UHGV-0195701 (vOTU-023098)

Viral Genome: UHGV-0195701

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0195701
vOTU ID	vOTU-023098
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN05826579_a1_ct1925@circular@Siphoviridae__sp._ctJcJ925
Associated BioSample	SAMN05826579
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.84 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9817
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.74
Jumbo phage	No

Genome content
Genome length (bp)	28,418
GC content	58.45%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	40
CDS density	94%
Average CDS length (bps)	665.55
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 79.84)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0195701_2	phrog_501	100.5	1.2e-29	head closure Hc1	connector
UniRef90	UHGV-0195701_2	UniRef90_A0A0R1K4H9	130.0	3.37e-37	N/A	N/A
eggNOG-mapper	UHGV-0195701_2	665950.HMPREF1025_02528	139.0	3.59994e-41	N/A	N/A
structural_annotation	UHGV-0195701_2	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0195701_3	phrog_137	111.4	4e-33	head-tail adaptor Ad1	connector
UniRef90	UHGV-0195701_3	UniRef90_UPI0019617F49	162.0	0	phage Gp19/Gp15/Gp42 family protein	N/A
eggNOG-mapper	UHGV-0195701_3	1280698.AUJS01000007_gene1040	153.0	0	Phage protein Gp19/Gp15/Gp42	N/A
Pfam	UHGV-0195701_3	PF09355	N/A	N/A	N/A	Phage_Gp19
structural_annotation	UHGV-0195701_3	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-0195701_4	phrog_32396	128.0	2.6e-38	N/A	unknown function
UniRef90	UHGV-0195701_4	UniRef90_A0A564SB39	451.0	0	Phage capsid family protein	N/A
eggNOG-mapper	UHGV-0195701_4	1321784.HMPREF1987_01073	362.0	0	Phage capsid family	N/A
Pfam	UHGV-0195701_4	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0195701_4	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0195701_4	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0195701_5	phrog_233	94.0	2.3e-27	head scaffolding protein	head and packaging
UniRef90	UHGV-0195701_5	UniRef90_UPI00093990C5	110.0	9.36e-28	N/A	N/A
eggNOG-mapper	UHGV-0195701_5	706433.HMPREF9430_01266	109.0	2.28e-28	N/A	N/A
Pfam	UHGV-0195701_5	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0195701_5	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0195701_6	phrog_17688	304.8	0	N/A	unknown function
UniRef90	UHGV-0195701_6	UniRef90_UPI001960D3D4	643.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0195701_6	936375.HMPREF1152_0677	613.0	0	phage terminase, large subunit	N/A
COG	UHGV-0195701_6	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0195701_6	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0195701_8	phrog_2494	264.7	0	minor head protein	head and packaging
UniRef90	UHGV-0195701_8	UniRef90_UPI001F3BD4CE	216.0	0	polymorphic toxin type 50 domain-containing protein	N/A
eggNOG-mapper	UHGV-0195701_8	663952.SDD27957_07295	189.0	0	N/A	N/A
PHROG	UHGV-0195701_9	phrog_104	282.2	0	portal protein	head and packaging
UniRef90	UHGV-0195701_9	UniRef90_A0A564SBV0	564.0	0	Phage portal protein, SPP1 Gp6-like	N/A
eggNOG-mapper	UHGV-0195701_9	1280698.AUJS01000007_gene1033	547.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0195701_9	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0195701_9	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0195701_10	phrog_338	103.6	2.3e-30	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0195701_10	UniRef90_A0A1C5MK90	169.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0195701_10	1280698.AUJS01000007_gene1032	168.0	0	HNH endonuclease domain protein	N/A
Pfam	UHGV-0195701_10	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0195701_10	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0195701_10	PF01844,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0195701_12	phrog_3584	157.0	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0195701_12	1226322.HMPREF1545_03841	144.0	5.08e-39	N/A	N/A
