UHGV-0194275 (vOTU-029069)

Viral Genome: UHGV-0194275

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0194275
vOTU ID	vOTU-029069
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN09781752_a1_ct87753_vs1@Siphoviridae__sp._ctkat1
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.29 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9827
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.99
Jumbo phage	No

Genome content
Genome length (bp)	23,540
GC content	40.47%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	44
CDS density	91%
Average CDS length (bps)	484.77
Total tRNA genes	2
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 52.29)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0194275_1	phrog_3266	95.1	5.3e-28	tail completion	connector
eggNOG-mapper	UHGV-0194275_1	476272.RUMHYD_01781	152.0	1.12104e-44	N/A	N/A
structural_annotation	UHGV-0194275_1	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0194275_2	phrog_556	53.6	3.4e-16	minor head protein	head and packaging
UniRef90	UHGV-0194275_2	UniRef90_UPI000E4989EB	275.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0194275_2	476272.RUMHYD_01780	144.0	5.43003e-42	N/A	N/A
structural_annotation	UHGV-0194275_2	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0194275_3	phrog_3366	96.8	1.9e-28	N/A	unknown function
eggNOG-mapper	UHGV-0194275_3	476272.RUMHYD_01779	156.0	0	N/A	N/A
structural_annotation	UHGV-0194275_3	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0194275_4	phrog_1129	76.4	2.5e-22	holin	lysis
UniRef90	UHGV-0194275_4	UniRef90_A0A395X7B2	173.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0194275_4	411461.DORFOR_00721	114.0	2.51e-32	N/A	N/A
Pfam	UHGV-0194275_4	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0194275_4	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0194275_5	phrog_918	124.4	2.7e-37	N/A	unknown function
UniRef90	UHGV-0194275_5	UniRef90_UPI0004D82A84	162.0	0	N/A	N/A
eggNOG-mapper	UHGV-0194275_5	357809.Cphy_2966	154.0	0	N/A	N/A
Pfam	UHGV-0194275_5	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0194275_5	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-0194275_6	phrog_541	75.8	9.8e-28	head-tail adaptor	connector
eggNOG-mapper	UHGV-0194275_6	476272.RUMHYD_01778	88.2	2.74e-19	N/A	N/A
PHROG	UHGV-0194275_7	phrog_544	167.6	0	major head protein	head and packaging
UniRef90	UHGV-0194275_7	UniRef90_A0A395X7A1	721.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0194275_7	1232453.BAIF02000011_gene3359	387.0	0	N/A	N/A
Pfam	UHGV-0194275_7	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-0194275_7	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0194275_8	phrog_194	67.2	3e-19	head scaffolding protein	head and packaging
UniRef90	UHGV-0194275_8	UniRef90_UPI001D14C9C8	186.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0194275_8	476272.RUMHYD_01775	201.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0194275_8	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-0194275_9	phrog_28802	221.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0194275_9	476272.RUMHYD_01772	197.0	0	N/A	N/A
PHROG	UHGV-0194275_10	phrog_20016	207.5	0	N/A	unknown function
UniRef90	UHGV-0194275_10	UniRef90_A0A285PT46	170.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0194275_10	397290.C810_05214	187.0	0	N/A	N/A
structural_annotation	UHGV-0194275_10	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0194275_11	phrog_559	84.4	2.2e-24	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0194275_11	UniRef90_A6TQW0	86.3	0.00000000000000171	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-0194275_11	293826.Amet_2424	86.3	2.87e-16	Restriction endonuclease	N/A
Pfam	UHGV-0194275_11	PF13391	N/A	N/A	HNH endonuclease	HNH_2
COG	UHGV-0194275_11	COG3440	N/A	N/A	Predicted restriction endonuclease	N/A
structural_annotation	UHGV-0194275_11	PF05265	N/A	N/A	N/A	N/A
PHROG	UHGV-0194275_12	phrog_16490	172.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0194275_12	397290.C810_01328	170.0	0	N/A	N/A
PHROG	UHGV-0194275_13	phrog_22984	90.0	1.5e-26	N/A	unknown function
PHROG	UHGV-0194275_14	phrog_21718	135.8	1.8e-40	N/A	unknown function
eggNOG-mapper	UHGV-0194275_14	476272.RUMHYD_01768	129.0	2.19e-36	N/A	N/A
