UHGV-0195956 (vOTU-079339)

Viral Genome: UHGV-0195956

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0195956
vOTU ID	vOTU-079339
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN09781723_a1_ct87356_vs1@Myoviridae__sp._ctrRr1
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9775
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.05
Jumbo phage	No

Genome content
Genome length (bp)	34,571
GC content	61.52%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	54
CDS density	90%
Average CDS length (bps)	578.83
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0195956_2	phrog_9	270.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0195956_2	UniRef90_A0A3D1VAR5	759.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0195956_2	1226322.HMPREF1545_00113	703.0	0	Phage Terminase	N/A
Pfam	UHGV-0195956_2	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
Pfam	UHGV-0195956_2	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0195956_2	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0195956_2	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0195956_2	PF03354,PF20441,PF05119,MF_04146,TIGR01547,TIGR01558,COG4626,COG3747	N/A	N/A	N/A	N/A
KOfam	UHGV-0195956_3	K00571	171.1	0	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0195956_3	phrog_67	178.4	0	DNA methyltransferase	other
UniRef90	UHGV-0195956_3	UniRef90_A0A420W5G5	240.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0195956_3	1423758.BN55_09485	219.0	0	DNA methylase	N/A
PADLOC	UHGV-0195956_3	MTase_II_00037	118.0	0	Type II methyltransferase	RM
Pfam	UHGV-0195956_3	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0195956_3	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0195956_3	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0195956_4	phrog_12	179.3	0	portal protein	head and packaging
UniRef90	UHGV-0195956_4	UniRef90_A0A1F2PE41	459.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0195956_4	1121423.JONT01000042_gene1421	444.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0195956_4	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0195956_4	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0195956_4	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0195956_4	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0195956_5	K06904	160.0	0	N/A	N/A
PHROG	UHGV-0195956_5	phrog_80	179.7	0	head maturation protease	head and packaging
UniRef90	UHGV-0195956_5	UniRef90_A0A316NLC8	220.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0195956_5	1235798.C817_04584	206.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0195956_5	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0195956_5	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0195956_5	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0195956_5	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0195956_6	phrog_10	167.1	0	major head protein	head and packaging
UniRef90	UHGV-0195956_6	UniRef90_A0A1Y4R494	392.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0195956_6	396034.A6XMJ6_9CAUD	331.0	0	N-acetylmuramoyl-L-alanine amidase activity	N/A
Pfam	UHGV-0195956_6	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0195956_6	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0195956_6	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0195956_6	PF05065,PF18316,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0195956_7	908340.HMPREF9406_2576	54.7	0.0000000178	N/A	N/A
PHROG	UHGV-0195956_8	phrog_19734	65.9	7.4e-19	N/A	unknown function
eggNOG-mapper	UHGV-0195956_8	999413.HMPREF1094_02006	60.1	0.000000000535	N/A	N/A
PHROG	UHGV-0195956_9	phrog_5	40.0	0.000000000098	tail completion or Neck1 protein	connector
UniRef90	UHGV-0195956_9	UniRef90_A0A3A6N4L9	74.7	0.0000000000000113	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0195956_9	1226322.HMPREF1545_00119	72.4	0.0000000000000154	N/A	N/A
Pfam	UHGV-0195956_9	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0195956_9	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
UniRef90	UHGV-0195956_10	UniRef90_F2BRF4	76.6	4.68e-16	Prophage pi2 protein 38	N/A
eggNOG-mapper	UHGV-0195956_10	1154860.SAG0136_05785	80.9	1.84e-18	N/A	N/A
structural_annotation	UHGV-0195956_10	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
PHROG	UHGV-0195956_11	phrog_88	149.8	1.26117e-44	major tail protein	tail
UniRef90	UHGV-0195956_11	UniRef90_UPI001031AF27	216.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0195956_11	1226322.HMPREF1545_00121	183.0	0	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0195956_11	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0195956_11	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0195956_12	phrog_709	86.2	3.3e-25	N/A	unknown function
