UHGV-0196289 (vOTU-105771)

Viral Genome: UHGV-0196289

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0196289
vOTU ID	vOTU-105771
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN05414944_a1_ct332576_vs1@Myoviridae__sp._ctuK01
Associated BioSample	SAMN05414944
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.44 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9785
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.96
Jumbo phage	No

Genome content
Genome length (bp)	30,190
GC content	46.76%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	47
CDS density	92%
Average CDS length (bps)	589.34
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 77.44)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0196289_1	K14059	191.4	0	int; integrase	N/A
PHROG	UHGV-0196289_1	phrog_1	178.0	0	integrase	integration and excision
UniRef90	UHGV-0196289_1	UniRef90_R6J9I2	346.0	0	Integrase family protein	N/A
eggNOG-mapper	UHGV-0196289_1	1262914.BN533_01960	346.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0196289_1	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-0196289_1	PF13102	N/A	N/A	Phage integrase SAM-like domain	Phage_int_SAM_5
Pfam	UHGV-0196289_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0196289_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0196289_1	PF00589,PF13102,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0196289_2	UniRef90_A0A416ESD6	308.0	0	N/A	N/A
Pfam	UHGV-0196289_2	PF12686	N/A	N/A	N/A	DUF3800
structural_annotation	UHGV-0196289_2	TIGR00729,COG1039	N/A	N/A	N/A	N/A
PHROG	UHGV-0196289_3	phrog_87	93.4	1.6e-27	metallo-protease	other
UniRef90	UHGV-0196289_3	UniRef90_R6WQB8	276.0	0	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-0196289_3	484770.UFO1_1662	160.0	0	N/A	N/A
Pfam	UHGV-0196289_3	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0196289_3	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0196289_3	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0196289_4	K22299	52.6	0.0000000000000099	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0196289_4	phrog_8	60.4	3.7e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0196289_4	UniRef90_R6WK78	146.0	3.25942e-42	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0196289_4	484770.UFO1_1663	101.0	2.97e-25	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0196289_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0196289_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0196289_4	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0196289_5	UniRef90_A0A3C1INN2	113.0	1.26e-31	N/A	N/A
eggNOG-mapper	UHGV-0196289_5	742723.HMPREF9477_00936	55.5	0.00000000192	Helix-turn-helix	N/A
Pfam	UHGV-0196289_5	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0196289_5	PF05339,NF002773,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0196289_6	K07741	143.9	2.40042e-42	antB; anti-repressor protein	N/A
PHROG	UHGV-0196289_6	phrog_130	281.8	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0196289_6	UniRef90_R6WX82	449.0	0	Prophage antirepressor	N/A
eggNOG-mapper	UHGV-0196289_6	1122146.AUHP01000010_gene1023	333.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0196289_6	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0196289_6	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0196289_6	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0196289_6	PF03374,PF02498,TIGR02681,COG3645	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0196289_8	PF21441	N/A	N/A	N/A	N/A
COG	UHGV-0196289_10	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
UniRef90	UHGV-0196289_11	UniRef90_R6XZA3	161.0	0	LysM domain protein	N/A
COG	UHGV-0196289_11	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0196289_11	MF_02014,NF010723	N/A	N/A	N/A	N/A
PHROG	UHGV-0196289_13	phrog_253	102.7	3.4e-30	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0196289_13	UniRef90_R6WX74	303.0	0	Siphovirus family protein	N/A
eggNOG-mapper	UHGV-0196289_13	411470.RUMGNA_02192	134.0	3.75e-38	Siphovirus Gp157	N/A
Pfam	UHGV-0196289_13	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0196289_13	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-0196289_14	phrog_7838	135.6	3.9e-40	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0196289_14	UniRef90_UPI001D07B780	147.0	1.22e-40	RAD52 family DNA repair protein	N/A
eggNOG-mapper	UHGV-0196289_14	69279.BG36_21015	109.0	1.53e-26	protein involved in exopolysaccharide biosynthesis	N/A
COG	UHGV-0196289_14	COG3206	N/A	N/A	Exopolysaccharide export protein/domain GumC/Wzc1	N/A
structural_annotation	UHGV-0196289_14	PF04098,TIGR00607,COG5055	N/A	N/A	N/A	N/A
PHROG	UHGV-0196289_15	phrog_7566	79.2	3.5e-23	N/A	unknown function