structural_annotation	UHGV-0195701_12	PF01446,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-0195701_15	phrog_15609	226.5	0	N/A	unknown function
UniRef90	UHGV-0195701_15	UniRef90_UPI001C12751D	150.0	2.7e-39	N/A	N/A
eggNOG-mapper	UHGV-0195701_15	1501230.ET33_21155	146.0	2.34e-38	N/A	N/A
Pfam	UHGV-0195701_15	PF11300	N/A	N/A	N/A	DUF3102
COG	UHGV-0195701_15	COG0188	N/A	N/A	DNA gyrase/topoisomerase IV, subunit A	N/A
structural_annotation	UHGV-0195701_15	PF11300,PF07321,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0195701_16	phrog_8470	229.1	0	N/A	unknown function
UniRef90	UHGV-0195701_16	UniRef90_UPI00195E492B	399.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0195701_16	1378168.N510_01842	409.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0195701_16	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0195701_16	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0195701_17	phrog_38338	81.1	1.4e-23	N/A	unknown function
UniRef90	UHGV-0195701_17	UniRef90_UPI00137B3A8C	69.7	0.00000000000215	Cas9 inhibitor AcrIIA9 family protein	N/A
eggNOG-mapper	UHGV-0195701_17	693746.OBV_24020	111.0	4.3e-30	N/A	N/A
PHROG	UHGV-0195701_19	phrog_986	68.5	8.2e-20	RNA-binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0195701_19	UniRef90_R5KJ01	72.0	0.0000000000000121	N/A	N/A
eggNOG-mapper	UHGV-0195701_19	1440052.EAKF1_ch2034c	49.7	0.00000354	N/A	N/A
Pfam	UHGV-0195701_19	PF12961	N/A	N/A	N/A	DUF3850
structural_annotation	UHGV-0195701_19	PF12961,MF_00684,NF003443,COG4043	N/A	N/A	N/A	N/A
PHROG	UHGV-0195701_22	phrog_7566	87.3	1.1e-25	N/A	unknown function
UniRef90	UHGV-0195701_22	UniRef90_A0A8D9UHC0	94.4	1.21e-23	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-0195701_22	1507.HMPREF0262_00433	102.0	1.59e-27	N/A	N/A
UniRef90	UHGV-0195701_25	UniRef90_UPI000F0633F9	57.4	0.0000000027	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0195701_25	693746.OBV_43260	63.5	0.00000000000172	N/A	N/A
structural_annotation	UHGV-0195701_25	PF09035,TIGR01764	N/A	N/A	N/A	N/A
KOfam	UHGV-0195701_26	K07497	126.9	2.3e-37	K07497; putative transposase	N/A
PHROG	UHGV-0195701_26	phrog_157	215.5	0	transposase	integration and excision
UniRef90	UHGV-0195701_26	UniRef90_A0A1U7NKP4	473.0	0	Transposase	N/A
eggNOG-mapper	UHGV-0195701_26	1410626.JHXB01000005_gene1345	387.0	0	HTH-like domain	N/A
Pfam	UHGV-0195701_26	PF13276	N/A	N/A	HTH-like domain	HTH_21
Pfam	UHGV-0195701_26	PF00665	N/A	N/A	Integrase core domain	rve
Pfam	UHGV-0195701_26	PF13333	N/A	N/A	Integrase core domain	rve_2
NCBIFam	UHGV-0195701_26	NF033516.0	N/A	N/A	IS3 family transposase	N/A
COG	UHGV-0195701_26	COG2801	N/A	N/A	Transposase InsO and inactivated derivatives	N/A
structural_annotation	UHGV-0195701_26	PF00665,NF033516,COG2801	N/A	N/A	N/A	N/A
UniRef90	UHGV-0195701_27	UniRef90_UPI00158A5A10	67.8	0.0000000000326	transposase	N/A
eggNOG-mapper	UHGV-0195701_27	428126.CLOSPI_00849	80.5	7.46e-17	N/A	N/A
Pfam	UHGV-0195701_27	PF20310	N/A	N/A	Transposon related HTH domain protein	HTH_Tnp_2
KOfam	UHGV-0195701_28	K14059	103.5	3.3e-30	int; integrase	N/A
PHROG	UHGV-0195701_28	phrog_1	134.6	9.6e-40	integrase	integration and excision
UniRef90	UHGV-0195701_28	UniRef90_A0A810Q0Y2	778.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0195701_28	693746.OBV_43340	407.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0195701_28	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-0195701_28	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0195701_28	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0195701_28	PF00589,PF13495,MF_02055,TIGR02225,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0195701_29	K01447	96.6	3.7e-28	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0195701_29	phrog_670	118.8	5.5e-35	endolysin	lysis