eggNOG-mapper	UHGV-0195956_12	1410670.JHXF01000015_gene2298	124.0	4.67e-35	N/A	N/A
structural_annotation	UHGV-0195956_12	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0195956_13	phrog_3033	43.4	0.0000000000049	N/A	unknown function
eggNOG-mapper	UHGV-0195956_13	663278.Ethha_1845	61.2	0.00000000000308	N/A	N/A
PHROG	UHGV-0195956_14	phrog_23464	228.4	0	N/A	unknown function
UniRef90	UHGV-0195956_14	UniRef90_A0A318XNK8	214.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-0195956_14	1211814.CAPG01000074_gene3445	191.0	0	Phage tail tape measure protein TP901	N/A
COG	UHGV-0195956_14	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0195956_14	PF20155,TIGR01760,COG5280	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0195956_15	1232449.BAHV02000010_gene2724	77.8	1.5e-16	N/A	N/A
structural_annotation	UHGV-0195956_15	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0195956_16	phrog_32744	356.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0195956_16	1120998.AUFC01000030_gene2247	206.0	0	N/A	N/A
structural_annotation	UHGV-0195956_16	PF14594,PF21722,NF033848,COG4379	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0195956_17	NF012201	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0195956_19	1408437.JNJN01000040_gene189	75.5	2.61e-16	N/A	N/A
PHROG	UHGV-0195956_20	phrog_1863	64.7	8.4e-19	N/A	unknown function
eggNOG-mapper	UHGV-0195956_20	748224.HMPREF9436_00408	96.7	1.83e-25	N/A	N/A
PHROG	UHGV-0195956_21	phrog_1129	68.2	8.1e-20	holin	lysis
UniRef90	UHGV-0195956_21	UniRef90_UPI001EDED0D7	150.0	1.4013e-45	phage holin family protein	N/A
eggNOG-mapper	UHGV-0195956_21	1007096.BAGW01000032_gene1582	121.0	7.59e-35	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0195956_21	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0195956_21	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-0195956_23	K01447	60.8	2.6e-17	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0195956_23	phrog_15001	156.8	0	endolysin	lysis
UniRef90	UHGV-0195956_23	UniRef90_UPI001EE14AF5	434.0	0	peptidoglycan recognition protein family protein	N/A
eggNOG-mapper	UHGV-0195956_23	552398.HMPREF0866_01156	293.0	0	Ami_2	N/A
Pfam	UHGV-0195956_23	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0195956_23	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0195956_23	PF01510,MF_04111,COG5632	N/A	N/A	N/A	N/A
Pfam	UHGV-0195956_24	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
structural_annotation	UHGV-0195956_24	PF04545,MF_00245,NF001067,COG2771	N/A	N/A	N/A	N/A
UniRef90	UHGV-0195956_26	UniRef90_UPI00164AED9E	95.5	2.91e-23	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0195956_26	1122218.KB893653_gene698	49.7	0.00000317	transcriptional regulator, XRE family	N/A
COG	UHGV-0195956_26	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0195956_26	NF040522,COG2944	N/A	N/A	N/A	N/A
UniRef90	UHGV-0195956_27	UniRef90_R6DRH1	114.0	8.88e-29	Putative TnpX site-specific recombinase	N/A
eggNOG-mapper	UHGV-0195956_27	742738.HMPREF9460_00886	139.0	8.42e-40	N/A	N/A
structural_annotation	UHGV-0195956_27	COG4068	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0195956_29	445972.ANACOL_01878	71.6	0.000000000000108	N/A	N/A
PHROG	UHGV-0195956_31	phrog_16490	189.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0195956_31	1408437.JNJN01000043_gene803	176.0	0	N/A	N/A
eggNOG-mapper	UHGV-0195956_32	1408437.JNJN01000043_gene802	159.0	0	N/A	N/A
UniRef90	UHGV-0195956_33	UniRef90_A0A7M1RTM1	74.7	0.000000000000123	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0195956_33	1378168.N510_03079	102.0	1.91e-24	N/A	N/A
KOfam	UHGV-0195956_34	K14059	107.4	2.1e-31	int; integrase	N/A
PHROG	UHGV-0195956_34	phrog_1	144.0	1.3004e-42	integrase	integration and excision
UniRef90	UHGV-0195956_34	UniRef90_A0A3D4D8C4	357.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0195956_34	693746.OBV_19730	347.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0195956_34	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0195956_34	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0195956_34	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0195956_35	phrog_38135	69.9	2.3e-20	N/A	unknown function
eggNOG-mapper	UHGV-0195956_35	1151292.QEW_0647	72.8	0.000000000000131	N/A	N/A
Pfam	UHGV-0195956_35	PF14020	N/A	N/A	N/A	DUF4236
structural_annotation	UHGV-0195956_35	PF14020,PF21602	N/A	N/A	N/A	N/A
KOfam	UHGV-0195956_37	K22300	60.5	3.5e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0195956_37	phrog_4	49.3	0.00000000000011	transcriptional repressor	transcription regulation
