UHGV-0192280 (vOTU-028145)

Viral Genome: UHGV-0192280

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0192280
vOTU ID	vOTU-028145
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN06164837_a1_ct129123_vs1@linear@Siphoviridae__sp._ct5s51
Associated BioSample	SAMN06164837
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.22 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.98
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23
Jumbo phage	No

Genome content
Genome length (bp)	32,976
GC content	49.13%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	48
CDS density	90%
Average CDS length (bps)	620.88
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 57.22)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0192280_1	phrog_4402	101.8	6.2e-30	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0192280_1	UniRef90_A0A0H5Q331	290.0	0	Rep_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0192280_1	999413.HMPREF1094_04438	123.0	2.62e-29	Initiator Replication protein	N/A
Pfam	UHGV-0192280_1	PF01051	N/A	N/A	Initiator Replication protein, WH1	Rep3_N
Pfam	UHGV-0192280_1	PF21205	N/A	N/A	Initiator Rep protein, WH2	Rep3_C
COG	UHGV-0192280_1	COG5527	N/A	N/A	Protein involved in initiation of plasmid replication	N/A
structural_annotation	UHGV-0192280_1	PF01051,PF21205,NF038290,COG5527	N/A	N/A	N/A	N/A
PHROG	UHGV-0192280_2	phrog_924	42.1	0.000000000017	N/A	unknown function
UniRef90	UHGV-0192280_2	UniRef90_A0A8F0UIE1	48.5	0.00000595	N/A	N/A
Pfam	UHGV-0192280_2	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0192280_2	NF041588	N/A	N/A	N/A	N/A
KOfam	UHGV-0192280_3	K03496	233.2	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0192280_3	phrog_164	156.3	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0192280_3	UniRef90_A0A1G6FF50	213.0	0	Chromosome partitioning protein	N/A
eggNOG-mapper	UHGV-0192280_3	1408423.JHYA01000021_gene392	191.0	0	Cellulose biosynthesis protein BcsQ	N/A
Pfam	UHGV-0192280_3	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0192280_3	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0192280_3	PF13614,MF_00533,NF010443,COG1192	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0192280_5	PF07878	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0192280_6	NF010188	N/A	N/A	N/A	N/A
PHROG	UHGV-0192280_7	phrog_7070	114.5	2.7e-34	N/A	unknown function
eggNOG-mapper	UHGV-0192280_7	1195072.M4HPW0_9CAUD	90.1	8.73e-22	N/A	N/A
eggNOG-mapper	UHGV-0192280_8	1415774.U728_1699	119.0	1.06e-32	N/A	N/A
eggNOG-mapper	UHGV-0192280_9	1408437.JNJN01000043_gene801	87.0	2.04e-18	N/A	N/A
eggNOG-mapper	UHGV-0192280_10	1408437.JNJN01000043_gene802	118.0	7.41e-33	N/A	N/A
PHROG	UHGV-0192280_11	phrog_16490	100.0	4.1e-38	N/A	unknown function
eggNOG-mapper	UHGV-0192280_11	1408437.JNJN01000043_gene803	160.0	2.8026e-45	N/A	N/A
PHROG	UHGV-0192280_13	phrog_21718	40.6	0.000000000035	N/A	unknown function
structural_annotation	UHGV-0192280_16	PF07870,MF_01506	N/A	N/A	N/A	N/A
PHROG	UHGV-0192280_17	phrog_15303	114.4	5.4e-34	N/A	unknown function
Pfam	UHGV-0192280_17	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
KOfam	UHGV-0192280_19	K07273	171.5	0	acm; lysozyme	N/A
PHROG	UHGV-0192280_19	phrog_291	144.1	1.10002e-42	endolysin	lysis
UniRef90	UHGV-0192280_19	UniRef90_E2ZES5	338.0	0	Glycosyl hydrolase family 25	N/A
eggNOG-mapper	UHGV-0192280_19	748224.HMPREF9436_00154	338.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0192280_19	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0192280_19	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0192280_19	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0192280_20	phrog_1382	52.7	0.0000000000000034	N/A	unknown function
eggNOG-mapper	UHGV-0192280_20	33035.JPJF01000043_gene998	48.1	0.000000473	N/A	N/A
eggNOG-mapper	UHGV-0192280_22	748224.HMPREF9436_01407	228.0	0	COG NOG18825 non supervised orthologous group	N/A
PHROG	UHGV-0192280_23	phrog_18725	59.4	6.7e-17	N/A	unknown function
eggNOG-mapper	UHGV-0192280_23	1226322.HMPREF1545_00062	75.5	0.00000000000000485	N/A	N/A
PHROG	UHGV-0192280_24	phrog_13879	229.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0192280_24	1122919.KB905559_gene1344	162.0	1.14e-39	N/A	N/A