UniRef90	UHGV-0195701_29	UniRef90_A0A252F607	209.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-0195701_29	411463.EUBVEN_00418	199.0	0	Ami_2	N/A
Pfam	UHGV-0195701_29	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0195701_29	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0195701_29	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0195701_29	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0195701_30	phrog_1129	58.6	8e-17	holin	lysis
UniRef90	UHGV-0195701_30	UniRef90_R5D220	131.0	3.76e-38	Putative holin	N/A
eggNOG-mapper	UHGV-0195701_30	1007096.BAGW01000032_gene1582	111.0	5.29e-31	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0195701_30	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0195701_30	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0195701_31	phrog_1863	71.4	6.8e-21	N/A	unknown function
eggNOG-mapper	UHGV-0195701_31	718252.FP2_04900	110.0	8.24e-31	N/A	N/A
PHROG	UHGV-0195701_32	phrog_372	309.6	0	tail protein	tail
UniRef90	UHGV-0195701_32	UniRef90_A0A3E3E6C0	228.0	0	Pilus assembly protein	N/A
eggNOG-mapper	UHGV-0195701_32	658655.HMPREF0988_00525	187.0	0	the current gene model (or a revised gene model) may contain a frame shift	N/A
Pfam	UHGV-0195701_32	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-0195701_32	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0195701_32	PF05895,MF_04116,NF010681,COG1361	N/A	N/A	N/A	N/A
KOfam	UHGV-0195701_33	K16628	77.9	2.8e-23	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-0195701_33	phrog_3558	279.2	0	tail protein	tail
UniRef90	UHGV-0195701_33	UniRef90_A0A810Q1Y2	790.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0195701_33	1235800.C819_02223	201.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0195701_33	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-0195701_33	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0195701_33	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0195701_33	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
UniRef90	UHGV-0195701_34	UniRef90_UPI001923513F	93.2	1.3e-19	phage tail family protein	N/A
eggNOG-mapper	UHGV-0195701_34	411490.ANACAC_00709	66.2	0.000000000231	phage tail	N/A
COG	UHGV-0195701_34	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0195701_34	PF05709,PF02408,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0195701_35	phrog_58	131.3	1.1e-39	tail length tape measure protein	tail
UniRef90	UHGV-0195701_35	UniRef90_A0A316Q0J4	152.0	2.29e-35	PblA	N/A
eggNOG-mapper	UHGV-0195701_35	1089553.Tph_c23060	247.0	0	lysine exporter protein (LysE YggA)	N/A
COG	UHGV-0195701_35	COG5185	N/A	N/A	Chromosome segregation protein NDC80, interacts with SMC proteins	N/A
structural_annotation	UHGV-0195701_35	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0195701_36	phrog_1633	146.9	5.32493e-44	N/A	unknown function
UniRef90	UHGV-0195701_36	UniRef90_A0A139QHL2	132.0	2.4e-37	N/A	N/A
eggNOG-mapper	UHGV-0195701_36	1121864.OMO_02160	122.0	1.83e-34	N/A	N/A
Pfam	UHGV-0195701_36	PF17318	N/A	N/A	N/A	DUF5361
structural_annotation	UHGV-0195701_36	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-0195701_37	phrog_1526	68.5	8.9e-20	N/A	unknown function
eggNOG-mapper	UHGV-0195701_37	879308.HMPREF9130_1240	58.5	0.000000000475	N/A	N/A
PHROG	UHGV-0195701_38	phrog_117	167.9	0	major tail protein	tail
UniRef90	UHGV-0195701_38	UniRef90_UPI00195F7CB7	243.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0195701_38	875454.BAEW01000017_gene1590	239.0	0	domain, Protein	N/A
COG	UHGV-0195701_38	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0195701_38	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0195701_39	phrog_123	41.3	0.000000000025	tail terminator	connector
eggNOG-mapper	UHGV-0195701_39	1280698.AUJS01000007_gene1043	102.0	8.67e-27	N/A	N/A
structural_annotation	UHGV-0195701_39	PF06141	N/A	N/A	N/A	N/A