UHGV-0195978 (vOTU-075073)

Viral Genome: UHGV-0195978

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0195978
vOTU ID	vOTU-075073
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN09781735_a1_ct57704_vs1@Myoviridae__sp._ct5QZ1
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.33 (High-quality)
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9794
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.53
Jumbo phage	No

Genome content
Genome length (bp)	30,347
GC content	50.08%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	50
CDS density	95%
Average CDS length (bps)	575.76
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 92.33)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0195978_1	phrog_1863	49.2	0.00000000000006	N/A	unknown function
eggNOG-mapper	UHGV-0195978_1	718252.FP2_04900	60.5	0.0000000000132	N/A	N/A
eggNOG-mapper	UHGV-0195978_2	1347392.CCEZ01000017_gene1158	58.2	0.00000000135	N/A	N/A
KOfam	UHGV-0195978_3	K01448	59.6	4.8e-17	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0195978_3	phrog_435	73.7	3.3e-21	endolysin	lysis
UniRef90	UHGV-0195978_3	UniRef90_A0A2V2GRI9	471.0	0	MurNAc-LAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0195978_3	994573.T472_0210960	95.9	2.17e-21	n-acetylmuramoyl-l-alanine amidase	N/A
Pfam	UHGV-0195978_3	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0195978_3	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0195978_3	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
KOfam	UHGV-0195978_4	K14059	128.7	8e-38	int; integrase	N/A
PHROG	UHGV-0195978_4	phrog_1	126.4	2.8e-37	integrase	integration and excision
UniRef90	UHGV-0195978_4	UniRef90_UPI001E298856	526.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0195978_4	748224.HMPREF9436_03382	273.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0195978_4	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0195978_4	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0195978_4	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A
UniRef90	UHGV-0195978_6	UniRef90_UPI001E2EC555	200.0	0	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0195978_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0195978_6	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0195978_7	phrog_8	49.9	0.000000000000064	transcriptional regulator	transcription regulation
UniRef90	UHGV-0195978_7	UniRef90_UPI001E54DE4F	162.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0195978_7	1378168.N510_01712	82.4	1.68e-17	N/A	N/A
Pfam	UHGV-0195978_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0195978_7	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0195978_8	UniRef90_UPI001967CDDD	86.7	5.38e-21	helix-turn-helix transcriptional regulator	N/A
structural_annotation	UHGV-0195978_8	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0195978_9	UniRef90_UPI001E431871	115.0	6.89e-32	helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0195978_9	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0195978_9	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0195978_10	NF041588	N/A	N/A	N/A	N/A
UniRef90	UHGV-0195978_13	UniRef90_A0A2Z4GU98	156.0	7.00649e-44	Ribonuclease inhibitor	N/A
PHROG	UHGV-0195978_15	phrog_659	196.5	0	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0195978_15	UniRef90_UPI001E5A6693	379.0	0	N/A	N/A
eggNOG-mapper	UHGV-0195978_15	1507.HMPREF0262_00431	237.0	0	N/A	N/A
Pfam	UHGV-0195978_15	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0195978_15	PF06378,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0195978_16	phrog_72	57.5	2e-16	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0195978_16	UniRef90_A0A8D9PDS2	164.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-0195978_16	445972.ANACOL_01825	144.0	1.43003e-41	N/A	N/A
structural_annotation	UHGV-0195978_16	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0195978_17	phrog_7566	51.9	0.000000000000011	N/A	unknown function
eggNOG-mapper	UHGV-0195978_17	693746.OBV_24070	68.9	0.000000000000137	N/A	N/A
KOfam	UHGV-0195978_18	K03111	131.0	1.4e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0195978_18	phrog_44	134.4	7.80001e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0195978_18	UniRef90_UPI001E2A5A6F	224.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0195978_18	445972.ANACOL_01827	125.0	3.06e-35	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0195978_18	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0195978_18	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0195978_18	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0195978_18	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0195978_18	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0195978_19	phrog_9474	93.9	1.9e-27	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0195978_19	UniRef90_UPI001241A3FA	101.0	6.16e-22	phage replication protein	N/A
