UHGV-0191378 (vOTU-120710)

Viral Genome: UHGV-0191378

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0191378
vOTU ID	vOTU-120710
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMEA2737707_b1_ct103_vs3@Myoviridae__sp._ctwAt103@linear
Associated BioSample	SAMEA2737707
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.01 (Medium-quality)
Trimmed provirus	Yes
CheckV viral markers	21
CheckV host markers	4
Recoded stop codon	No

Viral Content
geNomad score	0.9769
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.05
Jumbo phage	No

Genome content
Genome length (bp)	34,884
GC content	44.91%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	47
CDS density	93%
Average CDS length (bps)	692.11
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 83.01)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0191378_1	K06400	291.4	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0191378_1	phrog_95	313.2	0	integrase	integration and excision
UniRef90	UHGV-0191378_1	UniRef90_A0A396P1J6	860.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0191378_1	411459.RUMOBE_00967	614.0	0	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	N/A
Pfam	UHGV-0191378_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0191378_1	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0191378_1	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0191378_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0191378_1	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0191378_2	phrog_5783	284.6	0	N/A	unknown function
UniRef90	UHGV-0191378_2	UniRef90_A0A0M6WJD5	381.0	0	NYN domain-containing protein	N/A
eggNOG-mapper	UHGV-0191378_2	864563.HMPREF9166_1292	298.0	0	NYN domain	N/A
Pfam	UHGV-0191378_2	PF01936	N/A	N/A	NYN domain	NYN
COG	UHGV-0191378_2	COG1432	N/A	N/A	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	N/A
structural_annotation	UHGV-0191378_2	PF01936,TIGR00288,COG1432	N/A	N/A	N/A	N/A
PHROG	UHGV-0191378_3	phrog_87	87.2	1.4e-25	metallo-protease	other
UniRef90	UHGV-0191378_3	UniRef90_A0A373INP4	187.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0191378_3	457412.RSAG_00798	184.0	0	Zn peptidase	N/A
Pfam	UHGV-0191378_3	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0191378_3	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0191378_3	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0191378_4	K22299	43.5	0.0000000000064	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
UniRef90	UHGV-0191378_4	UniRef90_UPI000E46C786	228.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0191378_4	883156.HMPREF9282_01207	91.3	4.2e-21	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0191378_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0191378_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0191378_4	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0191378_5	K07729	52.7	0.0000000000000096	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0191378_5	phrog_5823	57.3	2.7e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0191378_5	UniRef90_A0A1C5VJP1	103.0	7.52e-28	Anaerobic benzoate catabolism transcriptional regulator	N/A
eggNOG-mapper	UHGV-0191378_5	1120978.KB894087_gene408	62.8	0.00000000000181	Cro/C1-type HTH DNA-binding domain	N/A
PADLOC	UHGV-0191378_5	retron_type_VI_hth_cluster2_1	41.5	0.000000000041	N/A	Retron
Pfam	UHGV-0191378_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0191378_5	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0191378_7	phrog_9607	69.8	4.8e-20	N/A	unknown function
eggNOG-mapper	UHGV-0191378_7	1378168.N510_03161	190.0	0	N/A	N/A
structural_annotation	UHGV-0191378_7	PF02883,MF_00791,NF012200,COG3354	N/A	N/A	N/A	N/A
PHROG	UHGV-0191378_11	phrog_3584	171.0	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0191378_11	411459.RUMOBE_00953	322.0	0	N/A	N/A
structural_annotation	UHGV-0191378_11	PF01446	N/A	N/A	N/A	N/A
UniRef90	UHGV-0191378_12	UniRef90_A0A373P426	267.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0191378_12	411461.DORFOR_01140	91.3	1.34e-21	RNA-DNA hybrid ribonuclease activity	N/A
COG	UHGV-0191378_12	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0191378_12	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0191378_13	1235792.C808_00065	234.0	0	N/A	N/A
PHROG	UHGV-0191378_14	phrog_8470	331.9	0	N/A	unknown function
UniRef90	UHGV-0191378_14	UniRef90_UPI001D086F83	820.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0191378_14	97139.C824_00039	852.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0191378_14	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0191378_14	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0191378_15	phrog_15077	105.3	1.4e-31	N/A	unknown function
UniRef90	UHGV-0191378_15	UniRef90_A5ZPN2	159.0	6.48002e-41	N/A	N/A
eggNOG-mapper	UHGV-0191378_15	97139.C824_05986	225.0	0	N/A	N/A
structural_annotation	UHGV-0191378_15	PF11300,NF033725	N/A	N/A	N/A	N/A
