UHGV-0193010 (vOTU-020034)

Viral Genome: UHGV-0193010

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0193010
vOTU ID	vOTU-020034
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN05826613_a1_ct46023_vs1@linear@Myoviridae__sp._ctaXh1
Associated BioSample	SAMN05826613
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.78 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9811
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.31
Jumbo phage	No

Genome content
Genome length (bp)	38,297
GC content	39.67%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	51
CDS density	90%
Average CDS length (bps)	675.12
Total tRNA genes	4
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 61.78)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0193010_1	658655.HMPREF0988_00895	91.3	7.67e-22	N/A	N/A
structural_annotation	UHGV-0193010_1	PF16677	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0193010_2	PF13069	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0193010_4	PF06004,NF033216,COG4568	N/A	N/A	N/A	N/A
PHROG	UHGV-0193010_7	phrog_1233	90.0	2.9e-26	N/A	unknown function
eggNOG-mapper	UHGV-0193010_7	357809.Cphy_2967	85.5	4.84e-20	N/A	N/A
PHROG	UHGV-0193010_10	phrog_1048	161.6	0	N/A	unknown function
UniRef90	UHGV-0193010_10	UniRef90_A0A395V4Z5	278.0	0	N/A	N/A
eggNOG-mapper	UHGV-0193010_10	457412.RSAG_01107	266.0	0	N/A	N/A
Pfam	UHGV-0193010_10	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0193010_10	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0193010_10	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-0193010_11	phrog_918	93.6	1.1e-27	N/A	unknown function
UniRef90	UHGV-0193010_11	UniRef90_UPI00156D5D02	164.0	0	N/A	N/A
eggNOG-mapper	UHGV-0193010_11	537007.BLAHAN_05515	154.0	0	N/A	N/A
Pfam	UHGV-0193010_11	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0193010_11	PF19791	N/A	N/A	N/A	N/A
KOfam	UHGV-0193010_12	K03744	156.4	0	lemA; LemA protein	N/A
PHROG	UHGV-0193010_12	phrog_1383	166.3	0	virion structural protein	head and packaging
UniRef90	UHGV-0193010_12	UniRef90_A0A893W810	337.0	0	LemA family protein	N/A
eggNOG-mapper	UHGV-0193010_12	742735.HMPREF9467_00879	286.0	0	LemA family	N/A
Pfam	UHGV-0193010_12	PF04011	N/A	N/A	LemA family	LemA
COG	UHGV-0193010_12	COG1704	N/A	N/A	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	N/A
structural_annotation	UHGV-0193010_12	PF04011,NF040966,COG1704	N/A	N/A	N/A	N/A
PHROG	UHGV-0193010_13	phrog_3886	311.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0193010_13	742740.HMPREF9474_02292	334.0	0	N/A	N/A
PHROG	UHGV-0193010_16	phrog_38	150.6	8.40779e-45	terminase large subunit	head and packaging
UniRef90	UHGV-0193010_16	UniRef90_A0A8D9PG33	490.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0193010_16	1232453.BAIF02000058_gene1623	511.0	0	TIGRFAM Phage	N/A
COG	UHGV-0193010_16	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0193010_16	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
UniRef90	UHGV-0193010_17	UniRef90_A0A893WAZ5	208.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0193010_17	1232453.BAIF02000058_gene1624	124.0	2.67e-34	N/A	N/A
structural_annotation	UHGV-0193010_17	PF04545,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0193010_18	phrog_64	156.6	0	portal protein	head and packaging
UniRef90	UHGV-0193010_18	UniRef90_A0A396PR41	919.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0193010_18	476272.RUMHYD_01943	332.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0193010_18	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0193010_18	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0193010_19	phrog_2468	53.0	0.0000000000000043	head morphogenesis	head and packaging
UniRef90	UHGV-0193010_19	UniRef90_A0A396PS39	370.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0193010_19	370623.Q1WDG7_9CAUD	56.6	0.00000124	Phage Mu protein F like protein	N/A
Pfam	UHGV-0193010_19	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