PHROG	UHGV-0194275_15	phrog_374	188.6	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0194275_15	UniRef90_A0A0H3N242	217.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0194275_15	397290.C810_05173	193.0	0	N/A	N/A
UniRef90	UHGV-0194275_16	UniRef90_A0A395X7A4	181.0	0	CTP synthase	N/A
eggNOG-mapper	UHGV-0194275_16	476272.RUMHYD_01766	123.0	1.85e-35	N/A	N/A
PHROG	UHGV-0194275_17	phrog_3754	112.9	2.1e-33	N/A	unknown function
eggNOG-mapper	UHGV-0194275_17	476272.RUMHYD_01764	175.0	0	N/A	N/A
PHROG	UHGV-0194275_18	phrog_581	262.6	0	minor head protein	head and packaging
UniRef90	UHGV-0194275_18	UniRef90_A0A395X791	759.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0194275_18	476272.RUMHYD_01761	415.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0194275_18	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0194275_18	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0194275_18	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0194275_22	phrog_533	273.0	0	portal protein	head and packaging
UniRef90	UHGV-0194275_22	UniRef90_A0A1C6CDM8	701.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0194275_22	33035.JPJF01000106_gene3135	533.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0194275_22	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0194275_24	K06909	380.5	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0194275_24	phrog_3717	145.0	2.39622e-43	terminase large subunit	head and packaging
UniRef90	UHGV-0194275_24	UniRef90_A0A6L8SYJ6	932.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0194275_24	33035.JPJF01000106_gene3136	527.0	0	Terminase small subunit	N/A
Pfam	UHGV-0194275_24	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0194275_24	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0194275_24	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0194275_24	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0194275_24	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0194275_31	PF06107,COG4481	N/A	N/A	N/A	N/A
PHROG	UHGV-0194275_32	phrog_8684	99.6	1.3e-29	N/A	unknown function
UniRef90	UHGV-0194275_32	UniRef90_A0A3A6GQT2	194.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0194275_32	457412.RSAG_01162	104.0	1.76e-26	YopX protein	N/A
Pfam	UHGV-0194275_32	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0194275_32	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0194275_32	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0194275_33	phrog_20593	58.7	2.1e-17	N/A	unknown function
structural_annotation	UHGV-0194275_33	PF07870,TIGR02501	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-0194275_35	cluster_11670	43.9	0.0000000156	NA	N/A
PHROG	UHGV-0194275_36	phrog_15198	47.4	0.00000000000027	N/A	unknown function
UniRef90	UHGV-0194275_36	UniRef90_A0A3E5EPV7	125.0	4.51e-35	N/A	N/A
eggNOG-mapper	UHGV-0194275_36	658655.HMPREF0988_00863	50.8	0.00000565	N/A	N/A
Pfam	UHGV-0194275_36	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-0194275_37	phrog_419	106.0	3.9e-31	N/A	unknown function
UniRef90	UHGV-0194275_37	UniRef90_A6MAI4	153.0	0	Gp119	N/A
eggNOG-mapper	UHGV-0194275_37	768486.EHR_02665	154.0	0	N/A	N/A
structural_annotation	UHGV-0194275_37	PF14083	N/A	N/A	N/A	N/A
PHROG	UHGV-0194275_38	phrog_4601	44.9	0.0000000000018	N/A	unknown function
structural_annotation	UHGV-0194275_38	PF17888	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0194275_39	397290.C810_01505	140.0	2.77037e-42	N/A	N/A
KOfam	UHGV-0194275_40	K19779	56.3	4.9e-16	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	N/A
PHROG	UHGV-0194275_40	phrog_599	57.7	3e-16	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0194275_40	UniRef90_A0A317UED7	115.0	1.11e-32	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-0194275_40	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0194275_40	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0194275_40	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
UniRef90	UHGV-0194275_42	UniRef90_A0A373P4I4	63.5	0.0000000000198	Winged helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0194275_42	PF12840	N/A	N/A	Helix-turn-helix domain	HTH_20
structural_annotation	UHGV-0194275_42	PF01726,COG0640	N/A	N/A	N/A	N/A
PHROG	UHGV-0194275_43	phrog_17690	77.4	1.5e-22	N/A	unknown function
eggNOG-mapper	UHGV-0194275_43	476272.RUMHYD_03925	115.0	2.08e-32	N/A	N/A