UHGV-0192611 (vOTU-163255)

Viral Genome: UHGV-0192611

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0192611
vOTU ID	vOTU-163255
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN09781705_a1_ct118000_vs1@Siphoviridae__sp._ct8WV1
Associated BioSample	SAMN09781705
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	51.71 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9826
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.24
Jumbo phage	No

Genome content
Genome length (bp)	23,255
GC content	41.69%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	46
CDS density	92%
Average CDS length (bps)	466.04
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 51.71)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0192611_3	phrog_6058	54.4	0.0000000000000013	N/A	unknown function
UniRef90	UHGV-0192611_3	UniRef90_A0A2V1JQ38	63.2	0.0000000000636	Glycogen synthase	N/A
eggNOG-mapper	UHGV-0192611_3	742733.HMPREF9469_05094	61.2	0.0000000000606	N/A	N/A
AcrCatalog	UHGV-0192611_4	cluster_17974	61.2	3.3e-16	NA	N/A
structural_annotation	UHGV-0192611_8	NF001645	N/A	N/A	N/A	N/A
UniRef90	UHGV-0192611_9	UniRef90_R6RDX0	77.4	2.14e-17	Arginyl-tRNA synthetase	N/A
PHROG	UHGV-0192611_10	phrog_2872	165.0	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0192611_10	UniRef90_A0A8F2J9K2	296.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0192611_10	1304866.K413DRAFT_0827	223.0	0	AAA domain	N/A
Pfam	UHGV-0192611_10	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0192611_10	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0192611_11	phrog_21138	113.6	1.7e-39	N/A	unknown function
UniRef90	UHGV-0192611_11	UniRef90_A0A8E5T563	104.0	1.73e-24	Deacetylase sirtuin-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0192611_11	755731.Clo1100_3605	107.0	3.74e-26	N/A	N/A
structural_annotation	UHGV-0192611_11	PF06356,MF_04160,NF033179	N/A	N/A	N/A	N/A
PHROG	UHGV-0192611_13	phrog_18107	123.5	1.6e-36	N/A	unknown function
eggNOG-mapper	UHGV-0192611_13	476272.RUMHYD_02831	193.0	0	N/A	N/A
structural_annotation	UHGV-0192611_13	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0192611_14	phrog_3490	115.1	5.5e-34	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0192611_14	UniRef90_A0A173R9N6	282.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0192611_14	476272.RUMHYD_02832	282.0	0	ERCC4 domain	N/A
Pfam	UHGV-0192611_14	PF02732	N/A	N/A	ERCC4 domain	ERCC4
COG	UHGV-0192611_14	COG1948	N/A	N/A	ERCC4-type crossover junction endonuclease	N/A
structural_annotation	UHGV-0192611_14	PF02732,NF040956,COG1948	N/A	N/A	N/A	N/A
PHROG	UHGV-0192611_15	phrog_1313	380.4	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0192611_15	UniRef90_UPI001655DAE1	705.0	0	bifunctional DNA primase/polymerase	N/A
eggNOG-mapper	UHGV-0192611_15	500632.CLONEX_03568	306.0	0	Virulence-associated protein E	N/A
Pfam	UHGV-0192611_15	PF09250	N/A	N/A	Bifunctional DNA primase/polymerase, N-terminal	Prim-Pol
Pfam	UHGV-0192611_15	PF08708	N/A	N/A	Primase C terminal 1 (PriCT-1)	PriCT_1
Pfam	UHGV-0192611_15	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
COG	UHGV-0192611_15	COG5545	N/A	N/A	Predicted P-loop ATPase and inactivated derivatives	N/A
structural_annotation	UHGV-0192611_15	PF05272,PF09250,PF08708,MF_00016,NF011296,COG5545	N/A	N/A	N/A	N/A
UniRef90	UHGV-0192611_17	UniRef90_A0A6L8SWV5	168.0	0	Winged helix-turn-helix transcriptional regulator	N/A
structural_annotation	UHGV-0192611_17	PF01726,COG0640	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0192611_18	PF04936	N/A	N/A	N/A	N/A
KOfam	UHGV-0192611_20	K00558	238.2	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0192611_20	phrog_116	268.6	0	DNA methyltransferase	other
UniRef90	UHGV-0192611_20	UniRef90_A0A1C5MBD4	696.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0192611_20	1499683.CCFF01000017_gene2594	476.0	0	PFAM C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0192611_20	MTase_II_00058	249.9	0	Type II methyltransferase	RM
Pfam	UHGV-0192611_20	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0192611_20	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0192611_20	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0192611_20	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0192611_21	397290.C810_05186	51.6	0.000000309	N/A	N/A
PHROG	UHGV-0192611_22	phrog_599	45.3	0.0000000000017	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0192611_22	UniRef90_UPI001C0F2DCC	123.0	1.65e-35	Lar family restriction alleviation protein	N/A
Pfam	UHGV-0192611_22	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
PHROG	UHGV-0192611_24	phrog_20593	50.6	0.000000000000014	N/A	unknown function
structural_annotation	UHGV-0192611_24	PF07870,TIGR02501	N/A	N/A	N/A	N/A
PHROG	UHGV-0192611_25	phrog_874	176.9	0	N/A	unknown function