structural_annotation	UHGV-0193010_19	PF04233,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-0193010_20	phrog_374	214.6	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0193010_20	UniRef90_A0A0H3N242	196.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0193010_20	357276.EL88_11255	201.0	0	N/A	N/A
structural_annotation	UHGV-0193010_21	PF14265,NF038403	N/A	N/A	N/A	N/A
PHROG	UHGV-0193010_22	phrog_422	213.8	0	major head protein	head and packaging
UniRef90	UHGV-0193010_22	UniRef90_A0A396PR42	477.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0193010_22	764291.STRUR_2102	295.0	0	N/A	N/A
Pfam	UHGV-0193010_22	PF19821	N/A	N/A	Phage capsid protein	Phage_capsid_2
structural_annotation	UHGV-0193010_22	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0193010_24	397290.C810_01402	96.7	1.52e-24	N/A	N/A
Pfam	UHGV-0193010_24	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
eggNOG-mapper	UHGV-0193010_25	1232453.BAIF02000058_gene1630	108.0	8.37e-29	N/A	N/A
PHROG	UHGV-0193010_26	phrog_5	42.0	0.000000000018	tail completion or Neck1 protein	connector
UniRef90	UHGV-0193010_26	UniRef90_UPI001BBD4500	202.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0193010_26	397290.C810_01411	115.0	2.13e-30	N/A	N/A
AcrCatalog	UHGV-0193010_26	cluster_24841	77.0	8.04e-20	NA	N/A
structural_annotation	UHGV-0193010_26	PF17395,TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0193010_27	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0193010_28	phrog_158	49.9	0.000000000000059	major tail protein	tail
UniRef90	UHGV-0193010_28	UniRef90_A0A415D4T9	220.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0193010_28	1232453.BAIF02000058_gene1634	141.0	2.18995e-41	N/A	N/A
Pfam	UHGV-0193010_28	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-0193010_28	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0193010_31	phrog_167	313.2	0	tail length tape measure protein	tail
UniRef90	UHGV-0193010_31	UniRef90_A0A396PS29	1284.0	0	SLT domain-containing protein	N/A
eggNOG-mapper	UHGV-0193010_31	397290.C810_01419	337.0	0	Transglycosylase SLT domain	N/A
Pfam	UHGV-0193010_31	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
COG	UHGV-0193010_31	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
PHROG	UHGV-0193010_32	phrog_1194	108.9	2.7e-32	N/A	unknown function
eggNOG-mapper	UHGV-0193010_32	60520.HR47_13415	76.6	2.22e-16	N/A	N/A
Pfam	UHGV-0193010_32	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0193010_32	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0193010_33	phrog_6616	583.8	0	tail protein	tail
UniRef90	UHGV-0193010_33	UniRef90_A0A1C5RZB4	475.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0193010_33	476272.RUMHYD_01992	345.0	0	N/A	N/A
structural_annotation	UHGV-0193010_33	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0193010_34	phrog_7389	63.9	1.1e-18	tail fiber protein	tail
UniRef90	UHGV-0193010_34	UniRef90_UPI000E40D12B	351.0	0	InlB B-repeat-containing protein	N/A
eggNOG-mapper	UHGV-0193010_34	35760.BCHO_0826	130.0	3.81e-30	Listeria-Bacteroides repeat domain (List_Bact_rpt)	N/A
Pfam	UHGV-0193010_34	PF09479	N/A	N/A	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
NCBIFam	UHGV-0193010_34	TIGR02543.1	N/A	N/A	TIGR02543 family repeat protein	N/A
structural_annotation	UHGV-0193010_34	PF05895,TIGR03900,COG5608	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0193010_35	PF07041	N/A	N/A	N/A	N/A
PHROG	UHGV-0193010_37	phrog_17147	230.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0193010_37	33035.JPJF01000043_gene1001	208.0	0	N/A	N/A
KOfam	UHGV-0193010_38	K00986	74.3	1.6e-21	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0193010_38	phrog_1423	156.6	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0193010_38	UniRef90_A0A1C5N0E2	601.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
eggNOG-mapper	UHGV-0193010_38	33035.JPJF01000043_gene1000	245.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-0193010_38	icity0040	54.7	4.2e-16	RT (reverse transcriptase)	CRISPR-CAS