UniRef90	UHGV-0191378_16	UniRef90_A0A373P4I4	112.0	1.4e-30	Winged helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0191378_16	PF01726	N/A	N/A	LexA DNA binding domain	LexA_DNA_bind
COG	UHGV-0191378_16	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0191378_16	PF01726,MF_00732,NF041852,COG0640	N/A	N/A	N/A	N/A
KOfam	UHGV-0191378_17	K03111	131.6	9.1e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0191378_17	phrog_44	134.2	8.7e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0191378_17	UniRef90_A0A373P5V7	261.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0191378_17	1256908.HMPREF0373_03133	219.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0191378_17	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0191378_17	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0191378_17	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0191378_17	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0191378_17	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0191378_18	phrog_7566	96.7	1.2e-28	N/A	unknown function
eggNOG-mapper	UHGV-0191378_18	411459.RUMOBE_00948	95.5	7.2e-24	N/A	N/A
structural_annotation	UHGV-0191378_19	PF02796,NF040595	N/A	N/A	N/A	N/A
PHROG	UHGV-0191378_21	phrog_16351	44.0	0.0000000000036	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0191378_21	UniRef90_D7GWI5	66.6	0.0000000000104	N/A	N/A
eggNOG-mapper	UHGV-0191378_21	658655.HMPREF0988_02575	97.8	6.61e-25	N/A	N/A
PHROG	UHGV-0191378_22	phrog_36	72.5	7e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-0191378_22	UniRef90_A0A174B4K2	221.0	0	RNA polymerase sigma factor, sigma-70 family	N/A
eggNOG-mapper	UHGV-0191378_22	1235800.C819_02243	93.2	2.43e-22	N/A	N/A
Pfam	UHGV-0191378_22	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
structural_annotation	UHGV-0191378_22	PF07374,MF_00674,NF007227,COG1342	N/A	N/A	N/A	N/A
KOfam	UHGV-0191378_23	K03496	160.1	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0191378_23	phrog_164	151.2	7.00649e-45	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0191378_23	UniRef90_UPI001ADDE49D	426.0	0	ParA family protein	N/A
eggNOG-mapper	UHGV-0191378_23	1410653.JHVC01000015_gene715	343.0	0	Anion-transporting ATPase	N/A
Pfam	UHGV-0191378_23	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0191378_23	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0191378_23	PF01656,MF_00355,NF041283,COG1192	N/A	N/A	N/A	N/A
PHROG	UHGV-0191378_24	phrog_6264	47.9	0.00000000000025	N/A	unknown function
PHROG	UHGV-0191378_26	phrog_1889	216.3	0	terminase small subunit	head and packaging
UniRef90	UHGV-0191378_26	UniRef90_A0A373P435	389.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0191378_26	33035.JPJF01000107_gene435	249.0	0	N/A	N/A
Pfam	UHGV-0191378_26	PF06056	N/A	N/A	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
NCBIFam	UHGV-0191378_26	NF040601.1	N/A	N/A	phage terminase small subunit	N/A
COG	UHGV-0191378_26	COG5484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0191378_26	PF06056,NF040601,COG5484	N/A	N/A	N/A	N/A
KOfam	UHGV-0191378_27	K06909	149.0	3.92364e-44	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0191378_27	phrog_10250	221.0	0	N/A	unknown function
UniRef90	UHGV-0191378_27	UniRef90_UPI00156F5FD7	848.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0191378_27	903814.ELI_3215	643.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0191378_27	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0191378_27	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0191378_27	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0191378_27	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0191378_28	phrog_64	396.0	0	portal protein	head and packaging
UniRef90	UHGV-0191378_28	UniRef90_A0A416N3J2	731.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0191378_28	742733.HMPREF9469_01826	580.0	0	Phage portal protein, SPP1 family	N/A
Pfam	UHGV-0191378_28	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-0191378_28	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-0191378_28	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0191378_29	phrog_115	353.5	0	minor head protein	head and packaging
UniRef90	UHGV-0191378_29	UniRef90_UPI00157127C3	649.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0191378_29	742733.HMPREF9469_01825	396.0	0	Phage head morphogenesis protein, SPP1 gp7 family	N/A
Pfam	UHGV-0191378_29	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0191378_29	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0191378_29	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0191378_29	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0191378_30	PF11344	N/A	N/A	N/A	N/A
PHROG	UHGV-0191378_31	phrog_30750	89.4	1.7e-26	N/A	unknown function
PHROG	UHGV-0191378_32	phrog_1048	177.2	0	N/A	unknown function
UniRef90	UHGV-0191378_32	UniRef90_A0A396MNX1	307.0	0	N/A	N/A
eggNOG-mapper	UHGV-0191378_32	457412.RSAG_01107	314.0	0	N/A	N/A