UniRef90	UHGV-0195956_37	UniRef90_A0A174LY22	150.0	2.10195e-44	Antitoxin PezA	N/A
eggNOG-mapper	UHGV-0195956_37	445972.ANACOL_03315	151.0	1.4013e-45	N/A	N/A
Pfam	UHGV-0195956_37	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0195956_37	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0195956_37	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0195956_40	phrog_6058	44.8	0.0000000000013	N/A	unknown function
eggNOG-mapper	UHGV-0195956_40	742738.HMPREF9460_00848	87.4	8.05e-21	N/A	N/A
structural_annotation	UHGV-0195956_40	PF12728,TIGR01764	N/A	N/A	N/A	N/A
PHROG	UHGV-0195956_42	phrog_428	54.8	0.0000000000000022	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0195956_42	UniRef90_A0A8J6MF41	195.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0195956_42	742738.HMPREF9460_04047	97.1	3.3e-21	DnaD domain protein	N/A
COG	UHGV-0195956_42	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0195956_42	PF20714,MF_01177,NF040582,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-0195956_43	K02314	292.9	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0195956_43	phrog_19	239.9	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0195956_43	UniRef90_A0A3A8Z521	491.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0195956_43	1007096.BAGW01000033_gene1616	264.0	0	DnaB-like helicase N terminal domain	N/A
Pfam	UHGV-0195956_43	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0195956_43	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0195956_43	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0195956_43	PF03796,PF00772,MF_04155,NF005240,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0195956_44	phrog_1374	49.1	0.000000000000066	N/A	unknown function
UniRef90	UHGV-0195956_44	UniRef90_A0A482JLT4	53.9	0.0000000403	Putative membrane protein	N/A
eggNOG-mapper	UHGV-0195956_44	1519439.JPJG01000059_gene1913	58.9	0.0000000000749	N/A	N/A
KOfam	UHGV-0195956_46	K03111	141.8	6.69961e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0195956_46	phrog_44	133.2	1.8e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0195956_46	UniRef90_UPI0012489F18	192.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0195956_46	1226322.HMPREF1545_04080	147.0	9.66896e-44	Single-strand binding protein family	N/A
Pfam	UHGV-0195956_46	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0195956_46	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0195956_46	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0195956_46	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0195956_46	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0195956_47	K01520	132.0	4.8e-39	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0195956_47	phrog_135	105.6	4.1e-31	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0195956_47	UniRef90_UPI001D07FBC5	261.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-0195956_47	887929.HMP0721_1278	160.0	0	dUTPase	N/A
Pfam	UHGV-0195956_47	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-0195956_47	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-0195956_47	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0195956_47	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
PHROG	UHGV-0195956_48	phrog_757	127.3	8e-38	DNA methyltransferase	other
UniRef90	UHGV-0195956_48	UniRef90_A0A417JTT5	229.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0195956_48	1095750.HMPREF9970_0173	141.0	1.51e-39	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0195956_48	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0195956_49	PF02882,MF_01576,NF010775,COG0190	N/A	N/A	N/A	N/A
UniRef90	UHGV-0195956_51	UniRef90_A0A8D9PDK2	53.9	0.000000638	Zinc-ribbon containing domain	N/A
PHROG	UHGV-0195956_52	phrog_3584	162.5	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0195956_52	742738.HMPREF9460_00867	212.0	0	N/A	N/A
structural_annotation	UHGV-0195956_52	PF01446,NF041486	N/A	N/A	N/A	N/A
UniRef90	UHGV-0195956_53	UniRef90_UPI001C10554C	55.5	0.00000000535	cysteine-rich KTR domain-containing protein	N/A
Pfam	UHGV-0195956_53	PF14205	N/A	N/A	Cysteine-rich KTR	Cys_rich_KTR
KOfam	UHGV-0195956_54	K07451	45.4	0.0000000000013	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0195956_54	phrog_119	76.8	2.8e-22	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0195956_54	UniRef90_A0A7C6HGS4	115.0	1.23e-31	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0195956_54	755731.Clo1100_0542	107.0	5.16e-29	HNH nucleases	N/A
Pfam	UHGV-0195956_54	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0195956_54	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A