COG	UHGV-0193010_38	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0193010_38	PF00078,MF_04065,TIGR04416,COG3344	N/A	N/A	N/A	N/A
UniRef90	UHGV-0193010_40	UniRef90_A0A2V2D4A1	53.5	0.0000000193	XkdX family protein	N/A
eggNOG-mapper	UHGV-0193010_40	411468.CLOSCI_01507	46.6	0.00000177	Phage uncharacterised protein (Phage_XkdX)	N/A
Pfam	UHGV-0193010_40	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
structural_annotation	UHGV-0193010_40	PF09693,TIGR01669	N/A	N/A	N/A	N/A
PHROG	UHGV-0193010_41	phrog_937	75.1	9.5e-22	hemolysin	other
eggNOG-mapper	UHGV-0193010_41	411459.RUMOBE_01081	107.0	1.31e-28	N/A	N/A
PHROG	UHGV-0193010_42	phrog_1129	83.5	1.3e-24	holin	lysis
UniRef90	UHGV-0193010_42	UniRef90_A0A893W7Y5	146.0	8.82818e-44	Phage holin family protein	N/A
eggNOG-mapper	UHGV-0193010_42	1121115.AXVN01000006_gene2171	144.0	6.44597e-44	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0193010_42	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0193010_42	PF16079	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0193010_43	PF13384,NF001074,COG3677	N/A	N/A	N/A	N/A
KOfam	UHGV-0193010_44	K07273	182.0	0	acm; lysozyme	N/A
PHROG	UHGV-0193010_44	phrog_291	145.9	3.09687e-43	endolysin	lysis
UniRef90	UHGV-0193010_44	UniRef90_D4M5A7	691.0	0	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	N/A
eggNOG-mapper	UHGV-0193010_44	515620.EUBELI_01316	201.0	0	Glycoside Hydrolase Family 25-like lysozyme endolysin	N/A
Pfam	UHGV-0193010_44	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0193010_44	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0193010_44	PF01183,NF003627,COG3757,COG5492	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0193010_45	622312.ROSEINA2194_00523	62.0	0.000000000236	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine	N/A
COG	UHGV-0193010_45	COG0621	N/A	N/A	tRNA A37 methylthiotransferase MiaB	N/A
KOfam	UHGV-0193010_46	K06400	331.0	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0193010_46	phrog_95	373.3	0	integrase	integration and excision
UniRef90	UHGV-0193010_46	UniRef90_UPI00131A09CC	793.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0193010_46	411468.CLOSCI_00582	636.0	0	Recombinase	N/A
Pfam	UHGV-0193010_46	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0193010_46	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0193010_46	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0193010_46	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0193010_46	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-0193010_47	UniRef90_A0A173VJ11	330.0	0	Predicted membrane protein	N/A
eggNOG-mapper	UHGV-0193010_47	411461.DORFOR_01127	359.0	0	N/A	N/A
AcrCatalog	UHGV-0193010_47	cluster_71895	114.0	1.24e-32	NA	N/A
structural_annotation	UHGV-0193010_47	PF11611,PF03843,MF_00791,MF_01959,TIGR03943,NF003465,COG3065,COG2967	N/A	N/A	N/A	N/A
PHROG	UHGV-0193010_49	phrog_87	73.8	1.6e-21	metallo-protease	other
UniRef90	UHGV-0193010_49	UniRef90_UPI001C0252A2	243.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0193010_49	1235802.C823_04751	178.0	0	IrrE N-terminal-like domain	N/A
Pfam	UHGV-0193010_49	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0193010_49	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0193010_49	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0193010_50	K07729	42.1	0.000000000013	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0193010_50	phrog_8	64.3	2.8e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0193010_50	UniRef90_A0A373MWG9	232.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0193010_50	411459.RUMOBE_00961	149.0	2.8026e-44	Bacteriophage CI repressor helix-turn-helix domain	N/A
Pfam	UHGV-0193010_50	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0193010_50	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-0193010_50	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A