eggNOG-mapper	UHGV-0195978_19	742740.HMPREF9474_03117	110.0	2.94e-26	N/A	N/A
structural_annotation	UHGV-0195978_19	PF01475,NF006999,COG0735	N/A	N/A	N/A	N/A
PHROG	UHGV-0195978_20	phrog_9804	170.1	0	N/A	unknown function
UniRef90	UHGV-0195978_20	UniRef90_UPI001E312ACC	306.0	0	replicative helicase loader/inhibitor	N/A
eggNOG-mapper	UHGV-0195978_20	1121344.JHZO01000003_gene981	181.0	0	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-0195978_20	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0195978_20	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-0195978_21	K00558	156.7	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0195978_21	phrog_116	208.0	0	DNA methyltransferase	other
UniRef90	UHGV-0195978_21	UniRef90_A0A1C5KYC3	404.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0195978_21	718252.FP2_16350	394.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0195978_21	oMTase_00004	266.5	0	orphan methyltransferase	RM
Pfam	UHGV-0195978_21	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0195978_21	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0195978_21	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
KOfam	UHGV-0195978_22	K01160	68.4	1.8e-19	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0195978_22	phrog_34	72.3	7.3e-21	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0195978_22	UniRef90_A0A498CNH4	148.0	3.50325e-44	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0195978_22	477974.Daud_0813	52.4	0.00000136	N/A	N/A
Pfam	UHGV-0195978_22	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
structural_annotation	UHGV-0195978_22	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
COG	UHGV-0195978_24	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0195978_24	TIGR04381	N/A	N/A	N/A	N/A
PHROG	UHGV-0195978_27	phrog_3777	81.0	6.2e-24	N/A	unknown function
UniRef90	UHGV-0195978_27	UniRef90_A0A417F883	143.0	4.24001e-40	N/A	N/A
eggNOG-mapper	UHGV-0195978_27	411462.DORLON_00813	75.5	0.0000000000000113	N/A	N/A
Pfam	UHGV-0195978_27	PF12957	N/A	N/A	N/A	DUF3846
PHROG	UHGV-0195978_30	phrog_36	48.0	0.00000000000026	transcriptional regulator	transcription regulation
UniRef90	UHGV-0195978_30	UniRef90_UPI001C10AB33	109.0	1.07e-27	N/A	N/A
eggNOG-mapper	UHGV-0195978_30	580331.Thit_1400	80.9	2.35e-17	N/A	N/A
structural_annotation	UHGV-0195978_30	PF07374,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0195978_33	phrog_7339	102.4	3.6e-30	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0195978_33	UniRef90_A0A2V2GLL9	439.0	0	Metallophos_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0195978_33	1150474.JQJI01000006_gene784	92.0	2.63e-19	metallophosphoesterase	N/A
Pfam	UHGV-0195978_33	PF00149	N/A	N/A	Calcineurin-like phosphoesterase	Metallophos
COG	UHGV-0195978_33	COG1408	N/A	N/A	Predicted phosphohydrolase, MPP superfamily	N/A
structural_annotation	UHGV-0195978_33	PF12850,MF_00325,NF003118,COG1311	N/A	N/A	N/A	N/A
KOfam	UHGV-0195978_34	K07451	51.3	0.00000000000002	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0195978_34	phrog_119	85.1	7.5e-25	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0195978_34	UniRef90_A0A2V2GQ57	154.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0195978_34	1226322.HMPREF1545_00111	115.0	1.17e-32	HNH nucleases	N/A
Pfam	UHGV-0195978_34	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0195978_34	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0195978_34	TIGR02646	N/A	N/A	N/A	N/A
PHROG	UHGV-0195978_35	phrog_361	73.5	2.9e-21	terminase small subunit	head and packaging
UniRef90	UHGV-0195978_35	UniRef90_A0A1C6H6I9	163.0	0	Phage terminase, small subunit	N/A
Pfam	UHGV-0195978_35	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0195978_35	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0195978_35	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0195978_36	phrog_9	294.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0195978_36	UniRef90_A0A2V2GQ67	1149.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0195978_36	1226322.HMPREF1545_00113	871.0	0	Phage Terminase	N/A
Pfam	UHGV-0195978_36	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0195978_36	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0195978_36	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0195978_36	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0195978_37	phrog_12	180.7	0	portal protein	head and packaging
