UHGV-0195808 (vOTU-126426)

Viral Genome: UHGV-0195808

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0195808
vOTU ID	vOTU-126426
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN09781730_a1_ct114569_vs1@Siphoviridae__sp._ctLyX1
Associated BioSample	SAMN09781730
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.5 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.974
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.84
Jumbo phage	No

Genome content
Genome length (bp)	39,838
GC content	39.62%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	51
CDS density	94%
Average CDS length (bps)	731.12
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 69.5)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0195808_4	phrog_23592	48.7	0.00000000000013	N/A	unknown function
KOfam	UHGV-0195808_5	K04763	169.3	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0195808_5	phrog_1	155.2	0	integrase	integration and excision
UniRef90	UHGV-0195808_5	UniRef90_R9KW75	112.0	4.42e-25	Tyrosine recombinase XerC	N/A
eggNOG-mapper	UHGV-0195808_5	1235794.C811_00953	112.0	7.41e-26	Belongs to the 'phage' integrase family. XerC subfamily	N/A
Pfam	UHGV-0195808_5	PF02899	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
Pfam	UHGV-0195808_5	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0195808_5	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0195808_5	PF00589,PF02899,MF_01808,TIGR02225,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0195808_7	UniRef90_A0A415T7X6	64.7	0.000000000251	ImmA/IrrE family metallo-endopeptidase	N/A
structural_annotation	UHGV-0195808_7	PF13058,MF_00745	N/A	N/A	N/A	N/A
PHROG	UHGV-0195808_10	phrog_1887	158.4	0	tail protein	tail
eggNOG-mapper	UHGV-0195808_10	272562.CA_C1114	100.0	2.4e-20	N/A	N/A
structural_annotation	UHGV-0195808_10	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
KOfam	UHGV-0195808_13	K20283	60.2	2.2e-18	GOLGA4; golgin subfamily A member 4	N/A
PHROG	UHGV-0195808_13	phrog_4211	170.0	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0195808_13	1291050.JAGE01000002_gene3296	166.0	2.81e-38	Phage-related minor tail protein	N/A
Pfam	UHGV-0195808_13	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0195808_13	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0195808_13	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0195808_13	PF10145,MF_04138,TIGR01760,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0195808_14	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0195808_15	phrog_2729	41.0	0.000000000025	virion structural protein	head and packaging
structural_annotation	UHGV-0195808_15	PF06488,PF02368,TIGR01603,COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0195808_17	PF02368,PF18957,MF_04116,NF040788,COG3291,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0195808_18	phrog_774	47.6	0.00000000000034	N/A	unknown function
structural_annotation	UHGV-0195808_20	PF09646	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0195808_22	TIGR02215	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0195808_29	PF03864,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0195808_31	phrog_3313	77.8	9.8e-24	N/A	unknown function
eggNOG-mapper	UHGV-0195808_31	1151292.QEW_0632	70.1	0.000000000516	N/A	N/A
structural_annotation	UHGV-0195808_31	PF09979,TIGR01543,COG3740	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0195808_32	PF00210,MF_01441,NF011597,COG1528	N/A	N/A	N/A	N/A
PHROG	UHGV-0195808_34	phrog_2739	77.3	7.1e-24	portal protein	head and packaging
structural_annotation	UHGV-0195808_34	PF07230,MF_04135,TIGR01537,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0195808_36	phrog_15503	61.2	1.4e-18	N/A	unknown function
UniRef90	UHGV-0195808_36	UniRef90_A0A4Q2LHI6	201.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0195808_36	1308863.U5J9B2_9CAUD	105.0	4.39e-21	N/A	N/A
structural_annotation	UHGV-0195808_36	PF04466,PF17289,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
KOfam	UHGV-0195808_38	K03111	123.1	3.4e-36	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0195808_38	phrog_44	130.4	1.3e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0195808_38	UniRef90_A0A2I0NAG6	136.0	1.16e-38	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0195808_38	768710.DesyoDRAFT_5429	118.0	3.14e-32	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0195808_38	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0195808_38	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0195808_38	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0195808_38	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0195808_38	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
COG	UHGV-0195808_40	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
eggNOG-mapper	UHGV-0195808_42	525268.HMPREF0308_2523	53.9	0.000000161	N/A	N/A
Pfam	UHGV-0195808_42	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
PHROG	UHGV-0195808_43	phrog_19106	184.9	0	N/A	unknown function
UniRef90	UHGV-0195808_43	UniRef90_A0A6L5YG76	175.0	0	GIY-YIG nuclease family protein	N/A
eggNOG-mapper	UHGV-0195808_43	658655.HMPREF0988_00875	155.0	1.4013e-45	N/A	N/A
structural_annotation	UHGV-0195808_43	TIGR01453	N/A	N/A	N/A	N/A
KOfam	UHGV-0195808_46	K07455	165.8	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0195808_46	phrog_148	191.5	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0195808_46	UniRef90_A0A329URJ6	283.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-0195808_46	1408437.JNJN01000039_gene372	271.0	0	RecT family	N/A
Pfam	UHGV-0195808_46	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0195808_46	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0195808_46	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0195808_46	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0195808_47	phrog_674	96.1	2.5e-28	N/A	unknown function
UniRef90	UHGV-0195808_47	UniRef90_A0A0U3FXX5	80.1	0.000000000000115	Phage-related protein	N/A
eggNOG-mapper	UHGV-0195808_47	742740.HMPREF9474_03487	70.9	0.0000000000347	N/A	N/A
Pfam	UHGV-0195808_47	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0195808_47	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-0195808_48	phrog_434	128.0	8.3e-38	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0195808_48	UniRef90_A0A4P9C8Z0	158.0	4.2039e-45	Recombinase	N/A
eggNOG-mapper	UHGV-0195808_48	742765.HMPREF9457_02105	147.0	2.65994e-41	YqaJ viral recombinase family	N/A
Pfam	UHGV-0195808_48	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0195808_48	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0195808_48	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0195808_48	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A