_04155,NF005240,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0191221_24	phrog_270	116.0	4.3e-34	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0191221_24	UniRef90_UPI000497F8A6	151.0	5.37958e-42	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0191221_24	1232446.BAIE02000002_gene816	151.0	9.02436e-43	N/A	N/A
structural_annotation	UHGV-0191221_24	PF05584,MF_01819,TIGR01610,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-0191221_25	K03111	119.5	4.6e-35	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0191221_25	phrog_44	124.3	9.9e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0191221_25	UniRef90_UPI001F420DC7	134.0	1.34e-37	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0191221_25	748224.HMPREF9436_03359	117.0	6.94e-32	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0191221_25	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0191221_25	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0191221_25	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0191221_25	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0191221_25	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0191221_26	phrog_7566	82.9	2.6e-24	N/A	unknown function
UniRef90	UHGV-0191221_26	UniRef90_A0A8D9UHC0	79.7	3.01e-17	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-0191221_26	693746.OBV_25470	89.7	1.03e-21	N/A	N/A
PHROG	UHGV-0191221_27	phrog_72	62.8	4.4e-18	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0191221_27	UniRef90_UPI000C7BF263	169.0	0	recombination protein NinB	N/A
eggNOG-mapper	UHGV-0191221_27	445972.ANACOL_01825	136.0	1.3e-38	N/A	N/A
structural_annotation	UHGV-0191221_27	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0191221_28	phrog_7838	132.9	2.6e-39	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0191221_28	UniRef90_A0A8D9UGW3	224.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0191221_28	742767.HMPREF9456_02052	180.0	0	N/A	N/A
structural_annotation	UHGV-0191221_28	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
PHROG	UHGV-0191221_29	phrog_253	115.2	5.1e-34	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0191221_29	UniRef90_E2ZNS5	150.0	8.40779e-44	Siphovirus Gp157	N/A
eggNOG-mapper	UHGV-0191221_29	748224.HMPREF9436_03356	150.0	1.4013e-44	Siphovirus Gp157	N/A
Pfam	UHGV-0191221_29	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0191221_29	PF05565	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0191221_33	596152.DesU5LDRAFT_1910	89.4	2.66e-19	N/A	N/A
structural_annotation	UHGV-0191221_33	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0191221_34	PF10743,NF033787	N/A	N/A	N/A	N/A
PHROG	UHGV-0191221_35	phrog_463	221.5	0	anti-repressor	transcription regulation
UniRef90	UHGV-0191221_35	UniRef90_UPI00137B411D	276.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-0191221_35	411490.ANACAC_00813	231.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0191221_35	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0191221_35	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0191221_35	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0191221_35	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-0191221_36	phrog_8	45.8	0.0000000000013	transcriptional regulator	transcription regulation
UniRef90	UHGV-0191221_36	UniRef90_UPI001C009F10	115.0	2.65e-32	helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0191221_36	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0191221_36	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0191221_36	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0191221_37	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0191221_39	1536773.R70331_05415	59.3	0.0000000104	N/A	N/A
structural_annotation	UHGV-0191221_39	PF10358	N/A	N/A	N/A	N/A
Pfam	UHGV-0191221_40	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0191221_40	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0191221_40	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0191221_41	K14059	96.8	3.4e-28	int; integrase	N/A
PHROG	UHGV-0191221_41	phrog_1	100.1	2.9e-29	integrase	integration and excision
UniRef90	UHGV-0191221_41	UniRef90_UPI001897E1C8	154.0	1.18e-39	site-specific integrase	N/A
eggNOG-mapper	UHGV-0191221_41	411471.SUBVAR_07390	101.0	1.12e-21	Phage integrase family	N/A
Pfam	UHGV-0191221_41	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0191221_41	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0191221_41	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