eggNOG-mapper	UHGV-0196289_15	1304866.K413DRAFT_1198	80.5	2.56e-18	N/A	N/A
PHROG	UHGV-0196289_16	phrog_72	52.1	0.000000000000006	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0196289_16	UniRef90_A0A2Z4Q9W9	109.0	4.5e-27	NinB	N/A
eggNOG-mapper	UHGV-0196289_16	1507.HMPREF0262_00432	105.0	2.44e-26	N/A	N/A
PHROG	UHGV-0196289_17	phrog_4880	196.8	0	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0196289_17	UniRef90_R6WQA7	394.0	0	DnaD and phage-associated domain protein	N/A
eggNOG-mapper	UHGV-0196289_17	272562.CA_C1934	142.0	1.33e-38	N-terminal phage replisome organiser (Phage_rep_org_N)	N/A
Pfam	UHGV-0196289_17	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-0196289_17	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
structural_annotation	UHGV-0196289_17	PF09681,TIGR01714,COG3388	N/A	N/A	N/A	N/A
KOfam	UHGV-0196289_18	K02315	190.0	0	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0196289_18	phrog_50	168.1	0	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0196289_18	UniRef90_R6WX70	507.0	0	AAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0196289_18	796942.HMPREF9623_00441	236.0	0	N/A	N/A
Pfam	UHGV-0196289_18	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
NCBIFam	UHGV-0196289_18	NF005992.0	N/A	N/A	hypothetical protein	N/A
COG	UHGV-0196289_18	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0196289_18	PF01695,MF_00377,NF005992,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0196289_21	phrog_236	104.2	1.8e-30	nucleotide kinase	other
UniRef90	UHGV-0196289_21	UniRef90_UPI001C62D28D	115.0	1.19e-30	N/A	N/A
eggNOG-mapper	UHGV-0196289_21	1111454.HMPREF1250_1038	125.0	1.16e-35	N/A	N/A
Pfam	UHGV-0196289_21	PF11753	N/A	N/A	N/A	DUF3310
KOfam	UHGV-0196289_23	K03111	140.2	1.99993e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0196289_23	phrog_44	148.8	2.8026e-44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0196289_23	UniRef90_R6WK64	269.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0196289_23	626939.HMPREF9443_01150	176.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0196289_23	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0196289_23	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0196289_23	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0196289_23	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0196289_23	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0196289_25	phrog_190	128.7	3.9e-38	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0196289_25	UniRef90_UPI0018C4B0C5	125.0	3.86e-35	N/A	N/A
eggNOG-mapper	UHGV-0196289_25	1511.CLOST_1536	99.4	4.04e-25	N/A	N/A
Pfam	UHGV-0196289_25	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0196289_25	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-0196289_26	phrog_36	82.7	4.5e-24	transcriptional regulator	transcription regulation
UniRef90	UHGV-0196289_26	UniRef90_R6WQ64	282.0	0	Sigma-70 region 4 domain protein	N/A
eggNOG-mapper	UHGV-0196289_26	1235799.C818_01032	50.4	0.00000751	N/A	N/A
Pfam	UHGV-0196289_26	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
COG	UHGV-0196289_26	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0196289_26	PF07374,MF_00674,NF007227,COG1342	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0196289_27	568816.Acin_1817	113.0	5.61e-30	N/A	N/A
UniRef90	UHGV-0196289_28	UniRef90_R6X5I6	268.0	0	PhageMetallopep domain-containing protein	N/A
eggNOG-mapper	UHGV-0196289_28	1123288.SOV_2c10530	97.8	1.6e-23	N/A	N/A
Pfam	UHGV-0196289_28	PF18894	N/A	N/A	Putative phage metallopeptidase	PhageMetallopep
structural_annotation	UHGV-0196289_28	PF18894,COG4900	N/A	N/A	N/A	N/A
UniRef90	UHGV-0196289_29	UniRef90_UPI001E414EFE	52.0	0.00000638	KGG domain-containing protein	N/A
eggNOG-mapper	UHGV-0196289_29	556268.OFAG_00320	65.9	0.00000000000417	N/A	N/A
PHROG	UHGV-0196289_30	phrog_30251	639.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0196289_30	UniRef90_UPI001F2335B1	646.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0196289_30	357809.Cphy_2971	601.0	0	TIGRFAM Phage	N/A
Pfam	UHGV-0196289_30	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0196289_30	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0196289_30	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0196289_30	PF17289,PF03237,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
PHROG	UHGV-0196289_31	phrog_145	150.1	4.2039e-45	portal protein	head and packaging
UniRef90	UHGV-0196289_31	UniRef90_R6WQ48	899.0	0	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0196289_31	1232428.CAVO010000021_gene806	324.0	0	N/A	N/A
structural_annotation	UHGV-0196289_31	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0196289_32	phrog_1657	93.8	4.3e-29	head morphogenesis	head and packaging