Pfam	UHGV-0192280_24	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0192280_24	PF14594,PF19789,PF03256,PF09134,NF033848,COG3500,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0192280_25	phrog_1194	81.3	1e-23	N/A	unknown function
eggNOG-mapper	UHGV-0192280_25	665956.HMPREF1032_03629	55.8	0.00000004	N/A	N/A
Pfam	UHGV-0192280_25	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0192280_25	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0192280_26	phrog_1535	146.2	0	tail length tape measure protein	tail
UniRef90	UHGV-0192280_26	UniRef90_A0A318EME6	153.0	1.24e-33	Phage-related protein	N/A
eggNOG-mapper	UHGV-0192280_26	1121866.AUGK01000003_gene1437	195.0	0	phage tail tape measure protein	N/A
COG	UHGV-0192280_26	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
eggNOG-mapper	UHGV-0192280_27	1121333.JMLH01000047_gene1011	78.6	9.81e-17	N/A	N/A
UniRef90	UHGV-0192280_28	UniRef90_A0A847YX95	71.2	0.000000000000102	N/A	N/A
eggNOG-mapper	UHGV-0192280_28	1123263.AUKY01000015_gene1618	61.6	0.0000000000972	N/A	N/A
Pfam	UHGV-0192280_28	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0192280_28	PF16478	N/A	N/A	N/A	N/A
PHROG	UHGV-0192280_29	phrog_158	46.1	0.00000000000088	major tail protein	tail
UniRef90	UHGV-0192280_29	UniRef90_UPI001D087591	117.0	4.36e-31	phage tail protein	N/A
eggNOG-mapper	UHGV-0192280_29	1449343.JQLQ01000002_gene1514	55.1	0.000000206	Phage tail tube protein, TTP	N/A
structural_annotation	UHGV-0192280_29	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0192280_30	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0192280_32	PF19586,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0192280_33	UniRef90_A0A7C7ERG0	83.6	1.95e-18	DNA-packaging protein	N/A
structural_annotation	UHGV-0192280_33	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0192280_34	phrog_29	180.7	0	major head protein	head and packaging
UniRef90	UHGV-0192280_34	UniRef90_A0A2Z4QBB4	373.0	0	Major capsid protein E	N/A
eggNOG-mapper	UHGV-0192280_34	1347368.HG964404_gene4993	262.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0192280_34	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0192280_34	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0192280_37	phrog_64	150.9	7.00649e-45	portal protein	head and packaging
UniRef90	UHGV-0192280_37	UniRef90_A0A371ILT4	338.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0192280_37	1121866.AUGK01000003_gene1429	281.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0192280_37	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0192280_37	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0192280_39	phrog_38	176.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0192280_39	UniRef90_UPI000419A6BC	432.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0192280_39	1121866.AUGK01000003_gene1428	432.0	0	chromosome segregation	N/A
COG	UHGV-0192280_39	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0192280_39	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0192280_41	NF009949	N/A	N/A	N/A	N/A
KOfam	UHGV-0192280_42	K14060	140.9	1.10002e-41	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0192280_42	phrog_125	162.5	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0192280_42	UniRef90_A0A3D0LYX8	217.0	0	Resolvase	N/A
eggNOG-mapper	UHGV-0192280_42	1410633.JHWR01000012_gene95	197.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0192280_42	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0192280_42	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0192280_42	PF00239,PF02796,MF_00489,NF009949,COG1961	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0192280_45	PF19807,NF041793,COG4877	N/A	N/A	N/A	N/A
KOfam	UHGV-0192280_46	K07741	96.3	4.4e-28	antB; anti-repressor protein	N/A
PHROG	UHGV-0192280_46	phrog_373	134.2	1e-39	anti-repressor	transcription regulation
UniRef90	UHGV-0192280_46	UniRef90_A0A6N8HZA6	181.0	0	AntA/AntB antirepressor	N/A
eggNOG-mapper	UHGV-0192280_46	903814.ELI_3141	149.0	8.97994e-41	AntA/AntB antirepressor	N/A
Pfam	UHGV-0192280_46	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-0192280_46	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0192280_46	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0192280_46	PF10552,PF08346,TIGR02681,COG3561	N/A	N/A	N/A	N/A
Pfam	UHGV-0192280_48	PF12869	N/A	N/A	tRNA_anti-like	tRNA_anti-like
structural_annotation	UHGV-0192280_48	PF12869,MF_00720,NF040991,COG4085	N/A	N/A	N/A	N/A