UniRef90	UHGV-0191221_42	UniRef90_A0A4R1R5G7	77.8	3.22e-18	Anaerobic ribonucleoside-triphosphate reductase-like protein	N/A
eggNOG-mapper	UHGV-0191221_42	658088.HMPREF0987_00997	76.3	2.21e-18	Anaerobic ribonucleoside-triphosphate reductase	N/A
Pfam	UHGV-0191221_42	PF13597	N/A	N/A	Anaerobic ribonucleoside-triphosphate reductase	NRDD
COG	UHGV-0191221_42	COG1328	N/A	N/A	Anaerobic ribonucleoside-triphosphate reductase	N/A
eggNOG-mapper	UHGV-0191221_43	1506994.JNLQ01000004_gene3618	211.0	0	N/A	N/A
structural_annotation	UHGV-0191221_45	PF00210,MF_01441,NF011597,COG1528	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0191221_48	PF07638,MF_00674,TIGR02954,COG1846	N/A	N/A	N/A	N/A
PHROG	UHGV-0191221_49	phrog_1129	78.0	7.4e-23	holin	lysis
UniRef90	UHGV-0191221_49	UniRef90_A0A3R5ZDU6	134.0	3.56e-39	Holin	N/A
eggNOG-mapper	UHGV-0191221_49	1256908.HMPREF0373_00463	127.0	3.31e-37	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0191221_49	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0191221_49	PF06946	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0191221_50	97138.C820_00248	62.4	0.00000000000891	N/A	N/A
KOfam	UHGV-0191221_51	K07273	206.2	0	acm; lysozyme	N/A
PHROG	UHGV-0191221_51	phrog_291	157.7	0	endolysin	lysis
UniRef90	UHGV-0191221_51	UniRef90_UPI00164A97A0	209.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0191221_51	537013.CLOSTMETH_03464	164.0	2.8026e-45	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0191221_51	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0191221_51	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0191221_51	PF01183,PF05194,COG3757	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0191221_53	742733.HMPREF9469_05009	55.5	0.00000142	N/A	N/A
PHROG	UHGV-0191221_54	phrog_13589	206.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0191221_54	411460.RUMTOR_01324	241.0	0	N/A	N/A
PHROG	UHGV-0191221_55	phrog_31538	57.3	3e-16	N/A	unknown function
PHROG	UHGV-0191221_56	phrog_15594	83.4	1.9e-24	N/A	unknown function
eggNOG-mapper	UHGV-0191221_56	1118055.CAGU01000013_gene763	65.9	0.00000000000115	N/A	N/A
structural_annotation	UHGV-0191221_56	PF16640,TIGR04488	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0191221_57	665956.HMPREF1032_03918	110.0	1.03e-24	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	N/A
PHROG	UHGV-0191221_58	phrog_13046	42.9	0.0000000000021	N/A	unknown function
eggNOG-mapper	UHGV-0191221_58	693746.OBV_23880	107.0	2.65e-26	N/A	N/A
structural_annotation	UHGV-0191221_58	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-0191221_59	phrog_156	226.1	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0191221_59	693746.OBV_23930	457.0	0	N/A	N/A
structural_annotation	UHGV-0191221_59	PF12236,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-0191221_60	phrog_371	138.2	3.50002e-41	major head protein	head and packaging
UniRef90	UHGV-0191221_60	UniRef90_A0A1Y4TDW7	474.0	0	Mu-like_gpT domain-containing protein	N/A
eggNOG-mapper	UHGV-0191221_60	1226322.HMPREF1545_03848	285.0	0	N/A	N/A
Pfam	UHGV-0191221_60	PF10124	N/A	N/A	Mu-like prophage major head subunit gpT	Mu-like_gpT
structural_annotation	UHGV-0191221_60	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0191221_61	phrog_24113	55.8	6.3e-16	N/A	unknown function
eggNOG-mapper	UHGV-0191221_61	1226322.HMPREF1545_03847	50.1	0.0000065	N/A	N/A
structural_annotation	UHGV-0191221_61	PF11133,COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-0191221_62	phrog_35275	59.1	2.8e-17	N/A	unknown function
eggNOG-mapper	UHGV-0191221_62	1226322.HMPREF1545_03846	69.7	0.0000000000707	N/A	N/A
PHROG	UHGV-0191221_65	phrog_3287	178.4	0	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0191221_65	665956.HMPREF1032_03917	668.0	0	N/A	N/A
structural_annotation	UHGV-0191221_65	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
KOfam	UHGV-0191221_66	K21523	48.1	0.000000000000057	gp17; terminase, large subunit [EC:3.1.-.-]	N/A
PHROG	UHGV-0191221_66	phrog_2	101.2	1.5e-29	terminase large subunit	head and packaging
UniRef90	UHGV-0191221_66	UniRef90_UPI001F401ABC	659.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0191221_66	316274.Haur_1384	148.0	2.13e-36	N/A	N/A
Pfam	UHGV-0191221_66	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0191221_66	COG4373	N/A	N/A	Mu-like prophage FluMu protein gp28	N/A
structural_annotation	UHGV-0191221_66	PF03354,PF17289,MF_04146,TIGR01547,COG4373	N/A	N/A	N/A	N/A