UniRef90	UHGV-0195978_37	UniRef90_A0A2V2GQD5	715.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0195978_37	1226322.HMPREF1545_00114	502.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0195978_37	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0195978_37	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0195978_37	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0195978_37	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0195978_38	K06904	150.8	1.26117e-44	N/A	N/A
PHROG	UHGV-0195978_38	phrog_80	176.8	0	head maturation protease	head and packaging
UniRef90	UHGV-0195978_38	UniRef90_A0A2V2GNJ3	337.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0195978_38	1226322.HMPREF1545_00115	237.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0195978_38	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0195978_38	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0195978_38	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0195978_38	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0195978_39	phrog_10	216.4	0	major head protein	head and packaging
UniRef90	UHGV-0195978_39	UniRef90_A0A2V2GRA2	912.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0195978_39	1226322.HMPREF1545_00116	573.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0195978_39	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0195978_39	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0195978_39	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0195978_39	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0195978_40	phrog_2550	84.2	7e-25	N/A	unknown function
UniRef90	UHGV-0195978_40	UniRef90_UPI001E35E63D	72.4	0.0000000000000102	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0195978_40	1226322.HMPREF1545_00117	107.0	1.99e-29	N/A	N/A
structural_annotation	UHGV-0195978_40	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0195978_41	phrog_1951	92.6	2.5e-27	head-tail adaptor	connector
UniRef90	UHGV-0195978_41	UniRef90_A0A2V2GSS5	182.0	0	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-0195978_41	1226322.HMPREF1545_00118	104.0	7.28e-28	N/A	N/A
NCBIFam	UHGV-0195978_41	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0195978_41	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0195978_42	UniRef90_UPI00073E355A	164.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0195978_42	1226322.HMPREF1545_00119	93.2	1.16e-22	N/A	N/A
Pfam	UHGV-0195978_42	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0195978_42	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
UniRef90	UHGV-0195978_43	UniRef90_U2SBX3	101.0	7.46e-26	HTH merR-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0195978_43	1226322.HMPREF1545_00120	101.0	1.25e-26	N/A	N/A
structural_annotation	UHGV-0195978_43	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0195978_44	phrog_88	173.8	0	major tail protein	tail
UniRef90	UHGV-0195978_44	UniRef90_A0A2V2GLL2	360.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0195978_44	1226322.HMPREF1545_00121	191.0	0	phage major tail protein, phi13 family	N/A
Pfam	UHGV-0195978_44	PF06488	N/A	N/A	Phage tail tube protein	L_lac_phage_MSP
NCBIFam	UHGV-0195978_44	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0195978_44	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0195978_45	phrog_709	96.4	1.8e-28	N/A	unknown function
eggNOG-mapper	UHGV-0195978_45	411471.SUBVAR_05858	127.0	2.94e-36	N/A	N/A
structural_annotation	UHGV-0195978_45	PF19591	N/A	N/A	N/A	N/A
PHROG	UHGV-0195978_46	phrog_13339	401.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0195978_46	UniRef90_A0A2V2GLB5	1041.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0195978_46	1033743.CAES01000020_gene3130	309.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0195978_46	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0195978_46	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0195978_46	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0195978_46	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0195978_47	phrog_20385	80.6	3.1e-24	minor tail protein	tail
UniRef90	UHGV-0195978_47	UniRef90_UPI001C013719	157.0	3.40516e-43	phage baseplate protein	N/A
eggNOG-mapper	UHGV-0195978_47	411471.SUBVAR_05861	189.0	0	N/A	N/A
structural_annotation	UHGV-0195978_47	PF16774,PF20753,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0195978_48	phrog_7064	152.6	0	tail protein	tail
eggNOG-mapper	UHGV-0195978_48	665956.HMPREF1032_00106	258.0	0	N/A	N/A
Pfam	UHGV-0195978_48	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0195978_48	PF14594,TIGR03361,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0195978_49	phrog_5811	78.1	8.9e-23	N/A	unknown function
eggNOG-mapper	UHGV-0195978_49	665956.HMPREF1032_00105	127.0	2.13e-32	N/A	N/A
Pfam	UHGV-0195978_50	PF13964	N/A	N/A	Kelch motif	Kelch_6
structural_annotation	UHGV-0195978_50	PF07250,MF_01195,TIGR03548,COG3055	N/A	N/A	N/A	N/A