UniRef90	UHGV-0196289_32	UniRef90_R6AE12	583.0	0	TNT domain-containing protein	N/A
eggNOG-mapper	UHGV-0196289_32	1232428.CAVO010000021_gene805	277.0	0	N/A	N/A
Pfam	UHGV-0196289_32	PF14021	N/A	N/A	Tuberculosis necrotizing toxin	TNT
structural_annotation	UHGV-0196289_32	PF14021	N/A	N/A	N/A	N/A
PHROG	UHGV-0196289_34	phrog_3675	95.1	3.8e-28	N/A	unknown function
UniRef90	UHGV-0196289_34	UniRef90_R6AGU8	166.0	0	YjcQ protein	N/A
eggNOG-mapper	UHGV-0196289_34	1029718.SFBM_0119	80.5	5.59e-18	YjcQ protein	N/A
Pfam	UHGV-0196289_34	PF09639	N/A	N/A	YjcQ protein	YjcQ
structural_annotation	UHGV-0196289_34	PF09639,TIGR04176,COG2345	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0196289_35	1280706.AUJE01000003_gene2260	108.0	2.4e-26	N/A	N/A
structural_annotation	UHGV-0196289_35	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0196289_36	phrog_422	219.2	0	major head protein	head and packaging
UniRef90	UHGV-0196289_36	UniRef90_R6WWZ7	528.0	0	Gp7	N/A
eggNOG-mapper	UHGV-0196289_36	1352230.S6AVV3_9CAUD	345.0	0	N/A	N/A
NCBIFam	UHGV-0196289_36	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0196289_36	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0196289_37	phrog_5	50.1	0.000000000000072	tail completion or Neck1 protein	connector
UniRef90	UHGV-0196289_37	UniRef90_F9MMJ2	101.0	1.92e-24	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0196289_37	1000569.HMPREF1040_0194	101.0	3.22e-25	Phage virion morphogenesis	N/A
COG	UHGV-0196289_37	COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0196289_37	PF17395,TIGR01725,COG5005	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0196289_38	1111454.HMPREF1250_1049	70.5	0.0000000000000729	N/A	N/A
UniRef90	UHGV-0196289_39	UniRef90_R6WK09	256.0	0	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0196289_39	1280706.AUJE01000003_gene2256	71.6	0.0000000000000364	N/A	N/A
structural_annotation	UHGV-0196289_39	PF08873,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0196289_40	phrog_1407	155.1	0	major tail protein	tail
UniRef90	UHGV-0196289_40	UniRef90_R6X5G0	308.0	0	Phage major tail protein TP901-1 family	N/A
eggNOG-mapper	UHGV-0196289_40	568816.Acin_1911	251.0	0	Phage tail tube protein	N/A
Pfam	UHGV-0196289_40	PF06199	N/A	N/A	Phage tail tube protein	Phage_tail_2
COG	UHGV-0196289_40	COG5437	N/A	N/A	Phage tail protein, TP901-1 family	N/A
structural_annotation	UHGV-0196289_40	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0196289_41	1123288.SOV_2c03540	65.5	0.00000000000419	N/A	N/A
structural_annotation	UHGV-0196289_41	PF19591	N/A	N/A	N/A	N/A
PHROG	UHGV-0196289_43	phrog_12798	168.0	0	N/A	unknown function
UniRef90	UHGV-0196289_43	UniRef90_R6WQ18	1489.0	0	Tape measure domain-containing protein	N/A
eggNOG-mapper	UHGV-0196289_43	2754.EH55_13250	194.0	0	tape measure	N/A
Pfam	UHGV-0196289_43	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0196289_43	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0196289_43	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
structural_annotation	UHGV-0196289_43	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0196289_44	phrog_2913	60.0	2.5e-17	glycoside hydrolase	other
eggNOG-mapper	UHGV-0196289_44	592028.GCWU000321_01387	91.3	1.77e-20	N/A	N/A
Pfam	UHGV-0196289_44	PF09343	N/A	N/A	N/A	DUF2460
COG	UHGV-0196289_44	COG5448	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0196289_44	PF09343,TIGR02217,COG5448	N/A	N/A	N/A	N/A
UniRef90	UHGV-0196289_45	UniRef90_R6WK00	387.0	0	N/A	N/A
eggNOG-mapper	UHGV-0196289_45	910314.HMPREF9220_1085	135.0	2.82e-37	N/A	N/A
Pfam	UHGV-0196289_45	PF09931	N/A	N/A	N/A	DUF2163
COG	UHGV-0196289_45	COG5449	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0196289_45	PF09931,TIGR01600,COG4672	N/A	N/A	N/A	N/A
KOfam	UHGV-0196289_46	K13695	48.7	0.00000000000011	nlpC; probable lipoprotein NlpC	N/A
PHROG	UHGV-0196289_46	phrog_329	54.5	0.0000000000000013	minor tail protein	tail
UniRef90	UHGV-0196289_46	UniRef90_R6XZ04	310.0	0	Cell wall-associated hydrolase	N/A
eggNOG-mapper	UHGV-0196289_46	1561065.A0A0B5A615_9CAUD	52.8	0.00000112	peptidoglycan catabolic process	N/A
Pfam	UHGV-0196289_46	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
structural_annotation	UHGV-0196289_46	PF00877,TIGR02219,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0196289_47	phrog_1101	167.0	0	tail protein	tail
UniRef90	UHGV-0196289_47	UniRef90_R6AE22	276.0	0	Phage-tail_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0196289_47	592028.GCWU000321_01390	275.0	0	Putative phage tail protein	N/A
Pfam	UHGV-0196289_47	PF13550	N/A	N/A	Putative phage tail protein	Phage-tail_3
COG	UHGV-0196289_47	COG1511	N/A	N/A	N/A	N/A