UHGV-0193340 (vOTU-011348)

Viral Genome: UHGV-0193340

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0193340
vOTU ID	vOTU-011348
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN05827089_a1_ct4847_vs1@linear@Unclassified_virus__sp._ct7lr1
Associated BioSample	SAMN05827089
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9827
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.23
Jumbo phage	No

Genome content
Genome length (bp)	42,701
GC content	57.91%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	59
CDS density	94%
Average CDS length (bps)	681.51
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0193340_2	K06909	131.6	6.4e-39	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0193340_2	phrog_2	126.8	2.6e-37	terminase large subunit	head and packaging
UniRef90	UHGV-0193340_2	UniRef90_A0A810Q5R0	613.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0193340_2	1410650.JHWL01000003_gene2834	599.0	0	N/A	N/A
Pfam	UHGV-0193340_2	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0193340_2	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0193340_2	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0193340_3	phrog_511	213.8	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0193340_3	1410650.JHWL01000003_gene2827	325.0	0	N/A	N/A
structural_annotation	UHGV-0193340_3	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0193340_4	phrog_156	306.3	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0193340_4	1410650.JHWL01000003_gene2833	535.0	0	N/A	N/A
structural_annotation	UHGV-0193340_4	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0193340_5	phrog_13908	187.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0193340_5	1410650.JHWL01000003_gene2831	127.0	1.23e-31	N/A	N/A
PHROG	UHGV-0193340_6	phrog_1357	242.1	0	major head protein	head and packaging
UniRef90	UHGV-0193340_6	UniRef90_A0A2V2CFL5	395.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0193340_6	1410650.JHWL01000003_gene2830	290.0	0	N/A	N/A
Pfam	UHGV-0193340_6	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0193340_6	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0193340_6	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0193340_7	phrog_15239	44.5	0.0000000000018	N/A	unknown function
PHROG	UHGV-0193340_8	phrog_12105	114.2	6.4e-34	N/A	unknown function
eggNOG-mapper	UHGV-0193340_8	1226322.HMPREF1545_03850	56.2	0.0000000477	N/A	N/A
eggNOG-mapper	UHGV-0193340_9	537007.BLAHAN_05255	68.2	0.00000000225	N/A	N/A
UniRef90	UHGV-0193340_11	UniRef90_R5DCX9	188.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0193340_11	1410650.JHWL01000003_gene2815	129.0	1.56e-30	N/A	N/A
eggNOG-mapper	UHGV-0193340_12	1232449.BAHV02000016_gene1805	531.0	0	N/A	N/A
structural_annotation	UHGV-0193340_13	PF18962,NF011773	N/A	N/A	N/A	N/A
KOfam	UHGV-0193340_14	K16628	40.4	0.0000000000071	COL7A; collagen type VII alpha	N/A
Pfam	UHGV-0193340_14	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0193340_14	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
eggNOG-mapper	UHGV-0193340_15	1232443.BAIA02000078_gene14	56.6	0.00000276	nuclear chromosome segregation	N/A
COG	UHGV-0193340_15	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
COG	UHGV-0193340_16	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
KOfam	UHGV-0193340_17	K03651	59.6	4.4e-17	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	N/A
PHROG	UHGV-0193340_17	phrog_7158	60.1	2.9e-17	N/A	unknown function
UniRef90	UHGV-0193340_17	UniRef90_A0A1E8F0N5	71.2	0.00000000191	3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA	N/A
Pfam	UHGV-0193340_17	PF00149	N/A	N/A	Calcineurin-like phosphoesterase	Metallophos
structural_annotation	UHGV-0193340_17	PF02368,PF09423,MF_00575,NF003743,NF005261,COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-0193340_18	phrog_937	47.6	0.00000000000027	hemolysin	other
eggNOG-mapper	UHGV-0193340_18	1519439.JPJG01000023_gene533	70.9	0.0000000000000287	N/A	N/A
PHROG	UHGV-0193340_20	phrog_13256	61.3	8.9e-18	N/A	unknown function
eggNOG-mapper	UHGV-0193340_20	428125.CLOLEP_01907	75.9	1.98e-17	N/A	N/A
KOfam	UHGV-0193340_21	K01447	110.6	1.8e-32	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0193340_21	phrog_1794	110.3	2e-32	amidase	lysis
UniRef90	UHGV-0193340_21	UniRef90_A0A3D4VSU2	161.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0193340_21	397290.C810_00440	149.0	2.33e-39	Ami_2	N/A
Pfam	UHGV-0193340_21	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0193340_21	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0193340_21	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
UniRef90	UHGV-0193340_22	UniRef90_A0A843IZ65	63.5	0.0000000000106	Sigma70_r4 domain-containing protein	N/A