UniRef90	UHGV-0192611_25	UniRef90_A0A4P6LRJ9	182.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0192611_25	411468.CLOSCI_00298	179.0	0	N/A	N/A
structural_annotation	UHGV-0192611_25	PF04266,MF_00684,NF003443,COG4405	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0192611_26	PF06107,COG4481	N/A	N/A	N/A	N/A
PHROG	UHGV-0192611_28	phrog_38832	48.3	0.00000000000011	N/A	unknown function
UniRef90	UHGV-0192611_28	UniRef90_A0A415TX35	58.2	0.000000222	BAH domain-containing protein	N/A
eggNOG-mapper	UHGV-0192611_28	1235799.C818_02666	68.9	0.0000000000122	N/A	N/A
structural_annotation	UHGV-0192611_28	PF11302	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0192611_29	411459.RUMOBE_01385	55.5	0.0000000115	N/A	N/A
AcrCatalog	UHGV-0192611_29	cluster_11670	43.1	0.0000000259	NA	N/A
PHROG	UHGV-0192611_30	phrog_33130	105.9	1.3e-31	N/A	unknown function
structural_annotation	UHGV-0192611_30	PF10922,MF_00839	N/A	N/A	N/A	N/A
KOfam	UHGV-0192611_31	K07474	99.4	7e-29	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0192611_31	phrog_51	109.9	2e-32	terminase small subunit	head and packaging
UniRef90	UHGV-0192611_31	UniRef90_A0A416ZL36	154.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0192611_31	476272.RUMHYD_01754	144.0	6.16571e-43	Terminase small subunit	N/A
Pfam	UHGV-0192611_31	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0192611_31	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0192611_31	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0192611_32	K06909	344.2	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0192611_32	phrog_3717	166.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0192611_32	UniRef90_A0A395X9V4	807.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0192611_32	33035.JPJF01000106_gene3136	419.0	0	Terminase small subunit	N/A
Pfam	UHGV-0192611_32	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0192611_32	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0192611_32	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0192611_32	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0192611_32	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0192611_33	phrog_533	280.1	0	portal protein	head and packaging
UniRef90	UHGV-0192611_33	UniRef90_A0A1C6CDM8	697.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0192611_33	33035.JPJF01000106_gene3135	535.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0192611_33	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0192611_34	phrog_581	276.3	0	minor head protein	head and packaging
UniRef90	UHGV-0192611_34	UniRef90_A0A395X791	768.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0192611_34	476272.RUMHYD_01761	416.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0192611_34	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0192611_34	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0192611_34	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0192611_35	phrog_3754	117.5	7.7e-35	N/A	unknown function
eggNOG-mapper	UHGV-0192611_35	476272.RUMHYD_01764	174.0	0	N/A	N/A
UniRef90	UHGV-0192611_36	UniRef90_A0A395X7A4	182.0	0	CTP synthase	N/A
eggNOG-mapper	UHGV-0192611_36	476272.RUMHYD_01766	120.0	2.16e-34	N/A	N/A
UniRef90	UHGV-0192611_37	UniRef90_A0A843HPX3	52.4	0.000000161	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0192611_37	1235790.C805_00057	62.0	0.00000000000435	N/A	N/A
structural_annotation	UHGV-0192611_37	PF13404,TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-0192611_38	K19090	128.9	4.2e-38	cas5t; CRISPR-associated protein Cas5t	N/A
UniRef90	UHGV-0192611_38	UniRef90_UPI0015707911	201.0	0	CRISPR-associated protein Cas5	N/A
eggNOG-mapper	UHGV-0192611_38	37659.JNLN01000001_gene2340	112.0	2.04e-27	CRISPR-associated protein Cas5	N/A
PADLOC	UHGV-0192611_38	cd09658	53.5	0.0000000000000019	CAS-I-B; effector_G5	CRISPR-CAS
COG	UHGV-0192611_38	COG1688	N/A	N/A	CRISPR/Cas system-associated protein Cas5, RAMP superfamily	N/A
structural_annotation	UHGV-0192611_38	PF09704,TIGR01895,COG1688	N/A	N/A	N/A	N/A
PHROG	UHGV-0192611_41	phrog_31631	67.9	9.1e-20	N/A	unknown function
PHROG	UHGV-0192611_42	phrog_21718	126.5	1.3e-37	N/A	unknown function
eggNOG-mapper	UHGV-0192611_42	476272.RUMHYD_01768	118.0	5.33e-32	N/A	N/A
PHROG	UHGV-0192611_43	phrog_22984	96.7	1.3e-28	N/A	unknown function
PHROG	UHGV-0192611_44	phrog_16490	193.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0192611_44	397290.C810_01328	189.0	0	N/A	N/A
PHROG	UHGV-0192611_45	phrog_20016	205.7	0	N/A	unknown function
UniRef90	UHGV-0192611_45	UniRef90_A0A285PT46	165.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0192611_45	397290.C810_05214	184.0	0	N/A	N/A
structural_annotation	UHGV-0192611_45	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0192611_46	phrog_28802	221.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0192611_46	476272.RUMHYD_01772	197.0	0	N/A	N/A