Pfam	UHGV-0191378_32	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0191378_32	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0191378_32	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-0191378_33	phrog_918	133.7	3.60001e-40	N/A	unknown function
UniRef90	UHGV-0191378_33	UniRef90_UPI00115A7D93	140.0	6.28062e-42	N/A	N/A
eggNOG-mapper	UHGV-0191378_33	298338.Q5ULN6_9CAUD	129.0	5.06e-38	N/A	N/A
Pfam	UHGV-0191378_33	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0191378_33	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-0191378_34	phrog_478	118.5	3.2e-35	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0191378_34	UniRef90_R6R5K5	142.0	4.25995e-41	Protein 64 protein	N/A
eggNOG-mapper	UHGV-0191378_34	1111121.HMPREF1247_0834	145.0	4.90454e-43	N/A	N/A
PHROG	UHGV-0191378_35	phrog_172	157.2	0	head scaffolding protein	head and packaging
UniRef90	UHGV-0191378_35	UniRef90_A0A415FLT0	266.0	0	N/A	N/A
eggNOG-mapper	UHGV-0191378_35	742733.HMPREF9469_01824	202.0	0	N/A	N/A
Pfam	UHGV-0191378_35	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0191378_35	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0191378_36	phrog_422	296.4	0	major head protein	head and packaging
UniRef90	UHGV-0191378_36	UniRef90_A0A2H4JCM6	494.0	0	Putative capsid protein	N/A
eggNOG-mapper	UHGV-0191378_36	742733.HMPREF9469_01823	499.0	0	N/A	N/A
structural_annotation	UHGV-0191378_36	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0191378_37	phrog_2724	62.1	9.6e-18	N/A	unknown function
UniRef90	UHGV-0191378_37	UniRef90_A0A564VY53	71.2	0.0000000000000135	Rho_N domain-containing protein	N/A
Pfam	UHGV-0191378_37	PF07498	N/A	N/A	Rho termination factor, N-terminal domain	Rho_N
structural_annotation	UHGV-0191378_37	PF07498	N/A	N/A	N/A	N/A
PHROG	UHGV-0191378_38	phrog_132	73.2	2.6e-21	head-tail adaptor	connector
UniRef90	UHGV-0191378_38	UniRef90_A0A173WLV7	176.0	0	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0191378_38	742733.HMPREF9469_01821	158.0	0	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-0191378_38	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0191378_38	PF05135	N/A	N/A	N/A	N/A
PHROG	UHGV-0191378_39	phrog_2168	84.1	9.3e-25	N/A	unknown function
eggNOG-mapper	UHGV-0191378_39	742733.HMPREF9469_01820	158.0	0	N/A	N/A
structural_annotation	UHGV-0191378_39	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0191378_40	phrog_5	83.4	3.2e-24	tail completion or Neck1 protein	connector
UniRef90	UHGV-0191378_40	UniRef90_UPI001D01C150	213.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0191378_40	742733.HMPREF9469_01819	181.0	0	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0191378_40	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0191378_40	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0191378_40	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0191378_41	phrog_78	54.9	0.0000000000000017	tail terminator	connector
eggNOG-mapper	UHGV-0191378_41	1235800.C819_00480	160.0	0	N/A	N/A
structural_annotation	UHGV-0191378_41	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0191378_42	phrog_158	67.3	3.1e-19	major tail protein	tail
UniRef90	UHGV-0191378_42	UniRef90_A0A1M7JWZ7	212.0	0	Phage tail tube protein, TTP	N/A
eggNOG-mapper	UHGV-0191378_42	742733.HMPREF9469_01817	190.0	0	Phage tail tube protein, TTP	N/A
Pfam	UHGV-0191378_42	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-0191378_42	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0191378_43	phrog_183	60.6	2.4e-17	tail chaperone protein	tail
UniRef90	UHGV-0191378_43	UniRef90_UPI0011DE12FE	179.0	0	N/A	N/A
eggNOG-mapper	UHGV-0191378_43	742733.HMPREF9469_01816	118.0	4.28e-32	N/A	N/A
Pfam	UHGV-0191378_43	PF19591	N/A	N/A	N/A	DUF6096
structural_annotation	UHGV-0191378_43	PF19591	N/A	N/A	N/A	N/A
PHROG	UHGV-0191378_44	phrog_2066	85.5	5.1e-25	N/A	unknown function
eggNOG-mapper	UHGV-0191378_44	1123304.AQYA01000037_gene232	73.9	0.00000000000000237	N/A	N/A
KOfam	UHGV-0191378_45	K20361	70.8	4.3e-21	USO1; intracellular protein transport protein USO1	N/A
PHROG	UHGV-0191378_45	phrog_167	400.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0191378_45	UniRef90_UPI00131A0471	701.0	0	transglycosylase SLT domain-containing protein	N/A
eggNOG-mapper	UHGV-0191378_45	397290.C810_01419	365.0	0	Transglycosylase SLT domain	N/A
Pfam	UHGV-0191378_45	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
COG	UHGV-0191378_45	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
PHROG	UHGV-0191378_46	phrog_1194	101.2	6.9e-30	N/A	unknown function
eggNOG-mapper	UHGV-0191378_46	1121866.AUGK01000003_gene1438	82.0	1.78e-18	N/A	N/A
Pfam	UHGV-0191378_46	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0191378_46	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0191378_47	phrog_6616	567.1	0	tail protein	tail
UniRef90	UHGV-0191378_47	UniRef90_UPI0015714EA8	571.0	0	tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-0191378_47	476272.RUMHYD_01992	341.0	0	N/A	N/A