Pfam	UHGV-0193340_22	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
COG	UHGV-0193340_22	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0193340_22	PF04545,MF_00245,TIGR02985,COG2739	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0193340_23	PF11950,NF008958	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0193340_24	PF18812,COG2929	N/A	N/A	N/A	N/A
PHROG	UHGV-0193340_25	phrog_36767	61.3	1.1e-17	N/A	unknown function
UniRef90	UHGV-0193340_25	UniRef90_UPI00067E7E25	79.7	8.19e-18	N/A	N/A
UniRef90	UHGV-0193340_28	UniRef90_A0A7M1RS47	61.6	0.00000000478	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0193340_28	1378168.N510_03079	69.7	0.00000000000417	N/A	N/A
KOfam	UHGV-0193340_29	K14059	133.7	2.4e-39	int; integrase	N/A
PHROG	UHGV-0193340_29	phrog_1	144.9	5.80138e-43	integrase	integration and excision
UniRef90	UHGV-0193340_29	UniRef90_A0A2Z4QB94	313.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0193340_29	641112.ACOK01000111_gene1860	112.0	1.58e-25	Phage integrase family	N/A
Pfam	UHGV-0193340_29	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0193340_29	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0193340_29	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
COG	UHGV-0193340_30	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0193340_30	PF01381,MF_02017,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0193340_33	K22300	50.7	0.000000000000036	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0193340_33	phrog_8	43.6	0.0000000000055	transcriptional regulator	transcription regulation
UniRef90	UHGV-0193340_33	UniRef90_A0A1Y4L0A2	109.0	2.53e-28	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0193340_33	411471.SUBVAR_05818	97.4	1.83e-24	sequence-specific DNA binding	N/A
Pfam	UHGV-0193340_33	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0193340_33	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0193340_33	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0193340_36	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0193340_39	UniRef90_A0A098GES5	104.0	4e-27	Putative phage associated protein	N/A
structural_annotation	UHGV-0193340_39	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0193340_41	PF05082	N/A	N/A	N/A	N/A
KOfam	UHGV-0193340_44	K00558	154.7	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0193340_44	phrog_363	239.9	0	DNA methyltransferase	other
UniRef90	UHGV-0193340_44	UniRef90_G4KRB8	332.0	0	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-0193340_44	693746.OBV_01900	332.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-0193340_44	DruM2_00001	116.9	2.5e-34	DNA cytosine methylase	Druantia
Pfam	UHGV-0193340_44	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0193340_44	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0193340_44	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0193340_44	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0193340_45	phrog_924	43.4	0.0000000000071	N/A	unknown function
UniRef90	UHGV-0193340_45	UniRef90_UPI000F636DD2	53.5	0.0000011	N/A	N/A
Pfam	UHGV-0193340_45	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-0193340_46	phrog_3136	130.6	3.8e-39	N/A	unknown function
UniRef90	UHGV-0193340_46	UniRef90_UPI001C00EDA4	123.0	1.09e-32	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0193340_46	642492.Clole_1416	50.8	0.00000658	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
Pfam	UHGV-0193340_46	PF04266	N/A	N/A	ASCH domain	ASCH
COG	UHGV-0193340_46	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0193340_46	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0193340_48	phrog_38832	44.6	0.0000000000022	N/A	unknown function
eggNOG-mapper	UHGV-0193340_48	665956.HMPREF1032_03087	53.5	0.0000000638	N/A	N/A
PHROG	UHGV-0193340_52	phrog_190	107.1	1.4e-31	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0193340_52	UniRef90_UPI0006C2AC63	124.0	1.41e-33	N/A	N/A
eggNOG-mapper	UHGV-0193340_52	693746.OBV_25250	117.0	1.32e-31	N/A	N/A
Pfam	UHGV-0193340_52	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0193340_52	PF06356	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0193340_56	665956.HMPREF1032_03087	55.5	0.0000000166	N/A	N/A
PHROG	UHGV-0193340_57	phrog_21498	304.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0193340_57	78346.BRUM_0376	262.0	0	DNA binding	N/A
COG	UHGV-0193340_57	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0193340_57	PF05869,TIGR01712	N/A	N/A	N/A	N/A
PHROG	UHGV-0193340_58	phrog_3584	119.7	1.7e-35	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0193340_58	537013.CLOSTMETH_02141	84.0	4e-17	N/A	N/A
structural_annotation	UHGV-0193340_58	PF21578,MF_00360	N/A	N/A	N/A	N/A